Wall clock time and date at job start Tue Mar 31 2020 13:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47288 * 2 1 4 4 C 1.46500 * 119.99737 * 276.95941 * 3 2 1 5 5 C 1.50700 * 109.47101 * 274.99673 * 4 3 2 6 6 H 1.08004 * 120.00062 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99917 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00377 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99864 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46878 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46723 * 120.00334 * 9 7 5 12 12 H 1.48502 * 109.47094 * 240.00106 * 9 7 5 13 13 S 1.65599 * 120.00257 * 96.95436 * 3 2 1 14 14 O 1.42103 * 106.40082 * 338.07394 * 13 3 2 15 15 O 1.42094 * 106.40474 * 205.14925 * 13 3 2 16 16 N 1.65597 * 107.21565 * 91.61051 * 13 3 2 17 17 C 1.46498 * 120.00361 * 66.08228 * 16 13 3 18 18 H 1.09005 * 115.55400 * 359.76180 * 17 16 13 19 19 C 1.53058 * 117.51259 * 214.05225 * 17 16 13 20 20 C 1.52690 * 59.93259 * 252.53411 * 19 17 16 21 21 C 1.53246 * 117.88321 * 107.77440 * 20 19 17 22 22 C 1.53333 * 108.48964 * 196.24748 * 21 20 19 23 23 O 1.42867 * 109.32441 * 306.03648 * 22 21 20 24 24 C 1.42865 * 114.52904 * 64.35603 * 23 22 21 25 25 C 1.53257 * 117.87785 * 252.22279 * 20 19 17 26 26 H 1.09003 * 109.46807 * 185.02763 * 1 2 3 27 27 H 1.08999 * 109.47476 * 305.03420 * 1 2 3 28 28 H 1.09004 * 109.47130 * 65.03469 * 1 2 3 29 29 H 1.09005 * 109.47442 * 240.00010 * 2 1 3 30 30 H 1.09002 * 109.47212 * 119.99640 * 2 1 3 31 31 H 1.09002 * 109.47357 * 34.99808 * 4 3 2 32 32 H 1.09005 * 109.47043 * 154.99874 * 4 3 2 33 33 H 0.96998 * 120.00117 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00060 * 246.08200 * 16 13 3 35 35 H 1.09007 * 117.50375 * 359.97438 * 19 17 16 36 36 H 1.08997 * 117.50994 * 145.06000 * 19 17 16 37 37 H 1.08998 * 109.63169 * 315.94679 * 21 20 19 38 38 H 1.08996 * 109.63517 * 76.54528 * 21 20 19 39 39 H 1.09001 * 109.49499 * 186.08004 * 22 21 20 40 40 H 1.08996 * 109.49290 * 65.99237 * 22 21 20 41 41 H 1.09001 * 109.50069 * 175.68325 * 24 23 22 42 42 H 1.09005 * 109.51661 * 55.60908 * 24 23 22 43 43 H 1.09000 * 109.63254 * 283.44836 * 25 20 19 44 44 H 1.08999 * 109.63482 * 44.05102 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1176 2.1230 -1.2594 5 6 3.4334 1.8105 -1.9242 6 1 4.1267 1.1279 -1.4552 7 6 3.7527 2.3967 -3.1305 8 7 2.9093 3.2291 -3.7009 9 14 5.3842 2.0098 -3.9542 10 1 6.1476 1.0520 -3.1146 11 1 5.1344 1.4079 -5.2886 12 1 6.1669 3.2616 -4.1144 13 16 2.4581 2.1040 1.4235 14 8 1.7953 1.3896 2.4578 15 8 2.3083 3.5032 1.2262 16 7 4.0783 1.8319 1.6313 17 6 5.0459 2.4310 0.7089 18 1 4.6203 3.0388 -0.0896 19 6 6.3089 1.6277 0.3892 20 6 6.3937 2.8628 1.2829 21 6 6.6350 2.6483 2.7810 22 6 6.2813 3.9438 3.5209 23 8 7.0064 5.0311 2.9437 24 6 6.6653 5.3173 1.5862 25 6 7.0472 4.1225 0.7043 26 1 -0.3633 -1.0238 0.0901 27 1 -0.3634 0.5899 0.8414 28 1 -0.3633 0.4338 -0.9317 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.2994 1.8317 -1.9182 32 1 2.0578 3.1924 -1.0569 33 1 3.1341 3.6418 -4.5494 34 1 4.3866 1.2759 2.3638 35 1 6.4200 0.6535 0.8656 36 1 6.7143 1.7073 -0.6194 37 1 6.0030 1.8365 3.1411 38 1 7.6833 2.4035 2.9517 39 1 6.5484 3.8463 4.5732 40 1 5.2114 4.1325 3.4327 41 1 7.2071 6.2028 1.2538 42 1 5.5928 5.4972 1.5104 43 1 8.1306 4.0033 0.6983 44 1 6.6883 4.2877 -0.3116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001413371802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:04 Heat of formation + Delta-G solvation = -106.847417 kcal Electronic energy + Delta-G solvation = -27181.864397 eV Core-core repulsion = 23454.496371 eV Total energy + Delta-G solvation = -3727.368026 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.73157 -36.99698 -36.64036 -36.05325 -35.25414 -32.79390 -32.52565 -31.09460 -29.97335 -29.33644 -26.68092 -23.68051 -23.18889 -22.89096 -21.75815 -21.73476 -18.95544 -18.84548 -17.24488 -16.87672 -16.46544 -16.13535 -15.91051 -15.53355 -15.17487 -14.76463 -14.45888 -14.23992 -13.85475 -13.33710 -13.26935 -13.00238 -12.83008 -12.42509 -12.11109 -12.05839 -11.97634 -11.74002 -11.62992 -11.59522 -11.42467 -11.36585 -11.20666 -11.11760 -10.97168 -10.56113 -10.55989 -10.48991 -10.40255 -10.17124 -10.04496 -9.78637 -9.07292 -8.58320 -8.53400 -8.10234 -6.17870 -4.24238 1.23526 3.16908 3.26589 3.27668 3.45279 3.96747 3.98187 4.15325 4.28871 4.74840 4.87615 4.98022 5.07868 5.12431 5.15606 5.17905 5.35705 5.38549 5.55738 5.60659 5.67641 5.71331 5.75252 5.80842 5.82786 5.83795 5.98516 6.07235 6.12771 6.16863 6.28268 6.30131 6.42384 6.60523 6.64199 6.73859 7.21813 7.30984 7.33141 7.42401 7.62260 7.80382 8.09368 8.82728 9.41603 10.89876 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.007350 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.600781 B = 3808.690401 C = 5603.385061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.242 3.758 5 C -0.541 4.541 6 H 0.069 0.931 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.269 1.269 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.786 3.214 14 O -1.000 7.000 15 O -0.977 6.977 16 N -1.099 6.099 17 C 0.122 3.878 18 H 0.158 0.842 19 C -0.173 4.173 20 C -0.150 4.150 21 C -0.111 4.111 22 C 0.063 3.937 23 O -0.387 6.387 24 C 0.061 3.939 25 C -0.115 4.115 26 H 0.057 0.943 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.039 0.961 32 H 0.050 0.950 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.089 0.911 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.553 -3.003 9.192 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.120 3.880 5 C -0.580 4.580 6 H 0.087 0.913 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.794 3.206 14 O -0.984 6.984 15 O -0.961 6.961 16 N -0.854 5.854 17 C 0.013 3.987 18 H 0.175 0.825 19 C -0.212 4.212 20 C -0.153 4.153 21 C -0.149 4.149 22 C -0.014 4.014 23 O -0.306 6.306 24 C -0.016 4.016 25 C -0.153 4.153 26 H 0.076 0.924 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.237 0.763 35 H 0.111 0.889 36 H 0.120 0.880 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.072 0.928 41 H 0.110 0.890 42 H 0.077 0.923 43 H 0.091 0.909 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 4.974 -2.166 9.567 10.998 hybrid contribution 1.134 -1.022 -0.879 1.761 sum 6.107 -3.188 8.688 11.088 Atomic orbital electron populations 1.22185 0.96922 1.01294 1.02334 1.20971 0.93664 0.82842 1.02120 1.57685 1.77990 1.22803 1.24701 1.19234 0.97684 0.91905 0.79191 1.21681 1.03118 1.27533 1.05708 0.91256 1.24942 0.96941 0.94886 0.96969 1.69941 1.35559 1.29158 1.17829 0.86649 0.83981 0.78365 0.79710 1.19344 1.21023 1.20808 1.01729 0.72437 0.73717 0.72674 1.93552 1.72874 1.74987 1.57028 1.93583 1.85315 1.31118 1.86043 1.55702 1.25578 1.64614 1.39469 1.21716 0.83768 0.99275 0.93895 0.82518 1.23404 1.02488 0.94875 1.00461 1.21954 1.02264 0.96581 0.94482 1.21669 1.01876 0.98270 0.93060 1.22569 0.96155 0.85997 0.96686 1.87800 1.64540 1.51373 1.26847 1.22637 1.00643 0.96925 0.81378 1.21774 1.00575 0.93236 0.99739 0.92368 0.92825 0.92079 0.90253 0.91840 0.94343 0.93214 0.92619 0.76266 0.88892 0.88031 0.91153 0.90982 0.89247 0.92847 0.88987 0.92331 0.90911 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.22 37.15 0.38 -2.22 16 2 C 0.13 2.20 6.10 -4.04 -0.02 2.17 16 3 N -0.99 -19.45 2.83 -115.66 -0.33 -19.78 16 4 C 0.24 5.66 5.44 -5.19 -0.03 5.63 16 5 C -0.54 -13.00 7.39 -34.44 -0.25 -13.26 16 6 H 0.07 1.60 7.15 -52.48 -0.38 1.22 16 7 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 8 N -0.89 -24.08 13.29 55.43 0.74 -23.35 16 9 Si 0.89 19.41 29.54 -169.99 -5.02 14.39 16 10 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 S 2.79 53.25 6.10 -107.50 -0.66 52.59 16 14 O -1.00 -19.76 17.01 -57.17 -0.97 -20.74 16 15 O -0.98 -21.93 16.43 -57.17 -0.94 -22.87 16 16 N -1.10 -17.42 5.74 -4.99 -0.03 -17.45 16 17 C 0.12 2.02 4.94 -68.05 -0.34 1.69 16 18 H 0.16 3.10 6.60 -51.93 -0.34 2.75 16 19 C -0.17 -2.55 9.93 -26.86 -0.27 -2.81 16 20 C -0.15 -2.13 2.03 -154.55 -0.31 -2.44 16 21 C -0.11 -1.36 5.73 -26.43 -0.15 -1.51 16 22 C 0.06 0.80 6.85 37.33 0.26 1.06 16 23 O -0.39 -5.54 10.69 -35.23 -0.38 -5.92 16 24 C 0.06 0.83 6.85 37.33 0.26 1.09 16 25 C -0.12 -1.58 5.92 -26.43 -0.16 -1.74 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.97 8.09 -51.93 -0.42 0.55 16 29 H 0.08 1.33 8.12 -51.93 -0.42 0.90 16 30 H 0.06 0.96 7.49 -51.93 -0.39 0.57 16 31 H 0.04 0.95 8.06 -51.93 -0.42 0.53 16 32 H 0.05 1.29 6.93 -51.93 -0.36 0.93 16 33 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 34 H 0.40 5.29 7.27 -34.47 -0.25 5.04 16 35 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 36 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 37 H 0.07 0.78 6.30 -51.93 -0.33 0.45 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.08 1.16 8.08 -51.93 -0.42 0.74 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -29.75 363.61 -9.93 -39.68 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -7.09 Total: 8.75 kcal Atomic # 6 Polarization: -10.04 SS G_CDS: -0.74 Total: -10.78 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: 0.38 Total: -60.58 kcal Atomic # 8 Polarization: -47.23 SS G_CDS: -2.29 Total: -49.52 kcal Atomic # 14 Polarization: 19.41 SS G_CDS: -5.02 Total: 14.39 kcal Atomic # 16 Polarization: 53.25 SS G_CDS: -0.66 Total: 52.59 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.75 -9.93 -39.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413371802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.172 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds