Wall clock time and date at job start Tue Mar 31 2020 13:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46502 * 109.47288 * 2 1 4 4 C 1.46500 * 119.99737 * 276.95941 * 3 2 1 5 5 C 1.50700 * 109.47101 * 274.99673 * 4 3 2 6 6 H 1.08004 * 120.00062 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99917 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00377 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 119.99864 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46878 * 0.02562 * 9 7 5 11 11 H 1.48507 * 109.46723 * 120.00334 * 9 7 5 12 12 H 1.48502 * 109.47094 * 240.00106 * 9 7 5 13 13 S 1.65599 * 120.00257 * 96.95436 * 3 2 1 14 14 O 1.42103 * 106.40082 * 338.07394 * 13 3 2 15 15 O 1.42094 * 106.40474 * 205.14925 * 13 3 2 16 16 N 1.65597 * 107.21565 * 91.61051 * 13 3 2 17 17 C 1.46498 * 120.00361 * 66.08228 * 16 13 3 18 18 H 1.09005 * 115.55400 * 359.76180 * 17 16 13 19 19 C 1.53058 * 117.51259 * 214.05225 * 17 16 13 20 20 C 1.52690 * 59.93259 * 252.53411 * 19 17 16 21 21 C 1.53246 * 117.88321 * 107.77440 * 20 19 17 22 22 C 1.53333 * 108.48964 * 196.24748 * 21 20 19 23 23 O 1.42867 * 109.32441 * 306.03648 * 22 21 20 24 24 C 1.42865 * 114.52904 * 64.35603 * 23 22 21 25 25 C 1.53257 * 117.87785 * 252.22279 * 20 19 17 26 26 H 1.09003 * 109.46807 * 185.02763 * 1 2 3 27 27 H 1.08999 * 109.47476 * 305.03420 * 1 2 3 28 28 H 1.09004 * 109.47130 * 65.03469 * 1 2 3 29 29 H 1.09005 * 109.47442 * 240.00010 * 2 1 3 30 30 H 1.09002 * 109.47212 * 119.99640 * 2 1 3 31 31 H 1.09002 * 109.47357 * 34.99808 * 4 3 2 32 32 H 1.09005 * 109.47043 * 154.99874 * 4 3 2 33 33 H 0.96998 * 120.00117 * 179.97438 * 8 7 5 34 34 H 0.96998 * 120.00060 * 246.08200 * 16 13 3 35 35 H 1.09007 * 117.50375 * 359.97438 * 19 17 16 36 36 H 1.08997 * 117.50994 * 145.06000 * 19 17 16 37 37 H 1.08998 * 109.63169 * 315.94679 * 21 20 19 38 38 H 1.08996 * 109.63517 * 76.54528 * 21 20 19 39 39 H 1.09001 * 109.49499 * 186.08004 * 22 21 20 40 40 H 1.08996 * 109.49290 * 65.99237 * 22 21 20 41 41 H 1.09001 * 109.50069 * 175.68325 * 24 23 22 42 42 H 1.09005 * 109.51661 * 55.60908 * 24 23 22 43 43 H 1.09000 * 109.63254 * 283.44836 * 25 20 19 44 44 H 1.08999 * 109.63482 * 44.05102 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1176 2.1230 -1.2594 5 6 3.4334 1.8105 -1.9242 6 1 4.1267 1.1279 -1.4552 7 6 3.7527 2.3967 -3.1305 8 7 2.9093 3.2291 -3.7009 9 14 5.3842 2.0098 -3.9542 10 1 6.1476 1.0520 -3.1146 11 1 5.1344 1.4079 -5.2886 12 1 6.1669 3.2616 -4.1144 13 16 2.4581 2.1040 1.4235 14 8 1.7953 1.3896 2.4578 15 8 2.3083 3.5032 1.2262 16 7 4.0783 1.8319 1.6313 17 6 5.0459 2.4310 0.7089 18 1 4.6203 3.0388 -0.0896 19 6 6.3089 1.6277 0.3892 20 6 6.3937 2.8628 1.2829 21 6 6.6350 2.6483 2.7810 22 6 6.2813 3.9438 3.5209 23 8 7.0064 5.0311 2.9437 24 6 6.6653 5.3173 1.5862 25 6 7.0472 4.1225 0.7043 26 1 -0.3633 -1.0238 0.0901 27 1 -0.3634 0.5899 0.8414 28 1 -0.3633 0.4338 -0.9317 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.2994 1.8317 -1.9182 32 1 2.0578 3.1924 -1.0569 33 1 3.1341 3.6418 -4.5494 34 1 4.3866 1.2759 2.3638 35 1 6.4200 0.6535 0.8656 36 1 6.7143 1.7073 -0.6194 37 1 6.0030 1.8365 3.1411 38 1 7.6833 2.4035 2.9517 39 1 6.5484 3.8463 4.5732 40 1 5.2114 4.1325 3.4327 41 1 7.2071 6.2028 1.2538 42 1 5.5928 5.4972 1.5104 43 1 8.1306 4.0033 0.6983 44 1 6.6883 4.2877 -0.3116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001413371802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:03 Heat of formation + Delta-G solvation = -127.778356 kcal Electronic energy + Delta-G solvation = -27182.772030 eV Core-core repulsion = 23454.496371 eV Total energy + Delta-G solvation = -3728.275660 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.85450 -38.37790 -38.05859 -37.64087 -36.90795 -34.65670 -33.81476 -32.12524 -31.51329 -30.48025 -28.47513 -24.93390 -24.70975 -24.01432 -23.26692 -22.99594 -20.45673 -20.01287 -18.77851 -18.53485 -18.17688 -17.46820 -17.00755 -16.95477 -16.59576 -16.10362 -15.87443 -15.57415 -15.18852 -14.77523 -14.65541 -14.38177 -14.05466 -13.74883 -13.65569 -13.53994 -13.33946 -13.24436 -13.11725 -13.06718 -12.97835 -12.75862 -12.73689 -12.62216 -12.25588 -12.22087 -12.06326 -11.70275 -11.66780 -11.57151 -11.50442 -11.27387 -10.55062 -10.19895 -9.83054 -9.72971 -8.12587 -6.24440 -0.31324 1.42943 1.46731 1.56459 1.95850 2.44823 2.57376 2.85907 2.94864 3.19885 3.40256 3.70645 3.82192 3.90969 3.94486 3.99818 4.09783 4.23207 4.30475 4.43961 4.50944 4.53007 4.62442 4.70563 4.72209 4.75515 4.78201 4.94748 4.99336 5.00214 5.11559 5.15891 5.23988 5.28277 5.32384 5.37486 5.44597 5.57138 5.80172 5.90951 6.15393 6.19576 6.25612 6.89043 7.44970 8.95876 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010557 B = 0.007350 C = 0.004996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.600781 B = 3808.690401 C = 5603.385061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.121 3.879 3 N -0.994 5.994 4 C 0.258 3.742 5 C -0.530 4.530 6 H 0.082 0.918 7 C 0.015 3.985 8 N -0.930 5.930 9 Si 0.945 3.055 10 H -0.247 1.247 11 H -0.289 1.289 12 H -0.283 1.283 13 S 2.801 3.199 14 O -1.004 7.004 15 O -1.016 7.016 16 N -1.082 6.082 17 C 0.094 3.906 18 H 0.120 0.880 19 C -0.160 4.160 20 C -0.137 4.137 21 C -0.108 4.108 22 C 0.055 3.945 23 O -0.395 6.395 24 C 0.060 3.940 25 C -0.118 4.118 26 H 0.091 0.909 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.019 0.981 32 H 0.016 0.984 33 H 0.263 0.737 34 H 0.420 0.580 35 H 0.116 0.884 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.035 0.965 41 H 0.111 0.889 42 H 0.036 0.964 43 H 0.091 0.909 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.786 -5.005 10.524 14.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.004 4.004 3 N -0.835 5.835 4 C 0.134 3.866 5 C -0.569 4.569 6 H 0.100 0.900 7 C -0.185 4.185 8 N -0.570 5.570 9 Si 0.771 3.229 10 H -0.171 1.171 11 H -0.216 1.216 12 H -0.209 1.209 13 S 2.809 3.191 14 O -0.988 6.988 15 O -1.000 7.000 16 N -0.841 5.841 17 C -0.015 4.015 18 H 0.138 0.862 19 C -0.200 4.200 20 C -0.140 4.140 21 C -0.146 4.146 22 C -0.021 4.021 23 O -0.314 6.314 24 C -0.017 4.017 25 C -0.156 4.156 26 H 0.110 0.890 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.037 0.963 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.257 0.743 35 H 0.134 0.866 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.109 0.891 39 H 0.134 0.866 40 H 0.054 0.946 41 H 0.129 0.871 42 H 0.054 0.946 43 H 0.109 0.891 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.205 -4.205 10.935 13.754 hybrid contribution 0.402 -0.390 -1.226 1.348 sum 7.607 -4.595 9.709 13.162 Atomic orbital electron populations 1.22183 0.96039 1.03137 1.01245 1.21253 0.94561 0.81268 1.03333 1.57595 1.78757 1.23860 1.23305 1.18774 0.97054 0.90443 0.80313 1.21901 1.03087 1.26685 1.05227 0.89998 1.25722 1.00064 0.94830 0.97848 1.70079 1.37704 1.30836 1.18366 0.85698 0.80320 0.78395 0.78535 1.17063 1.21577 1.20917 1.01105 0.73022 0.72729 0.72241 1.93536 1.73594 1.74782 1.56922 1.93536 1.86202 1.33752 1.86481 1.55210 1.24132 1.64828 1.39924 1.21512 0.84592 1.01024 0.94355 0.86211 1.23460 0.99954 0.96021 1.00523 1.22068 0.99453 0.96538 0.95941 1.21727 1.03338 0.98347 0.91141 1.22758 0.95171 0.85918 0.98265 1.87791 1.64665 1.52084 1.26860 1.22663 0.99617 0.97853 0.81543 1.21817 1.01580 0.93146 0.99046 0.89042 0.93769 0.93338 0.90031 0.89507 0.96320 0.96631 0.92832 0.74295 0.86604 0.88725 0.89670 0.89127 0.86581 0.94614 0.87114 0.94558 0.89051 0.91238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.01 10.22 71.98 0.74 -4.28 16 2 C 0.12 3.93 6.10 86.38 0.53 4.46 16 3 N -0.99 -39.29 2.83 -519.83 -1.47 -40.76 16 4 C 0.26 12.49 5.44 85.63 0.47 12.96 16 5 C -0.53 -25.70 7.39 25.60 0.19 -25.51 16 6 H 0.08 3.69 7.15 -2.91 -0.02 3.67 16 7 C 0.01 0.75 5.46 84.65 0.46 1.21 16 8 N -0.93 -52.15 13.29 21.45 0.28 -51.87 16 9 Si 0.95 39.66 29.54 68.60 2.03 41.69 16 10 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 11 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 12 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 13 S 2.80 107.19 6.10 -56.49 -0.34 106.84 16 14 O -1.00 -38.60 17.01 -128.00 -2.18 -40.78 16 15 O -1.02 -47.38 16.43 -128.00 -2.10 -49.49 16 16 N -1.08 -32.97 5.74 -169.70 -0.97 -33.94 16 17 C 0.09 3.03 4.94 44.92 0.22 3.25 16 18 H 0.12 4.87 6.60 -2.38 -0.02 4.86 16 19 C -0.16 -4.29 9.93 30.51 0.30 -3.99 16 20 C -0.14 -3.62 2.03 -52.21 -0.11 -3.72 16 21 C -0.11 -2.30 5.73 30.79 0.18 -2.12 16 22 C 0.06 1.30 6.85 72.09 0.49 1.79 16 23 O -0.40 -10.64 10.69 -148.98 -1.59 -12.23 16 24 C 0.06 1.59 6.85 72.09 0.49 2.09 16 25 C -0.12 -3.08 5.92 30.79 0.18 -2.90 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.55 8.09 -2.39 -0.02 1.53 16 29 H 0.08 2.61 8.12 -2.38 -0.02 2.59 16 30 H 0.09 2.41 7.49 -2.39 -0.02 2.40 16 31 H 0.02 0.97 8.06 -2.39 -0.02 0.95 16 32 H 0.02 0.86 6.93 -2.38 -0.02 0.85 16 33 H 0.26 14.05 8.31 -92.71 -0.77 13.28 16 34 H 0.42 9.92 7.27 -96.75 -0.70 9.22 16 35 H 0.12 2.57 8.14 -2.38 -0.02 2.55 16 36 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.08 1.56 6.30 -2.39 -0.02 1.54 16 38 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.11 2.47 8.14 -2.39 -0.02 2.45 16 42 H 0.04 1.11 8.14 -2.38 -0.02 1.09 16 43 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.07 1.97 8.08 -2.39 -0.02 1.95 16 Total: -1.00 -65.13 363.61 -1.92 -67.04 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: 0.29 Total: 30.25 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: 4.14 Total: -16.75 kcal Atomic # 7 Polarization: -124.41 SS G_CDS: -2.16 Total: -126.57 kcal Atomic # 8 Polarization: -96.62 SS G_CDS: -5.87 Total: -102.50 kcal Atomic # 14 Polarization: 39.66 SS G_CDS: 2.03 Total: 41.69 kcal Atomic # 16 Polarization: 107.19 SS G_CDS: -0.34 Total: 106.84 kcal Total: -65.13 -1.92 -67.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001413371802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.734 kcal (2) G-P(sol) polarization free energy of solvation -65.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds