Wall clock time and date at job start Tue Mar 31 2020 13:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47246 * 2 1 4 4 C 1.34776 * 120.00198 * 180.02562 * 3 2 1 5 5 O 1.21274 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.99814 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.46686 * 204.99790 * 6 4 3 8 8 C 1.53000 * 109.46848 * 85.00186 * 6 4 3 9 9 N 1.46495 * 109.47009 * 324.99826 * 6 4 3 10 10 S 1.65602 * 119.99605 * 188.62321 * 9 6 4 11 11 O 1.42103 * 104.28049 * 318.92489 * 10 9 6 12 12 O 1.42099 * 104.27629 * 191.06889 * 10 9 6 13 13 C 1.81399 * 104.44843 * 74.99940 * 10 9 6 14 14 C 1.53004 * 109.46936 * 183.04930 * 13 10 9 15 15 C 1.50700 * 115.54952 * 299.07273 * 14 13 10 16 16 H 1.07991 * 120.00081 * 93.71246 * 15 14 13 17 17 C 1.37878 * 119.99713 * 273.71090 * 15 14 13 18 18 N 1.31516 * 120.00390 * 6.15705 * 17 15 14 19 19 Si 1.86796 * 119.99805 * 186.16043 * 17 15 14 20 20 H 1.48505 * 109.47310 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47035 * 299.99954 * 19 17 15 22 22 H 1.48507 * 109.47197 * 60.00052 * 19 17 15 23 23 C 1.53002 * 117.49699 * 84.74540 * 14 13 10 24 24 C 1.53002 * 117.49708 * 153.40383 * 14 13 10 25 25 H 1.09003 * 109.46990 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47074 * 299.99986 * 1 2 3 27 27 H 1.08997 * 109.47271 * 59.99881 * 1 2 3 28 28 H 1.09001 * 109.47485 * 240.00085 * 2 1 3 29 29 H 1.09002 * 109.47481 * 119.99679 * 2 1 3 30 30 H 0.97005 * 119.99772 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46952 * 189.52079 * 7 6 4 32 32 H 1.08998 * 109.47400 * 309.52328 * 7 6 4 33 33 H 1.09003 * 109.46851 * 69.52547 * 7 6 4 34 34 H 1.09000 * 109.47053 * 300.00074 * 8 6 4 35 35 H 1.08998 * 109.46981 * 59.99477 * 8 6 4 36 36 H 1.08997 * 109.47193 * 180.02562 * 8 6 4 37 37 H 0.96995 * 120.00540 * 8.62917 * 9 6 4 38 38 H 1.08998 * 109.47351 * 63.04547 * 13 10 9 39 39 H 1.08999 * 109.46909 * 303.04672 * 13 10 9 40 40 H 0.97007 * 119.99639 * 355.20598 * 18 17 15 41 41 H 1.08998 * 117.49313 * 215.00164 * 23 14 13 42 42 H 1.08993 * 117.50240 * 0.02562 * 23 14 13 43 43 H 1.09000 * 117.49819 * 359.97438 * 24 14 13 44 44 H 1.09001 * 117.49778 * 144.97115 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8457 3.0485 -0.0011 7 6 5.2481 3.0933 -0.6112 8 6 3.8976 3.5715 1.4358 9 7 2.9415 3.8857 -0.7933 10 16 3.3574 5.4492 -1.1467 11 8 3.9298 5.9404 0.0577 12 8 2.1676 6.0169 -1.6771 13 6 4.6223 5.3002 -2.4383 14 6 5.1474 6.6908 -2.8007 15 6 4.1217 7.6512 -3.3455 16 1 3.6133 8.3329 -2.6800 17 6 3.8326 7.6594 -4.6935 18 7 4.3599 6.7508 -5.4848 19 14 2.6919 8.9611 -5.3961 20 1 2.5446 8.7529 -6.8591 21 1 1.3616 8.8574 -4.7445 22 1 3.2632 10.3084 -5.1435 23 6 6.2686 7.2702 -1.9356 24 6 6.5698 6.7862 -3.3563 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 5.6788 4.0830 -0.4596 32 1 5.8779 2.3453 -0.1296 33 1 5.1866 2.8835 -1.6791 34 1 2.8986 3.5395 1.8704 35 1 4.5704 2.9485 2.0251 36 1 4.2605 4.5993 1.4354 37 1 2.0992 3.5243 -1.1108 38 1 4.1862 4.8347 -3.3221 39 1 5.4446 4.6854 -2.0722 40 1 5.0059 6.1180 -5.1338 41 1 6.2642 8.3460 -1.7606 42 1 6.6324 6.6606 -1.1087 43 1 7.1316 5.8583 -3.4632 44 1 6.7636 7.5433 -4.1161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434572969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:36 Heat of formation + Delta-G solvation = -87.154431 kcal Electronic energy + Delta-G solvation = -26620.065106 eV Core-core repulsion = 22893.551032 eV Total energy + Delta-G solvation = -3726.514074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.40350 -37.18034 -36.90146 -36.03187 -35.61411 -35.22665 -31.99066 -30.82018 -30.47719 -28.81425 -27.00289 -25.03095 -24.45995 -22.39010 -21.43224 -20.39208 -19.68452 -18.85846 -18.37557 -16.94300 -16.89008 -16.11493 -15.76800 -15.47358 -15.28465 -14.66320 -14.24377 -14.16336 -13.91560 -13.73622 -13.46256 -13.30705 -12.87355 -12.72350 -12.56313 -12.33291 -12.21421 -12.13274 -11.80803 -11.73482 -11.57795 -11.42306 -11.35212 -11.03922 -10.97695 -10.77698 -10.65538 -10.39613 -10.09753 -9.92739 -9.74298 -9.51963 -9.36383 -8.66610 -8.50537 -8.35444 -6.47018 -4.26045 0.88511 2.35825 2.83406 3.25336 3.43856 3.47749 3.64700 4.32408 4.42511 4.47772 4.60917 4.72720 4.76838 4.79963 4.87845 4.96241 5.02114 5.08164 5.23025 5.45138 5.48805 5.56109 5.58441 5.66420 5.70607 5.73177 5.78541 5.88750 6.02887 6.09405 6.13838 6.20407 6.33004 6.43759 6.51671 6.73559 6.88149 7.00235 7.15705 7.22739 7.94014 8.01350 8.31759 8.75356 9.52923 10.92942 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.004427 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.188661 B = 6323.573383 C = 6946.211521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.730 5.730 4 C 0.526 3.474 5 O -0.531 6.531 6 C 0.171 3.829 7 C -0.183 4.183 8 C -0.181 4.181 9 N -1.128 6.128 10 S 2.617 3.383 11 O -0.964 6.964 12 O -0.941 6.941 13 C -0.579 4.579 14 C 0.021 3.979 15 C -0.591 4.591 16 H 0.062 0.938 17 C 0.039 3.961 18 N -0.898 5.898 19 Si 1.062 2.938 20 H -0.281 1.281 21 H -0.281 1.281 22 H -0.285 1.285 23 C -0.192 4.192 24 C -0.163 4.163 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.403 0.597 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.117 0.883 37 H 0.409 0.591 38 H 0.125 0.875 39 H 0.113 0.887 40 H 0.275 0.725 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.920 -11.491 10.706 16.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.011 4.011 3 N -0.383 5.383 4 C 0.310 3.690 5 O -0.406 6.406 6 C 0.079 3.921 7 C -0.242 4.242 8 C -0.240 4.240 9 N -0.885 5.885 10 S 2.714 3.286 11 O -0.955 6.955 12 O -0.932 6.932 13 C -0.712 4.712 14 C 0.019 3.981 15 C -0.628 4.628 16 H 0.080 0.920 17 C -0.168 4.168 18 N -0.531 5.531 19 Si 0.889 3.111 20 H -0.207 1.207 21 H -0.207 1.207 22 H -0.211 1.211 23 C -0.229 4.229 24 C -0.203 4.203 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.238 0.762 31 H 0.098 0.902 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.242 0.758 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -4.342 -10.889 9.803 15.282 hybrid contribution 0.451 -0.918 0.743 1.264 sum -3.891 -11.808 10.547 16.303 Atomic orbital electron populations 1.22031 0.94256 1.03337 1.02877 1.21349 0.94444 0.82742 1.02550 1.46110 1.07332 1.09237 1.75669 1.20509 0.82316 0.90844 0.75306 1.90703 1.55289 1.45621 1.49027 1.20241 0.90718 0.87311 0.93784 1.22671 0.94416 1.04539 1.02529 1.22691 1.03188 1.05745 0.92364 1.56340 1.29918 1.33995 1.68229 1.04935 0.76422 0.71381 0.75901 1.93426 1.80665 1.77781 1.43586 1.93572 1.44712 1.73762 1.81115 1.30526 1.16110 1.07379 1.17144 1.18557 0.89447 0.89500 1.00612 1.21383 1.24187 1.21346 0.95905 0.91997 1.25804 0.98547 0.98904 0.93522 1.70772 1.26776 1.16050 1.39549 0.83652 0.76190 0.75028 0.76219 1.20672 1.20677 1.21140 1.23072 1.05792 1.00808 0.93214 1.22784 1.00037 1.01329 0.96111 0.90685 0.91845 0.91642 0.91262 0.91367 0.76208 0.90157 0.88736 0.90450 0.91899 0.91179 0.86510 0.75753 0.85665 0.86839 0.91343 0.89273 0.90557 0.91136 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.99 10.03 37.16 0.37 -0.62 16 2 C 0.11 0.96 6.39 -4.04 -0.03 0.93 16 3 N -0.73 -7.34 5.27 -60.29 -0.32 -7.66 16 4 C 0.53 6.83 6.68 -10.98 -0.07 6.76 16 5 O -0.53 -8.32 15.89 5.56 0.09 -8.23 16 6 C 0.17 2.27 1.01 -132.97 -0.13 2.13 16 7 C -0.18 -2.44 6.45 37.16 0.24 -2.20 16 8 C -0.18 -2.28 8.37 37.16 0.31 -1.97 16 9 N -1.13 -15.87 5.28 -0.40 0.00 -15.87 16 10 S 2.62 49.91 4.71 -107.50 -0.51 49.40 16 11 O -0.96 -19.05 14.38 -57.54 -0.83 -19.88 16 12 O -0.94 -21.70 17.43 -57.54 -1.00 -22.70 16 13 C -0.58 -11.57 5.16 37.16 0.19 -11.38 16 14 C 0.02 0.50 0.98 -155.66 -0.15 0.35 16 15 C -0.59 -16.05 7.79 -34.44 -0.27 -16.32 16 16 H 0.06 1.73 7.82 -52.49 -0.41 1.32 16 17 C 0.04 1.09 5.38 -17.82 -0.10 0.99 16 18 N -0.90 -25.52 13.56 55.43 0.75 -24.77 16 19 Si 1.06 24.97 29.91 -169.99 -5.08 19.88 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.37 7.11 56.52 0.40 -5.96 16 23 C -0.19 -4.03 9.95 -26.69 -0.27 -4.29 16 24 C -0.16 -3.57 8.55 -26.69 -0.23 -3.79 16 25 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.35 8.14 -51.92 -0.42 -0.08 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.40 3.36 7.07 -40.82 -0.29 3.07 16 31 H 0.08 1.07 6.06 -51.93 -0.31 0.76 16 32 H 0.09 1.17 7.51 -51.93 -0.39 0.78 16 33 H 0.08 1.02 7.10 -51.93 -0.37 0.65 16 34 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.12 1.69 5.32 -51.93 -0.28 1.41 16 37 H 0.41 4.86 7.14 -34.47 -0.25 4.61 16 38 H 0.13 2.59 8.02 -51.93 -0.42 2.18 16 39 H 0.11 1.89 4.39 -51.92 -0.23 1.66 16 40 H 0.28 7.62 6.29 -40.82 -0.26 7.36 16 41 H 0.09 1.88 8.14 -51.93 -0.42 1.45 16 42 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 43 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 44 H 0.09 2.08 8.14 -51.93 -0.42 1.66 16 LS Contribution 360.77 15.07 5.44 5.44 Total: -1.00 -34.03 360.77 -8.23 -42.27 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -6.64 Total: 11.52 kcal Atomic # 6 Polarization: -29.27 SS G_CDS: -0.13 Total: -29.40 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.43 Total: -48.30 kcal Atomic # 8 Polarization: -49.07 SS G_CDS: -1.74 Total: -50.81 kcal Atomic # 14 Polarization: 24.97 SS G_CDS: -5.08 Total: 19.88 kcal Atomic # 16 Polarization: 49.91 SS G_CDS: -0.51 Total: 49.40 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.03 -8.23 -42.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434572969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.888 kcal (2) G-P(sol) polarization free energy of solvation -34.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds