Wall clock time and date at job start Tue Mar 31 2020 13:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47246 * 2 1 4 4 C 1.34776 * 120.00198 * 180.02562 * 3 2 1 5 5 O 1.21274 * 120.00184 * 359.97438 * 4 3 2 6 6 C 1.50709 * 119.99814 * 179.97438 * 4 3 2 7 7 C 1.52999 * 109.46686 * 204.99790 * 6 4 3 8 8 C 1.53000 * 109.46848 * 85.00186 * 6 4 3 9 9 N 1.46495 * 109.47009 * 324.99826 * 6 4 3 10 10 S 1.65602 * 119.99605 * 188.62321 * 9 6 4 11 11 O 1.42103 * 104.28049 * 318.92489 * 10 9 6 12 12 O 1.42099 * 104.27629 * 191.06889 * 10 9 6 13 13 C 1.81399 * 104.44843 * 74.99940 * 10 9 6 14 14 C 1.53004 * 109.46936 * 183.04930 * 13 10 9 15 15 C 1.50700 * 115.54952 * 299.07273 * 14 13 10 16 16 H 1.07991 * 120.00081 * 93.71246 * 15 14 13 17 17 C 1.37878 * 119.99713 * 273.71090 * 15 14 13 18 18 N 1.31516 * 120.00390 * 6.15705 * 17 15 14 19 19 Si 1.86796 * 119.99805 * 186.16043 * 17 15 14 20 20 H 1.48505 * 109.47310 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47035 * 299.99954 * 19 17 15 22 22 H 1.48507 * 109.47197 * 60.00052 * 19 17 15 23 23 C 1.53002 * 117.49699 * 84.74540 * 14 13 10 24 24 C 1.53002 * 117.49708 * 153.40383 * 14 13 10 25 25 H 1.09003 * 109.46990 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.47074 * 299.99986 * 1 2 3 27 27 H 1.08997 * 109.47271 * 59.99881 * 1 2 3 28 28 H 1.09001 * 109.47485 * 240.00085 * 2 1 3 29 29 H 1.09002 * 109.47481 * 119.99679 * 2 1 3 30 30 H 0.97005 * 119.99772 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46952 * 189.52079 * 7 6 4 32 32 H 1.08998 * 109.47400 * 309.52328 * 7 6 4 33 33 H 1.09003 * 109.46851 * 69.52547 * 7 6 4 34 34 H 1.09000 * 109.47053 * 300.00074 * 8 6 4 35 35 H 1.08998 * 109.46981 * 59.99477 * 8 6 4 36 36 H 1.08997 * 109.47193 * 180.02562 * 8 6 4 37 37 H 0.96995 * 120.00540 * 8.62917 * 9 6 4 38 38 H 1.08998 * 109.47351 * 63.04547 * 13 10 9 39 39 H 1.08999 * 109.46909 * 303.04672 * 13 10 9 40 40 H 0.97007 * 119.99639 * 355.20598 * 18 17 15 41 41 H 1.08998 * 117.49313 * 215.00164 * 23 14 13 42 42 H 1.08993 * 117.50240 * 0.02562 * 23 14 13 43 43 H 1.09000 * 117.49819 * 359.97438 * 24 14 13 44 44 H 1.09001 * 117.49778 * 144.97115 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7058 -0.0005 6 6 3.8457 3.0485 -0.0011 7 6 5.2481 3.0933 -0.6112 8 6 3.8976 3.5715 1.4358 9 7 2.9415 3.8857 -0.7933 10 16 3.3574 5.4492 -1.1467 11 8 3.9298 5.9404 0.0577 12 8 2.1676 6.0169 -1.6771 13 6 4.6223 5.3002 -2.4383 14 6 5.1474 6.6908 -2.8007 15 6 4.1217 7.6512 -3.3455 16 1 3.6133 8.3329 -2.6800 17 6 3.8326 7.6594 -4.6935 18 7 4.3599 6.7508 -5.4848 19 14 2.6919 8.9611 -5.3961 20 1 2.5446 8.7529 -6.8591 21 1 1.3616 8.8574 -4.7445 22 1 3.2632 10.3084 -5.1435 23 6 6.2686 7.2702 -1.9356 24 6 6.5698 6.7862 -3.3563 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.3880 2.1185 -0.0004 31 1 5.6788 4.0830 -0.4596 32 1 5.8779 2.3453 -0.1296 33 1 5.1866 2.8835 -1.6791 34 1 2.8986 3.5395 1.8704 35 1 4.5704 2.9485 2.0251 36 1 4.2605 4.5993 1.4354 37 1 2.0992 3.5243 -1.1108 38 1 4.1862 4.8347 -3.3221 39 1 5.4446 4.6854 -2.0722 40 1 5.0059 6.1180 -5.1338 41 1 6.2642 8.3460 -1.7606 42 1 6.6324 6.6606 -1.1087 43 1 7.1316 5.8583 -3.4632 44 1 6.7636 7.5433 -4.1161 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434572969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:15:35 Heat of formation + Delta-G solvation = -112.854350 kcal Electronic energy + Delta-G solvation = -26621.179538 eV Core-core repulsion = 22893.551032 eV Total energy + Delta-G solvation = -3727.628506 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.42626 -38.91532 -38.31147 -37.39260 -36.82593 -36.47661 -34.02406 -31.70292 -31.49163 -30.28501 -28.17574 -26.99660 -25.38187 -23.19763 -23.14203 -21.80667 -21.16050 -20.27604 -19.53161 -18.79242 -18.23635 -17.23196 -16.95546 -16.67087 -16.61737 -15.90343 -15.67465 -15.60252 -15.24369 -15.09755 -14.94165 -14.56902 -14.32360 -13.95256 -13.78206 -13.50222 -13.40820 -13.21764 -12.99490 -12.92364 -12.72892 -12.72302 -12.65850 -12.55746 -12.41255 -12.31891 -12.27856 -12.05306 -11.92581 -11.53580 -10.95778 -10.77720 -10.55954 -10.51786 -10.23301 -10.12132 -8.60057 -6.38168 -0.63717 1.30419 1.53375 1.59833 1.79043 1.84860 2.01933 2.55033 2.87301 3.13527 3.17588 3.30650 3.37766 3.71152 3.78477 3.83363 3.99407 4.10517 4.17715 4.20181 4.36428 4.41616 4.48703 4.51682 4.63159 4.65806 4.77947 4.84183 4.85340 4.89295 5.02593 5.02710 5.10536 5.24334 5.26981 5.34645 5.39743 5.43925 5.79947 6.03109 6.17900 6.34067 6.65783 6.99654 7.44698 8.81717 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.004427 C = 0.004030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.188661 B = 6323.573383 C = 6946.211521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.108 3.892 3 N -0.719 5.719 4 C 0.528 3.472 5 O -0.559 6.559 6 C 0.169 3.831 7 C -0.192 4.192 8 C -0.182 4.182 9 N -1.111 6.111 10 S 2.635 3.365 11 O -0.971 6.971 12 O -0.986 6.986 13 C -0.580 4.580 14 C -0.013 4.013 15 C -0.602 4.602 16 H 0.042 0.958 17 C -0.003 4.003 18 N -0.920 5.920 19 Si 1.092 2.908 20 H -0.278 1.278 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.178 4.178 24 C -0.160 4.160 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.411 0.589 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.100 0.900 37 H 0.420 0.580 38 H 0.114 0.886 39 H 0.146 0.854 40 H 0.271 0.729 41 H 0.083 0.917 42 H 0.106 0.894 43 H 0.095 0.905 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.176 -12.584 11.834 17.772 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.015 4.015 3 N -0.372 5.372 4 C 0.312 3.688 5 O -0.437 6.437 6 C 0.077 3.923 7 C -0.250 4.250 8 C -0.241 4.241 9 N -0.872 5.872 10 S 2.732 3.268 11 O -0.961 6.961 12 O -0.976 6.976 13 C -0.711 4.711 14 C -0.015 4.015 15 C -0.640 4.640 16 H 0.060 0.940 17 C -0.206 4.206 18 N -0.555 5.555 19 Si 0.914 3.086 20 H -0.203 1.203 21 H -0.204 1.204 22 H -0.194 1.194 23 C -0.215 4.215 24 C -0.199 4.199 25 H 0.107 0.893 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.248 0.752 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.118 0.882 37 H 0.256 0.744 38 H 0.132 0.868 39 H 0.164 0.836 40 H 0.082 0.918 41 H 0.101 0.899 42 H 0.124 0.876 43 H 0.114 0.886 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.621 -11.968 10.936 16.858 hybrid contribution 0.538 -0.643 0.481 0.966 sum -4.083 -12.611 11.417 17.494 Atomic orbital electron populations 1.22005 0.92059 1.04454 1.03300 1.21502 0.96217 0.81593 1.02153 1.46134 1.06577 1.10431 1.74081 1.20381 0.83016 0.90147 0.75277 1.90696 1.56169 1.46106 1.50747 1.20378 0.90476 0.87397 0.94000 1.22746 0.94645 1.04883 1.02733 1.22689 1.04430 1.04886 0.92106 1.55849 1.30592 1.32664 1.68086 1.04150 0.75362 0.72090 0.75244 1.93426 1.80613 1.78739 1.43338 1.93514 1.46580 1.75684 1.81838 1.30491 1.17645 1.05690 1.17308 1.18649 0.89471 0.90724 1.02627 1.21601 1.24794 1.21762 0.95794 0.93966 1.26829 0.99512 0.99929 0.94294 1.70845 1.27899 1.16975 1.39786 0.83275 0.75135 0.74232 0.75911 1.20259 1.20412 1.19367 1.23148 1.03745 1.00993 0.93642 1.22742 0.99243 1.01857 0.96087 0.89263 0.91091 0.91507 0.92025 0.91443 0.75163 0.90141 0.87707 0.90439 0.90559 0.89586 0.88168 0.74353 0.86783 0.83585 0.91795 0.89863 0.87559 0.88644 0.91505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 10.03 71.98 0.72 -0.79 16 2 C 0.11 1.64 6.39 86.38 0.55 2.19 16 3 N -0.72 -13.00 5.27 -463.05 -2.44 -15.44 16 4 C 0.53 12.70 6.68 87.66 0.59 13.29 16 5 O -0.56 -16.62 15.89 -3.01 -0.05 -16.67 16 6 C 0.17 4.14 1.01 2.86 0.00 4.14 16 7 C -0.19 -4.71 6.45 71.98 0.46 -4.25 16 8 C -0.18 -4.18 8.37 71.98 0.60 -3.57 16 9 N -1.11 -29.60 5.28 -155.18 -0.82 -30.42 16 10 S 2.64 98.46 4.71 -56.49 -0.27 98.19 16 11 O -0.97 -37.16 14.38 -127.65 -1.84 -39.00 16 12 O -0.99 -45.65 17.43 -127.65 -2.22 -47.87 16 13 C -0.58 -22.66 5.16 71.98 0.37 -22.29 16 14 C -0.01 -0.58 0.98 -52.93 -0.05 -0.64 16 15 C -0.60 -33.08 7.79 25.60 0.20 -32.88 16 16 H 0.04 2.42 7.82 -2.92 -0.02 2.39 16 17 C 0.00 -0.18 5.38 84.65 0.46 0.28 16 18 N -0.92 -52.79 13.56 21.45 0.29 -52.50 16 19 Si 1.09 50.53 29.91 68.60 2.05 52.58 16 20 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 21 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 23 C -0.18 -7.24 9.95 30.62 0.30 -6.93 16 24 C -0.16 -6.86 8.55 30.62 0.26 -6.60 16 25 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.07 0.58 8.14 -2.38 -0.02 0.56 16 27 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.41 5.93 7.07 -92.70 -0.66 5.27 16 31 H 0.08 1.96 6.06 -2.39 -0.01 1.94 16 32 H 0.10 2.38 7.51 -2.39 -0.02 2.36 16 33 H 0.08 1.89 7.10 -2.39 -0.02 1.87 16 34 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 35 H 0.09 1.69 8.14 -2.39 -0.02 1.68 16 36 H 0.10 2.71 5.32 -2.39 -0.01 2.69 16 37 H 0.42 9.34 7.14 -96.75 -0.69 8.65 16 38 H 0.11 4.71 8.02 -2.39 -0.02 4.69 16 39 H 0.15 4.59 4.39 -2.39 -0.01 4.58 16 40 H 0.27 15.17 6.29 -92.70 -0.58 14.59 16 41 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 42 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 43 H 0.10 3.55 8.14 -2.39 -0.02 3.53 16 44 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -73.10 360.77 -0.96 -74.06 By element: Atomic # 1 Polarization: 35.24 SS G_CDS: -0.14 Total: 35.10 kcal Atomic # 6 Polarization: -62.51 SS G_CDS: 4.47 Total: -58.04 kcal Atomic # 7 Polarization: -95.39 SS G_CDS: -2.97 Total: -98.36 kcal Atomic # 8 Polarization: -99.43 SS G_CDS: -4.11 Total: -103.54 kcal Atomic # 14 Polarization: 50.53 SS G_CDS: 2.05 Total: 52.58 kcal Atomic # 16 Polarization: 98.46 SS G_CDS: -0.27 Total: 98.19 kcal Total: -73.10 -0.96 -74.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434572969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.793 kcal (2) G-P(sol) polarization free energy of solvation -73.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds