Wall clock time and date at job start Tue Mar 31 2020 12:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47388 * 2 1 4 4 C 1.50709 * 109.46728 * 240.00197 * 2 1 3 5 5 H 1.07996 * 119.99790 * 239.99742 * 4 2 1 6 6 C 1.37878 * 119.99667 * 59.99956 * 4 2 1 7 7 N 1.31515 * 120.00320 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99719 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46911 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47216 * 119.99893 * 8 6 4 11 11 H 1.48499 * 109.47126 * 240.00029 * 8 6 4 12 12 N 1.46499 * 109.47476 * 120.00371 * 2 1 3 13 13 C 1.46503 * 120.00081 * 59.99712 * 12 2 1 14 14 S 1.65601 * 119.99826 * 239.99477 * 12 2 1 15 15 O 1.42104 * 106.39979 * 156.45784 * 14 12 2 16 16 O 1.42100 * 106.40210 * 23.54611 * 14 12 2 17 17 N 1.65594 * 107.22259 * 269.99918 * 14 12 2 18 18 C 1.46506 * 119.99644 * 64.99963 * 17 14 12 19 19 H 1.09002 * 115.55742 * 0.58584 * 18 17 14 20 20 C 1.53064 * 117.50311 * 146.29421 * 18 17 14 21 21 C 1.52697 * 59.93396 * 107.50013 * 20 18 17 22 22 C 1.53242 * 117.88528 * 107.77165 * 21 20 18 23 23 C 1.53327 * 108.49401 * 196.24954 * 22 21 20 24 24 O 1.42873 * 109.32149 * 306.04056 * 23 22 21 25 25 C 1.42867 * 114.52895 * 64.35706 * 24 23 22 26 26 C 1.53253 * 117.87925 * 252.22489 * 21 20 18 27 27 H 1.08999 * 109.46505 * 299.99274 * 1 2 3 28 28 H 1.08992 * 109.47531 * 59.99525 * 1 2 3 29 29 H 1.09005 * 109.46959 * 180.02562 * 1 2 3 30 30 H 0.96998 * 119.99617 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47013 * 270.00162 * 13 12 2 32 32 H 1.08996 * 109.46941 * 29.99990 * 13 12 2 33 33 H 1.09000 * 109.46689 * 150.00136 * 13 12 2 34 34 H 0.96997 * 120.00310 * 245.00570 * 17 14 12 35 35 H 1.09004 * 117.50316 * 214.96323 * 20 18 17 36 36 H 1.08995 * 117.51064 * 0.02685 * 20 18 17 37 37 H 1.09006 * 109.63633 * 315.95182 * 22 21 20 38 38 H 1.08995 * 109.63444 * 76.54814 * 22 21 20 39 39 H 1.08995 * 109.50075 * 186.07904 * 23 22 21 40 40 H 1.09005 * 109.52069 * 66.00798 * 23 22 21 41 41 H 1.08994 * 109.49679 * 175.68126 * 25 24 23 42 42 H 1.08998 * 109.52199 * 55.60869 * 25 24 23 43 43 H 1.08997 * 109.63369 * 283.45042 * 26 21 20 44 44 H 1.09006 * 109.63453 * 44.05177 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3210 -1.1202 -4.0081 9 1 3.1462 -2.2869 -3.6040 10 1 1.1657 -1.5865 -4.8161 11 1 3.1463 -0.1873 -4.8167 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9706 0.1141 2.2861 15 8 2.8230 -0.5647 3.5257 16 8 2.6905 1.4972 2.1192 17 7 4.5439 -0.1043 1.8178 18 6 5.0140 0.4530 0.5470 19 1 4.2708 1.0060 -0.0275 20 6 6.4636 0.9398 0.4818 21 6 6.0559 -0.3468 -0.2323 22 6 5.9779 -0.3233 -1.7625 23 6 5.1784 -1.5462 -2.2276 24 8 5.7570 -2.7285 -1.6720 25 6 5.6912 -2.8079 -0.2471 26 6 6.5284 -1.6775 0.3632 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.7079 1.1609 -3.4844 31 1 0.7377 -2.1445 1.9993 32 1 1.5295 -2.5969 0.4707 33 1 2.4630 -2.5819 1.9862 34 1 5.1542 -0.6012 2.3848 35 1 6.6741 1.8132 -0.1356 36 1 7.0676 0.8451 1.3842 37 1 5.4770 0.5878 -2.0899 38 1 6.9835 -0.3624 -2.1812 39 1 5.2039 -1.6053 -3.3156 40 1 4.1451 -1.4548 -1.8924 41 1 6.0837 -3.7699 0.0822 42 1 4.6549 -2.7081 0.0758 43 1 7.5809 -1.8319 0.1256 44 1 6.3922 -1.6638 1.4446 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434573236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:54 Heat of formation + Delta-G solvation = -94.237634 kcal Electronic energy + Delta-G solvation = -28084.299361 eV Core-core repulsion = 24357.478136 eV Total energy + Delta-G solvation = -3726.821225 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.66597 -36.91276 -36.64539 -36.20019 -35.29757 -32.71363 -32.53885 -30.94599 -29.29663 -29.13133 -25.57406 -25.37241 -23.53768 -22.74064 -21.89279 -20.83113 -19.00488 -18.78323 -17.26809 -16.81204 -16.49903 -16.25738 -15.82679 -15.42476 -15.10003 -14.49368 -14.43885 -14.09890 -13.55322 -13.26685 -13.22971 -12.83593 -12.79233 -12.37053 -12.12386 -11.91730 -11.86613 -11.71363 -11.57734 -11.44491 -11.43710 -11.26785 -11.12681 -11.00957 -10.84730 -10.56994 -10.40839 -10.33210 -10.30381 -10.17963 -9.82023 -9.25081 -8.89156 -8.58793 -8.57571 -8.01461 -6.19158 -4.27650 1.17545 3.14678 3.26805 3.28180 3.40944 3.93767 4.11675 4.21522 4.24953 4.74721 4.85572 4.95666 5.09084 5.11595 5.13885 5.30129 5.41009 5.53179 5.63622 5.66497 5.80466 5.87306 5.91211 5.93293 6.06285 6.13163 6.16360 6.28961 6.34318 6.39010 6.51514 6.56624 6.61194 6.83506 6.84080 7.07440 7.16592 7.45807 7.54427 7.58620 7.69943 7.97596 8.18276 8.75341 9.37922 10.85470 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.009358 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.469079 B = 2991.253906 C = 4528.706162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.526 4.526 5 H 0.070 0.930 6 C 0.070 3.930 7 N -0.882 5.882 8 Si 0.872 3.128 9 H -0.258 1.258 10 H -0.287 1.287 11 H -0.281 1.281 12 N -0.989 5.989 13 C 0.108 3.892 14 S 2.782 3.218 15 O -0.999 6.999 16 O -0.979 6.979 17 N -1.100 6.100 18 C 0.116 3.884 19 H 0.146 0.854 20 C -0.184 4.184 21 C -0.131 4.131 22 C -0.111 4.111 23 C 0.037 3.963 24 O -0.387 6.387 25 C 0.064 3.936 26 C -0.110 4.110 27 H 0.011 0.989 28 H 0.092 0.908 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.048 0.952 34 H 0.406 0.594 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.085 0.915 42 H 0.057 0.943 43 H 0.070 0.930 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.007 -3.890 3.856 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.164 3.836 3 H 0.076 0.924 4 C -0.565 4.565 5 H 0.087 0.913 6 C -0.134 4.134 7 N -0.519 5.519 8 Si 0.699 3.301 9 H -0.182 1.182 10 H -0.213 1.213 11 H -0.207 1.207 12 N -0.832 5.832 13 C -0.039 4.039 14 S 2.791 3.209 15 O -0.983 6.983 16 O -0.962 6.962 17 N -0.855 5.855 18 C 0.008 3.992 19 H 0.163 0.837 20 C -0.223 4.223 21 C -0.133 4.133 22 C -0.149 4.149 23 C -0.039 4.039 24 O -0.306 6.306 25 C -0.013 4.013 26 C -0.148 4.148 27 H 0.031 0.969 28 H 0.111 0.889 29 H 0.052 0.948 30 H 0.074 0.926 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.067 0.933 34 H 0.239 0.761 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.098 0.902 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.089 0.911 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 8.546 -3.298 4.282 10.112 hybrid contribution 0.648 -0.623 -0.883 1.260 sum 9.195 -3.921 3.399 10.558 Atomic orbital electron populations 1.22049 0.97956 0.99699 1.00741 1.18752 0.91982 0.92608 0.80255 0.92450 1.21423 1.31899 1.13198 0.89959 0.91256 1.24871 0.94957 0.94828 0.98708 1.69878 1.35857 1.22440 1.23756 0.86985 0.79050 0.80577 0.83463 1.18173 1.21303 1.20692 1.57695 1.64238 1.21421 1.39811 1.21172 0.98950 0.81898 1.01836 1.01852 0.72541 0.73783 0.72727 1.93555 1.85839 1.76220 1.42658 1.93592 1.83734 1.32391 1.86482 1.55747 1.30606 1.69542 1.29578 1.21491 0.92496 0.99502 0.85751 0.83651 1.23498 0.98585 0.97785 1.02472 1.21816 1.04398 0.92497 0.94634 1.21728 1.00844 1.00098 0.92182 1.23314 0.99370 0.83455 0.97786 1.87777 1.81362 1.41595 1.19856 1.22510 0.99625 0.97525 0.81626 1.21672 1.00131 0.93547 0.99472 0.96948 0.88919 0.94845 0.92608 0.93873 0.90164 0.93288 0.76062 0.88096 0.88772 0.90243 0.91522 0.90091 0.88230 0.89698 0.92430 0.91150 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.97 37.16 0.33 -2.94 16 2 C 0.27 5.99 2.62 -69.08 -0.18 5.80 16 3 H 0.06 1.43 6.83 -51.93 -0.35 1.08 16 4 C -0.53 -11.98 7.10 -34.44 -0.24 -12.22 16 5 H 0.07 1.54 5.44 -52.49 -0.29 1.25 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.58 16 7 N -0.88 -22.56 11.32 55.43 0.63 -21.93 16 8 Si 0.87 18.70 26.65 -169.99 -4.53 14.17 16 9 H -0.26 -5.30 5.89 56.52 0.33 -4.96 16 10 H -0.29 -6.41 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 12 N -0.99 -19.12 3.12 -115.85 -0.36 -19.48 16 13 C 0.11 1.82 9.28 59.85 0.56 2.37 16 14 S 2.78 52.15 6.07 -107.50 -0.65 51.50 16 15 O -1.00 -19.79 17.21 -57.17 -0.98 -20.77 16 16 O -0.98 -21.62 16.45 -57.17 -0.94 -22.56 16 17 N -1.10 -16.67 5.73 -4.98 -0.03 -16.70 16 18 C 0.12 1.80 6.17 -68.03 -0.42 1.38 16 19 H 0.15 2.63 8.01 -51.93 -0.42 2.21 16 20 C -0.18 -2.35 9.93 -26.85 -0.27 -2.62 16 21 C -0.13 -1.83 2.03 -154.55 -0.31 -2.14 16 22 C -0.11 -1.66 5.92 -26.44 -0.16 -1.81 16 23 C 0.04 0.63 5.19 37.33 0.19 0.82 16 24 O -0.39 -6.52 10.69 -35.23 -0.38 -6.89 16 25 C 0.06 0.90 6.85 37.33 0.26 1.16 16 26 C -0.11 -1.39 5.73 -26.43 -0.15 -1.54 16 27 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.09 2.29 6.07 -51.93 -0.32 1.97 16 29 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 30 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.37 7.02 -51.93 -0.36 1.00 16 33 H 0.05 0.72 7.79 -51.93 -0.40 0.31 16 34 H 0.41 5.10 7.29 -34.47 -0.25 4.85 16 35 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 36 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 37 H 0.08 1.21 8.08 -51.93 -0.42 0.79 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 1.38 7.10 -51.93 -0.37 1.02 16 40 H 0.10 1.91 3.15 -51.93 -0.16 1.75 16 41 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.07 0.75 6.31 -51.93 -0.33 0.42 16 LS Contribution 346.63 15.07 5.22 5.22 Total: -1.00 -28.42 346.63 -9.17 -37.59 By element: Atomic # 1 Polarization: 16.67 SS G_CDS: -6.65 Total: 10.02 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -0.49 Total: -10.16 kcal Atomic # 7 Polarization: -58.35 SS G_CDS: 0.24 Total: -58.11 kcal Atomic # 8 Polarization: -47.92 SS G_CDS: -2.30 Total: -50.22 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.53 Total: 14.17 kcal Atomic # 16 Polarization: 52.15 SS G_CDS: -0.65 Total: 51.50 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.42 -9.17 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434573236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.649 kcal (2) G-P(sol) polarization free energy of solvation -28.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds