Wall clock time and date at job start Tue Mar 31 2020 12:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.47388 * 2 1 4 4 C 1.50709 * 109.46728 * 240.00197 * 2 1 3 5 5 H 1.07996 * 119.99790 * 239.99742 * 4 2 1 6 6 C 1.37878 * 119.99667 * 59.99956 * 4 2 1 7 7 N 1.31515 * 120.00320 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99719 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.46911 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47216 * 119.99893 * 8 6 4 11 11 H 1.48499 * 109.47126 * 240.00029 * 8 6 4 12 12 N 1.46499 * 109.47476 * 120.00371 * 2 1 3 13 13 C 1.46503 * 120.00081 * 59.99712 * 12 2 1 14 14 S 1.65601 * 119.99826 * 239.99477 * 12 2 1 15 15 O 1.42104 * 106.39979 * 156.45784 * 14 12 2 16 16 O 1.42100 * 106.40210 * 23.54611 * 14 12 2 17 17 N 1.65594 * 107.22259 * 269.99918 * 14 12 2 18 18 C 1.46506 * 119.99644 * 64.99963 * 17 14 12 19 19 H 1.09002 * 115.55742 * 0.58584 * 18 17 14 20 20 C 1.53064 * 117.50311 * 146.29421 * 18 17 14 21 21 C 1.52697 * 59.93396 * 107.50013 * 20 18 17 22 22 C 1.53242 * 117.88528 * 107.77165 * 21 20 18 23 23 C 1.53327 * 108.49401 * 196.24954 * 22 21 20 24 24 O 1.42873 * 109.32149 * 306.04056 * 23 22 21 25 25 C 1.42867 * 114.52895 * 64.35706 * 24 23 22 26 26 C 1.53253 * 117.87925 * 252.22489 * 21 20 18 27 27 H 1.08999 * 109.46505 * 299.99274 * 1 2 3 28 28 H 1.08992 * 109.47531 * 59.99525 * 1 2 3 29 29 H 1.09005 * 109.46959 * 180.02562 * 1 2 3 30 30 H 0.96998 * 119.99617 * 180.02562 * 7 6 4 31 31 H 1.09001 * 109.47013 * 270.00162 * 13 12 2 32 32 H 1.08996 * 109.46941 * 29.99990 * 13 12 2 33 33 H 1.09000 * 109.46689 * 150.00136 * 13 12 2 34 34 H 0.96997 * 120.00310 * 245.00570 * 17 14 12 35 35 H 1.09004 * 117.50316 * 214.96323 * 20 18 17 36 36 H 1.08995 * 117.51064 * 0.02685 * 20 18 17 37 37 H 1.09006 * 109.63633 * 315.95182 * 22 21 20 38 38 H 1.08995 * 109.63444 * 76.54814 * 22 21 20 39 39 H 1.08995 * 109.50075 * 186.07904 * 23 22 21 40 40 H 1.09005 * 109.52069 * 66.00798 * 23 22 21 41 41 H 1.08994 * 109.49679 * 175.68126 * 25 24 23 42 42 H 1.08998 * 109.52199 * 55.60869 * 25 24 23 43 43 H 1.08997 * 109.63369 * 283.45042 * 26 21 20 44 44 H 1.09006 * 109.63453 * 44.05177 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6991 -0.2393 -2.4828 7 7 0.9426 0.8298 -2.6034 8 14 2.3210 -1.1202 -4.0081 9 1 3.1462 -2.2869 -3.6040 10 1 1.1657 -1.5865 -4.8161 11 1 3.1463 -0.1873 -4.8167 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0933 1.4279 14 16 2.9706 0.1141 2.2861 15 8 2.8230 -0.5647 3.5257 16 8 2.6905 1.4972 2.1192 17 7 4.5439 -0.1043 1.8178 18 6 5.0140 0.4530 0.5470 19 1 4.2708 1.0060 -0.0275 20 6 6.4636 0.9398 0.4818 21 6 6.0559 -0.3468 -0.2323 22 6 5.9779 -0.3233 -1.7625 23 6 5.1784 -1.5462 -2.2276 24 8 5.7570 -2.7285 -1.6720 25 6 5.6912 -2.8079 -0.2471 26 6 6.5284 -1.6775 0.3632 27 1 -0.3632 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 0.7079 1.1609 -3.4844 31 1 0.7377 -2.1445 1.9993 32 1 1.5295 -2.5969 0.4707 33 1 2.4630 -2.5819 1.9862 34 1 5.1542 -0.6012 2.3848 35 1 6.6741 1.8132 -0.1356 36 1 7.0676 0.8451 1.3842 37 1 5.4770 0.5878 -2.0899 38 1 6.9835 -0.3624 -2.1812 39 1 5.2039 -1.6053 -3.3156 40 1 4.1451 -1.4548 -1.8924 41 1 6.0837 -3.7699 0.0822 42 1 4.6549 -2.7081 0.0758 43 1 7.5809 -1.8319 0.1256 44 1 6.3922 -1.6638 1.4446 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434573236.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:53 Heat of formation + Delta-G solvation = -114.930480 kcal Electronic energy + Delta-G solvation = -28085.196670 eV Core-core repulsion = 24357.478136 eV Total energy + Delta-G solvation = -3727.718534 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.82085 -38.37680 -38.00130 -37.84803 -36.91000 -34.48926 -33.79978 -32.07038 -30.89196 -30.45100 -27.28668 -27.01098 -24.66454 -23.97767 -23.04324 -22.55389 -20.46093 -19.95347 -18.78612 -18.34426 -18.26299 -17.54552 -17.19430 -16.75921 -16.47554 -16.04035 -15.71921 -15.33529 -15.16781 -14.80577 -14.49902 -14.33276 -13.99470 -13.70865 -13.54990 -13.40984 -13.26389 -13.25882 -13.11078 -12.98398 -12.90445 -12.74998 -12.69514 -12.56344 -12.33261 -12.15735 -11.98889 -11.76263 -11.59660 -11.53390 -11.29745 -10.84989 -10.46408 -10.10753 -9.77749 -9.62347 -8.05851 -6.17316 -0.32168 1.40584 1.50031 1.55902 1.96590 2.45267 2.60160 2.86899 3.03430 3.24473 3.39393 3.71956 3.80023 3.92752 3.99348 4.07072 4.18998 4.25281 4.42165 4.62166 4.67009 4.72716 4.77410 4.79921 4.82733 4.87727 4.94270 5.00085 5.02112 5.08935 5.17244 5.19217 5.27616 5.32110 5.33785 5.37467 5.65772 5.73150 5.86977 6.08700 6.20063 6.34147 6.37783 6.91257 7.50711 8.99007 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010526 B = 0.009358 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2659.469079 B = 2991.253906 C = 4528.706162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.274 3.726 3 H 0.027 0.973 4 C -0.510 4.510 5 H 0.077 0.923 6 C 0.031 3.969 7 N -0.915 5.915 8 Si 0.919 3.081 9 H -0.243 1.243 10 H -0.299 1.299 11 H -0.281 1.281 12 N -0.994 5.994 13 C 0.102 3.898 14 S 2.799 3.201 15 O -1.007 7.007 16 O -1.016 7.016 17 N -1.082 6.082 18 C 0.088 3.912 19 H 0.113 0.887 20 C -0.159 4.159 21 C -0.127 4.127 22 C -0.110 4.110 23 C 0.035 3.965 24 O -0.399 6.399 25 C 0.056 3.944 26 C -0.106 4.106 27 H 0.015 0.985 28 H 0.070 0.930 29 H 0.042 0.958 30 H 0.260 0.740 31 H 0.050 0.950 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.422 0.578 35 H 0.109 0.891 36 H 0.118 0.882 37 H 0.068 0.932 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.076 0.924 41 H 0.110 0.890 42 H 0.043 0.957 43 H 0.086 0.914 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.395 -5.367 4.747 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.170 3.830 3 H 0.045 0.955 4 C -0.549 4.549 5 H 0.095 0.905 6 C -0.169 4.169 7 N -0.554 5.554 8 Si 0.746 3.254 9 H -0.167 1.167 10 H -0.226 1.226 11 H -0.207 1.207 12 N -0.836 5.836 13 C -0.044 4.044 14 S 2.808 3.192 15 O -0.991 6.991 16 O -0.999 6.999 17 N -0.842 5.842 18 C -0.021 4.021 19 H 0.131 0.869 20 C -0.198 4.198 21 C -0.129 4.129 22 C -0.148 4.148 23 C -0.041 4.041 24 O -0.318 6.318 25 C -0.021 4.021 26 C -0.143 4.143 27 H 0.034 0.966 28 H 0.088 0.912 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.258 0.742 35 H 0.127 0.873 36 H 0.137 0.863 37 H 0.087 0.913 38 H 0.103 0.897 39 H 0.095 0.905 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.062 0.938 43 H 0.105 0.895 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.949 -4.807 5.201 13.040 hybrid contribution -0.069 -0.187 -1.113 1.131 sum 10.880 -4.994 4.087 12.650 Atomic orbital electron populations 1.21959 0.98302 0.99950 0.99795 1.18425 0.91666 0.91460 0.81473 0.95504 1.21569 1.30720 1.12708 0.89873 0.90489 1.25411 0.95298 0.95288 1.00909 1.70002 1.37557 1.23991 1.23884 0.86249 0.78209 0.80194 0.80793 1.16651 1.22597 1.20731 1.57573 1.64944 1.22380 1.38687 1.21359 1.00352 0.80498 1.02193 1.01159 0.73053 0.72790 0.72228 1.93536 1.86359 1.76133 1.43085 1.93546 1.84673 1.34805 1.86910 1.55235 1.29404 1.69707 1.29809 1.21385 0.93280 1.01450 0.85956 0.86948 1.23613 0.95895 0.97324 1.02985 1.21863 1.03204 0.94000 0.93876 1.21706 1.01288 0.98583 0.93232 1.23184 0.98496 0.84723 0.97697 1.87756 1.81189 1.41354 1.21541 1.22741 0.99427 0.99574 0.80323 1.21699 1.00601 0.91675 1.00352 0.96601 0.91177 0.93873 0.93002 0.93177 0.90479 0.90751 0.74157 0.87288 0.86333 0.91322 0.89717 0.90536 0.90620 0.87173 0.93848 0.89501 0.89453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.47 8.97 71.98 0.65 -5.83 16 2 C 0.27 12.51 2.62 44.25 0.12 12.62 16 3 H 0.03 1.41 6.83 -2.39 -0.02 1.39 16 4 C -0.51 -23.42 7.10 25.60 0.18 -23.24 16 5 H 0.08 3.40 5.44 -2.91 -0.02 3.38 16 6 C 0.03 1.51 5.30 84.65 0.45 1.96 16 7 N -0.91 -48.30 11.32 21.45 0.24 -48.05 16 8 Si 0.92 38.83 26.65 68.60 1.83 40.66 16 9 H -0.24 -9.60 5.89 99.48 0.59 -9.02 16 10 H -0.30 -13.16 7.11 99.48 0.71 -12.45 16 11 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 12 N -0.99 -38.04 3.12 -520.43 -1.62 -39.67 16 13 C 0.10 3.27 9.28 127.77 1.19 4.46 16 14 S 2.80 103.04 6.07 -56.49 -0.34 102.70 16 15 O -1.01 -38.27 17.21 -128.00 -2.20 -40.47 16 16 O -1.02 -45.52 16.45 -128.00 -2.11 -47.63 16 17 N -1.08 -30.84 5.73 -169.66 -0.97 -31.82 16 18 C 0.09 2.61 6.17 44.92 0.28 2.89 16 19 H 0.11 4.16 8.01 -2.39 -0.02 4.15 16 20 C -0.16 -3.58 9.93 30.52 0.30 -3.28 16 21 C -0.13 -3.22 2.03 -52.21 -0.11 -3.33 16 22 C -0.11 -3.12 5.92 30.78 0.18 -2.94 16 23 C 0.04 1.16 5.19 72.09 0.37 1.53 16 24 O -0.40 -12.53 10.69 -148.98 -1.59 -14.12 16 25 C 0.06 1.40 6.85 72.09 0.49 1.90 16 26 C -0.11 -2.24 5.73 30.79 0.18 -2.07 16 27 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.07 3.57 6.07 -2.39 -0.01 3.56 16 29 H 0.04 1.84 7.67 -2.38 -0.02 1.82 16 30 H 0.26 13.34 8.31 -92.71 -0.77 12.56 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.53 7.02 -2.39 -0.02 2.51 16 33 H 0.07 2.00 7.79 -2.39 -0.02 1.98 16 34 H 0.42 9.26 7.29 -96.75 -0.70 8.55 16 35 H 0.11 2.31 8.14 -2.38 -0.02 2.29 16 36 H 0.12 2.13 8.14 -2.39 -0.02 2.12 16 37 H 0.07 2.07 8.08 -2.38 -0.02 2.05 16 38 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 39 H 0.08 2.53 7.10 -2.39 -0.02 2.51 16 40 H 0.08 2.86 3.15 -2.38 -0.01 2.85 16 41 H 0.11 2.19 8.14 -2.39 -0.02 2.18 16 42 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.09 1.52 6.31 -2.38 -0.02 1.51 16 Total: -1.00 -61.56 346.63 -2.30 -63.86 By element: Atomic # 1 Polarization: 29.67 SS G_CDS: 0.19 Total: 29.86 kcal Atomic # 6 Polarization: -19.60 SS G_CDS: 4.28 Total: -15.32 kcal Atomic # 7 Polarization: -117.18 SS G_CDS: -2.35 Total: -119.54 kcal Atomic # 8 Polarization: -96.32 SS G_CDS: -5.90 Total: -102.22 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.83 Total: 40.66 kcal Atomic # 16 Polarization: 103.04 SS G_CDS: -0.34 Total: 102.70 kcal Total: -61.56 -2.30 -63.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434573236.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.074 kcal (2) G-P(sol) polarization free energy of solvation -61.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds