Wall clock time and date at job start Tue Mar 31 2020 12:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31510 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47255 * 89.99971 * 8 6 4 10 10 H 1.48495 * 109.47192 * 210.00445 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00206 * 8 6 4 12 12 N 1.46506 * 109.46656 * 240.00112 * 2 1 3 13 13 C 1.46498 * 120.00239 * 299.72110 * 12 2 1 14 14 S 1.65597 * 119.99791 * 120.00335 * 12 2 1 15 15 O 1.42101 * 106.40154 * 203.53789 * 14 12 2 16 16 O 1.42106 * 106.40098 * 336.45446 * 14 12 2 17 17 N 1.65596 * 107.22389 * 89.99756 * 14 12 2 18 18 C 1.46498 * 119.99862 * 64.99463 * 17 14 12 19 19 H 1.09002 * 115.55637 * 0.68866 * 18 17 14 20 20 C 1.53062 * 117.50529 * 146.39604 * 18 17 14 21 21 C 1.52698 * 59.93518 * 107.47064 * 20 18 17 22 22 C 1.53242 * 117.88659 * 107.77376 * 21 20 18 23 23 C 1.53322 * 108.49212 * 196.25136 * 22 21 20 24 24 O 1.42870 * 109.32498 * 306.03983 * 23 22 21 25 25 C 1.42868 * 114.52976 * 64.35788 * 24 23 22 26 26 C 1.53255 * 117.87685 * 252.23143 * 21 20 18 27 27 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 28 28 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 29 29 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 30 30 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46661 * 89.99886 * 13 12 2 32 32 H 1.08993 * 109.47575 * 210.00600 * 13 12 2 33 33 H 1.09001 * 109.46870 * 330.00556 * 13 12 2 34 34 H 0.97000 * 119.99918 * 245.00321 * 17 14 12 35 35 H 1.09003 * 117.50489 * 214.93618 * 20 18 17 36 36 H 1.08995 * 117.50794 * 359.97438 * 20 18 17 37 37 H 1.09002 * 109.63327 * 315.95316 * 22 21 20 38 38 H 1.08997 * 109.63521 * 76.54935 * 22 21 20 39 39 H 1.09003 * 109.49811 * 186.08579 * 23 22 21 40 40 H 1.08997 * 109.52299 * 66.00648 * 23 22 21 41 41 H 1.09000 * 109.49762 * 175.69234 * 25 24 23 42 42 H 1.08995 * 109.52129 * 55.61002 * 25 24 23 43 43 H 1.08999 * 109.63354 * 283.44539 * 26 21 20 44 44 H 1.09001 * 109.63535 * 44.04445 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 7 2.0182 -0.6906 -1.1963 13 6 1.6693 -2.0949 -1.4251 14 16 2.9703 0.1142 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 1 4.4797 -2.2419 -2.1905 20 6 6.6241 -1.5534 -2.1813 21 6 6.1467 -1.7879 -0.7499 22 6 6.1618 -3.2241 -0.2155 23 6 5.2857 -3.2845 1.0413 24 8 5.7231 -2.2915 1.9707 25 6 5.5662 -0.9455 1.5181 26 6 6.4630 -0.7134 0.2961 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7083 1.1608 3.4844 31 1 0.7413 -2.1506 -1.9941 32 1 2.4683 -2.5814 -1.9844 33 1 1.5385 -2.5976 -0.4667 34 1 5.0732 0.6550 -1.5284 35 1 6.9474 -2.4234 -2.7529 36 1 7.1626 -0.6286 -2.3875 37 1 5.7641 -3.9006 -0.9721 38 1 7.1829 -3.5107 0.0357 39 1 5.3704 -4.2713 1.4967 40 1 4.2468 -3.0968 0.7705 41 1 5.8517 -0.2582 2.3145 42 1 4.5257 -0.7724 1.2437 43 1 7.5098 -0.7862 0.5909 44 1 6.2648 0.2738 -0.1214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434573238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:58 Heat of formation + Delta-G solvation = -99.081592 kcal Electronic energy + Delta-G solvation = -27870.978714 eV Core-core repulsion = 24143.947440 eV Total energy + Delta-G solvation = -3727.031275 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.75947 -36.96763 -36.63718 -36.18835 -35.31045 -32.65018 -32.61418 -30.93750 -29.38145 -29.12766 -25.56333 -25.27482 -23.54453 -22.80210 -22.04307 -20.82429 -19.00824 -18.88808 -17.30754 -16.80755 -16.49164 -16.23659 -15.71969 -15.37702 -15.18410 -14.73578 -14.36994 -14.09975 -13.50759 -13.36927 -13.25674 -13.00096 -12.76696 -12.44761 -12.07262 -11.99980 -11.87266 -11.71383 -11.62025 -11.55661 -11.40172 -11.26040 -11.09330 -10.98306 -10.87898 -10.61224 -10.46537 -10.42255 -10.27958 -10.13336 -9.91253 -9.29415 -8.98917 -8.69360 -8.50401 -8.00761 -6.13050 -4.21680 1.17270 3.26400 3.33893 3.34405 3.41613 3.77053 4.10321 4.21730 4.34421 4.62121 4.68428 4.79829 4.96634 5.02153 5.17541 5.18387 5.23643 5.49877 5.56322 5.61404 5.72661 5.78254 5.79428 5.84702 5.99010 6.10428 6.14740 6.17033 6.25282 6.29668 6.41100 6.55537 6.61784 6.84230 6.84451 7.07792 7.15305 7.46977 7.58574 7.59072 7.74527 8.01093 8.21860 8.81055 9.45130 10.91473 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010597 B = 0.009013 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.673960 B = 3105.759838 C = 4901.406088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.269 3.731 3 H 0.058 0.942 4 C -0.524 4.524 5 H 0.065 0.935 6 C 0.069 3.931 7 N -0.884 5.884 8 Si 0.888 3.112 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.272 1.272 12 N -0.988 5.988 13 C 0.106 3.894 14 S 2.782 3.218 15 O -0.996 6.996 16 O -0.980 6.980 17 N -1.097 6.097 18 C 0.109 3.891 19 H 0.131 0.869 20 C -0.180 4.180 21 C -0.132 4.132 22 C -0.113 4.113 23 C 0.060 3.940 24 O -0.384 6.384 25 C 0.046 3.954 26 C -0.110 4.110 27 H 0.092 0.908 28 H 0.011 0.989 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.044 0.956 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.412 0.588 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.073 0.927 39 H 0.086 0.914 40 H 0.061 0.939 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.341 -6.572 -5.622 12.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.076 0.924 4 C -0.563 4.563 5 H 0.083 0.917 6 C -0.134 4.134 7 N -0.522 5.522 8 Si 0.716 3.284 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.196 1.196 12 N -0.831 5.831 13 C -0.041 4.041 14 S 2.791 3.209 15 O -0.980 6.980 16 O -0.964 6.964 17 N -0.852 5.852 18 C -0.001 4.001 19 H 0.148 0.852 20 C -0.220 4.220 21 C -0.134 4.134 22 C -0.151 4.151 23 C -0.017 4.017 24 O -0.302 6.302 25 C -0.031 4.031 26 C -0.147 4.147 27 H 0.111 0.889 28 H 0.030 0.970 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.099 0.901 34 H 0.246 0.754 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.104 0.896 40 H 0.079 0.921 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.881 -6.121 -6.148 12.415 hybrid contribution 0.665 -0.257 1.102 1.312 sum 9.546 -6.378 -5.046 12.541 Atomic orbital electron populations 1.22052 0.97992 0.99651 1.00722 1.18735 0.91860 0.92695 0.80134 0.92431 1.21327 1.31931 1.13157 0.89928 0.91650 1.24876 0.94810 0.94842 0.98877 1.69881 1.35943 1.22553 1.23838 0.86649 0.78634 0.80465 0.82643 1.20240 1.21549 1.19634 1.57705 1.64305 1.21179 1.39861 1.21216 0.98925 0.82047 1.01865 1.01846 0.72464 0.73185 0.73419 1.93550 1.85914 1.76323 1.42193 1.93604 1.83451 1.32426 1.86901 1.55750 1.32212 1.13292 1.83941 1.21338 0.91085 0.85371 1.02269 0.85174 1.23494 0.97356 1.03458 0.97683 1.21905 1.04509 0.96704 0.90310 1.21781 1.01346 0.93609 0.98335 1.22570 0.97665 0.92054 0.89368 1.87806 1.85093 1.15137 1.42197 1.22919 1.01697 0.82963 0.95490 1.21684 1.00365 0.97161 0.95534 0.88923 0.96975 0.94878 0.92637 0.93769 0.93516 0.90093 0.75410 0.88182 0.88476 0.90955 0.90885 0.89556 0.92086 0.89593 0.88906 0.91381 0.91077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 8.97 37.16 0.33 -2.99 16 2 C 0.27 6.18 2.62 -69.08 -0.18 6.00 16 3 H 0.06 1.49 6.91 -51.93 -0.36 1.13 16 4 C -0.52 -12.41 6.68 -34.44 -0.23 -12.64 16 5 H 0.07 1.49 5.86 -52.49 -0.31 1.19 16 6 C 0.07 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.88 -23.45 11.32 55.43 0.63 -22.82 16 8 Si 0.89 20.13 29.54 -169.99 -5.02 15.10 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 N -0.99 -19.21 3.12 -115.86 -0.36 -19.57 16 13 C 0.11 1.76 9.30 59.85 0.56 2.32 16 14 S 2.78 52.32 6.07 -107.50 -0.65 51.66 16 15 O -1.00 -19.83 16.96 -57.17 -0.97 -20.80 16 16 O -0.98 -21.68 16.70 -57.17 -0.95 -22.64 16 17 N -1.10 -16.62 5.73 -4.98 -0.03 -16.65 16 18 C 0.11 1.44 6.17 -68.04 -0.42 1.02 16 19 H 0.13 1.67 6.78 -51.93 -0.35 1.32 16 20 C -0.18 -1.97 9.93 -26.85 -0.27 -2.24 16 21 C -0.13 -1.64 2.03 -154.54 -0.31 -1.95 16 22 C -0.11 -1.30 5.92 -26.44 -0.16 -1.46 16 23 C 0.06 0.85 6.84 37.32 0.26 1.10 16 24 O -0.38 -6.50 10.69 -35.23 -0.38 -6.88 16 25 C 0.05 0.75 6.85 37.33 0.26 1.01 16 26 C -0.11 -1.47 5.73 -26.43 -0.15 -1.62 16 27 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 28 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.03 0.71 7.68 -51.93 -0.40 0.31 16 30 H 0.26 6.75 8.31 -40.82 -0.34 6.41 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.05 0.66 6.47 -51.93 -0.34 0.32 16 33 H 0.08 1.36 7.00 -51.93 -0.36 1.00 16 34 H 0.41 5.68 7.29 -34.47 -0.25 5.43 16 35 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.06 0.94 7.48 -51.93 -0.39 0.55 16 41 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.09 1.76 5.84 -51.93 -0.30 1.46 16 43 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.91 6.31 -51.93 -0.33 0.58 16 LS Contribution 352.98 15.07 5.32 5.32 Total: -1.00 -29.87 352.98 -9.47 -39.34 By element: Atomic # 1 Polarization: 14.38 SS G_CDS: -6.64 Total: 7.74 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -0.41 Total: -9.80 kcal Atomic # 7 Polarization: -59.28 SS G_CDS: 0.24 Total: -59.04 kcal Atomic # 8 Polarization: -48.02 SS G_CDS: -2.30 Total: -50.32 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 52.32 SS G_CDS: -0.65 Total: 51.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.87 -9.47 -39.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434573238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.741 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds