Wall clock time and date at job start Tue Mar 31 2020 12:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47040 * 2 1 4 4 C 1.50700 * 109.47180 * 120.00471 * 2 1 3 5 5 H 1.08001 * 120.00017 * 119.99719 * 4 2 1 6 6 C 1.37881 * 119.99556 * 299.99437 * 4 2 1 7 7 N 1.31510 * 120.00032 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99730 * 180.02562 * 6 4 2 9 9 H 1.48505 * 109.47255 * 89.99971 * 8 6 4 10 10 H 1.48495 * 109.47192 * 210.00445 * 8 6 4 11 11 H 1.48507 * 109.47071 * 330.00206 * 8 6 4 12 12 N 1.46506 * 109.46656 * 240.00112 * 2 1 3 13 13 C 1.46498 * 120.00239 * 299.72110 * 12 2 1 14 14 S 1.65597 * 119.99791 * 120.00335 * 12 2 1 15 15 O 1.42101 * 106.40154 * 203.53789 * 14 12 2 16 16 O 1.42106 * 106.40098 * 336.45446 * 14 12 2 17 17 N 1.65596 * 107.22389 * 89.99756 * 14 12 2 18 18 C 1.46498 * 119.99862 * 64.99463 * 17 14 12 19 19 H 1.09002 * 115.55637 * 0.68866 * 18 17 14 20 20 C 1.53062 * 117.50529 * 146.39604 * 18 17 14 21 21 C 1.52698 * 59.93518 * 107.47064 * 20 18 17 22 22 C 1.53242 * 117.88659 * 107.77376 * 21 20 18 23 23 C 1.53322 * 108.49212 * 196.25136 * 22 21 20 24 24 O 1.42870 * 109.32498 * 306.03983 * 23 22 21 25 25 C 1.42868 * 114.52976 * 64.35788 * 24 23 22 26 26 C 1.53255 * 117.87685 * 252.23143 * 21 20 18 27 27 H 1.09002 * 109.46792 * 299.99932 * 1 2 3 28 28 H 1.09002 * 109.47539 * 59.99857 * 1 2 3 29 29 H 1.09005 * 109.47120 * 180.02562 * 1 2 3 30 30 H 0.97006 * 119.99631 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46661 * 89.99886 * 13 12 2 32 32 H 1.08993 * 109.47575 * 210.00600 * 13 12 2 33 33 H 1.09001 * 109.46870 * 330.00556 * 13 12 2 34 34 H 0.97000 * 119.99918 * 245.00321 * 17 14 12 35 35 H 1.09003 * 117.50489 * 214.93618 * 20 18 17 36 36 H 1.08995 * 117.50794 * 359.97438 * 20 18 17 37 37 H 1.09002 * 109.63327 * 315.95316 * 22 21 20 38 38 H 1.08997 * 109.63521 * 76.54935 * 22 21 20 39 39 H 1.09003 * 109.49811 * 186.08579 * 23 22 21 40 40 H 1.08997 * 109.52299 * 66.00648 * 23 22 21 41 41 H 1.09000 * 109.49762 * 175.69234 * 25 24 23 42 42 H 1.08995 * 109.52129 * 55.61002 * 25 24 23 43 43 H 1.08999 * 109.63354 * 283.44539 * 26 21 20 44 44 H 1.09001 * 109.63535 * 44.04445 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8296 2.6034 8 14 2.3225 -1.1196 4.0079 9 1 3.6306 -0.5442 4.4118 10 1 1.3445 -0.9492 5.1122 11 1 2.4880 -2.5655 3.7120 12 7 2.0182 -0.6906 -1.1963 13 6 1.6693 -2.0949 -1.4251 14 16 2.9703 0.1142 -2.2863 15 8 2.8226 -0.5645 -3.5260 16 8 2.6902 1.4973 -2.1193 17 7 4.5436 -0.1042 -1.8182 18 6 5.1356 -1.4441 -1.8417 19 1 4.4797 -2.2419 -2.1905 20 6 6.6241 -1.5534 -2.1813 21 6 6.1467 -1.7879 -0.7499 22 6 6.1618 -3.2241 -0.2155 23 6 5.2857 -3.2845 1.0413 24 8 5.7231 -2.2915 1.9707 25 6 5.5662 -0.9455 1.5181 26 6 6.4630 -0.7134 0.2961 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 0.7083 1.1608 3.4844 31 1 0.7413 -2.1506 -1.9941 32 1 2.4683 -2.5814 -1.9844 33 1 1.5385 -2.5976 -0.4667 34 1 5.0732 0.6550 -1.5284 35 1 6.9474 -2.4234 -2.7529 36 1 7.1626 -0.6286 -2.3875 37 1 5.7641 -3.9006 -0.9721 38 1 7.1829 -3.5107 0.0357 39 1 5.3704 -4.2713 1.4967 40 1 4.2468 -3.0968 0.7705 41 1 5.8517 -0.2582 2.3145 42 1 4.5257 -0.7724 1.2437 43 1 7.5098 -0.7862 0.5909 44 1 6.2648 0.2738 -0.1214 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434573238.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:54:57 Heat of formation + Delta-G solvation = -120.461853 kcal Electronic energy + Delta-G solvation = -27871.905832 eV Core-core repulsion = 24143.947440 eV Total energy + Delta-G solvation = -3727.958392 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.81086 -38.38641 -37.97058 -37.86284 -36.91295 -34.48687 -33.78801 -32.03620 -30.90402 -30.42849 -27.24617 -27.00421 -24.63415 -23.92121 -23.01780 -22.59032 -20.44790 -19.94088 -18.81089 -18.34409 -18.24842 -17.49327 -16.92966 -16.87642 -16.56753 -16.08073 -15.73630 -15.30947 -15.09954 -14.83001 -14.53278 -14.32029 -13.99773 -13.72609 -13.56397 -13.40124 -13.24218 -13.19975 -13.10999 -12.96375 -12.91427 -12.74994 -12.71627 -12.64832 -12.19208 -12.15104 -12.08990 -11.95378 -11.59611 -11.47898 -11.31772 -10.93968 -10.46308 -10.12295 -9.78786 -9.62321 -8.07335 -6.18426 -0.31162 1.42999 1.48699 1.54718 1.96378 2.45677 2.60014 2.85753 3.06831 3.22908 3.39953 3.68773 3.76861 3.90840 3.94233 4.01970 4.19367 4.25150 4.43976 4.61005 4.69422 4.73076 4.78629 4.80943 4.81886 4.91174 4.96083 4.99072 5.01803 5.11564 5.18430 5.20263 5.28240 5.31723 5.34278 5.37646 5.64846 5.70782 5.87244 6.04692 6.16295 6.32518 6.40528 6.90597 7.50295 8.97349 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.010597 B = 0.009013 C = 0.005711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.673960 B = 3105.759838 C = 4901.406088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.275 3.725 3 H 0.025 0.975 4 C -0.509 4.509 5 H 0.074 0.926 6 C 0.029 3.971 7 N -0.916 5.916 8 Si 0.936 3.064 9 H -0.280 1.280 10 H -0.295 1.295 11 H -0.265 1.265 12 N -0.993 5.993 13 C 0.099 3.901 14 S 2.799 3.201 15 O -1.005 7.005 16 O -1.019 7.019 17 N -1.089 6.089 18 C 0.080 3.920 19 H 0.137 0.863 20 C -0.152 4.152 21 C -0.136 4.136 22 C -0.105 4.105 23 C 0.051 3.949 24 O -0.404 6.404 25 C 0.045 3.955 26 C -0.105 4.105 27 H 0.069 0.931 28 H 0.016 0.984 29 H 0.044 0.956 30 H 0.261 0.739 31 H 0.050 0.950 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.418 0.582 35 H 0.126 0.874 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.103 0.897 40 H 0.043 0.957 41 H 0.077 0.923 42 H 0.063 0.937 43 H 0.081 0.919 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.303 -8.694 -6.791 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.171 3.829 3 H 0.042 0.958 4 C -0.548 4.548 5 H 0.092 0.908 6 C -0.171 4.171 7 N -0.556 5.556 8 Si 0.763 3.237 9 H -0.206 1.206 10 H -0.221 1.221 11 H -0.190 1.190 12 N -0.835 5.835 13 C -0.046 4.046 14 S 2.808 3.192 15 O -0.988 6.988 16 O -1.003 7.003 17 N -0.847 5.847 18 C -0.028 4.028 19 H 0.154 0.846 20 C -0.192 4.192 21 C -0.139 4.139 22 C -0.142 4.142 23 C -0.025 4.025 24 O -0.323 6.323 25 C -0.032 4.032 26 C -0.143 4.143 27 H 0.087 0.913 28 H 0.035 0.965 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.254 0.746 35 H 0.144 0.856 36 H 0.123 0.877 37 H 0.114 0.886 38 H 0.104 0.896 39 H 0.121 0.879 40 H 0.061 0.939 41 H 0.096 0.904 42 H 0.081 0.919 43 H 0.099 0.901 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 10.848 -8.272 -7.333 15.488 hybrid contribution 0.103 0.362 1.431 1.480 sum 10.951 -7.910 -5.902 14.742 Atomic orbital electron populations 1.21946 0.98113 1.00032 0.99803 1.18377 0.91735 0.91391 0.81394 0.95750 1.21518 1.30636 1.12712 0.89936 0.90802 1.25428 0.95281 0.95389 1.01040 1.69999 1.37605 1.24016 1.23951 0.85898 0.77685 0.79876 0.80224 1.20614 1.22107 1.18966 1.57568 1.65081 1.22272 1.38560 1.21421 1.00445 0.80496 1.02275 1.01141 0.72952 0.71989 0.73094 1.93534 1.86462 1.76262 1.42545 1.93548 1.84491 1.34915 1.87338 1.55376 1.30775 1.14757 1.83809 1.21672 0.92676 0.84245 1.04233 0.84551 1.23601 0.94740 1.04807 0.96012 1.21933 1.04359 0.96869 0.90719 1.21759 1.01573 0.93429 0.97467 1.22780 0.97267 0.91996 0.90467 1.87769 1.85276 1.15506 1.43747 1.22808 1.00651 0.83088 0.96635 1.21619 1.00292 0.97830 0.94551 0.91279 0.96471 0.93728 0.92984 0.93091 0.90689 0.90393 0.74641 0.85615 0.87669 0.88567 0.89605 0.87862 0.93893 0.90449 0.91865 0.90055 0.90887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.48 8.97 71.98 0.65 -5.84 16 2 C 0.28 12.84 2.62 44.24 0.12 12.96 16 3 H 0.02 1.32 6.91 -2.39 -0.02 1.30 16 4 C -0.51 -24.23 6.68 25.60 0.17 -24.06 16 5 H 0.07 3.35 5.86 -2.91 -0.02 3.34 16 6 C 0.03 1.45 5.30 84.66 0.45 1.90 16 7 N -0.92 -49.88 11.32 21.45 0.24 -49.63 16 8 Si 0.94 41.77 29.54 68.60 2.03 43.79 16 9 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 10 H -0.29 -13.32 7.11 99.48 0.71 -12.62 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 N -0.99 -38.09 3.12 -520.46 -1.62 -39.72 16 13 C 0.10 3.13 9.30 127.77 1.19 4.32 16 14 S 2.80 103.51 6.07 -56.49 -0.34 103.16 16 15 O -1.00 -38.38 16.96 -128.00 -2.17 -40.55 16 16 O -1.02 -45.76 16.70 -128.00 -2.14 -47.90 16 17 N -1.09 -31.44 5.73 -169.68 -0.97 -32.41 16 18 C 0.08 1.88 6.17 44.92 0.28 2.16 16 19 H 0.14 3.02 6.78 -2.39 -0.02 3.01 16 20 C -0.15 -2.67 9.93 30.51 0.30 -2.37 16 21 C -0.14 -2.94 2.03 -52.21 -0.11 -3.05 16 22 C -0.10 -2.02 5.92 30.78 0.18 -1.84 16 23 C 0.05 1.33 6.84 72.09 0.49 1.82 16 24 O -0.40 -13.17 10.69 -148.98 -1.59 -14.76 16 25 C 0.04 1.45 6.85 72.09 0.49 1.94 16 26 C -0.11 -2.61 5.73 30.79 0.18 -2.43 16 27 H 0.07 3.57 6.07 -2.39 -0.01 3.55 16 28 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.04 1.91 7.68 -2.38 -0.02 1.89 16 30 H 0.26 13.76 8.31 -92.70 -0.77 12.99 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.07 1.92 6.47 -2.39 -0.02 1.91 16 33 H 0.08 2.50 7.00 -2.39 -0.02 2.49 16 34 H 0.42 11.09 7.29 -96.75 -0.70 10.39 16 35 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.10 1.42 8.08 -2.39 -0.02 1.40 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.10 2.26 8.14 -2.39 -0.02 2.24 16 40 H 0.04 1.25 7.48 -2.39 -0.02 1.23 16 41 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.06 2.41 5.84 -2.39 -0.01 2.40 16 43 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 1.75 6.31 -2.39 -0.02 1.74 16 Total: -1.00 -64.64 352.98 -1.87 -66.52 By element: Atomic # 1 Polarization: 25.67 SS G_CDS: 0.31 Total: 25.98 kcal Atomic # 6 Polarization: -18.88 SS G_CDS: 4.39 Total: -14.49 kcal Atomic # 7 Polarization: -119.40 SS G_CDS: -2.35 Total: -121.76 kcal Atomic # 8 Polarization: -97.31 SS G_CDS: -5.90 Total: -103.21 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.79 kcal Atomic # 16 Polarization: 103.51 SS G_CDS: -0.34 Total: 103.16 kcal Total: -64.64 -1.87 -66.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434573238.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.945 kcal (2) G-P(sol) polarization free energy of solvation -64.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds