Wall clock time and date at job start Tue Mar 31 2020 12:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47703 * 2 1 4 4 C 1.50695 * 109.46851 * 120.00434 * 2 1 3 5 5 H 1.08005 * 120.00387 * 119.99889 * 4 2 1 6 6 C 1.37883 * 119.99934 * 299.99460 * 4 2 1 7 7 N 1.31509 * 119.99771 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99937 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47292 * 89.99694 * 8 6 4 10 10 H 1.48499 * 109.46873 * 209.99862 * 8 6 4 11 11 H 1.48498 * 109.47241 * 329.99742 * 8 6 4 12 12 N 1.46506 * 109.46822 * 239.99926 * 2 1 3 13 13 C 1.46507 * 119.99943 * 300.00202 * 12 2 1 14 14 S 1.65598 * 119.99968 * 120.00215 * 12 2 1 15 15 O 1.42100 * 106.40016 * 156.45623 * 14 12 2 16 16 O 1.42105 * 106.39982 * 23.54060 * 14 12 2 17 17 N 1.65597 * 107.21840 * 269.99881 * 14 12 2 18 18 C 1.46498 * 119.99870 * 65.00056 * 17 14 12 19 19 H 1.08998 * 115.55757 * 359.30128 * 18 17 14 20 20 C 1.53055 * 117.50769 * 213.54913 * 18 17 14 21 21 C 1.52699 * 117.50406 * 144.99870 * 18 17 14 22 22 C 1.53321 * 117.84652 * 359.67968 * 21 18 17 23 23 C 1.53323 * 108.44978 * 163.82912 * 22 21 18 24 24 O 1.42879 * 109.34423 * 53.97731 * 23 22 21 25 25 C 1.42880 * 114.48919 * 295.58578 * 24 23 22 26 26 C 1.53250 * 117.87046 * 215.28702 * 21 18 17 27 27 H 1.09006 * 109.47044 * 59.99519 * 1 2 3 28 28 H 1.08996 * 109.47703 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46996 * 300.00249 * 1 2 3 30 30 H 0.97000 * 119.99895 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46866 * 270.00043 * 13 12 2 32 32 H 1.09001 * 109.46760 * 30.00165 * 13 12 2 33 33 H 1.08997 * 109.46553 * 150.00047 * 13 12 2 34 34 H 0.96994 * 119.99740 * 244.99843 * 17 14 12 35 35 H 1.08995 * 117.51273 * 145.05951 * 20 18 17 36 36 H 1.09012 * 117.50417 * 359.97438 * 20 18 17 37 37 H 1.09000 * 109.67287 * 44.12484 * 22 21 18 38 38 H 1.08997 * 109.62770 * 283.50260 * 22 21 18 39 39 H 1.09002 * 109.49773 * 294.00666 * 23 22 21 40 40 H 1.09000 * 109.49258 * 173.94296 * 23 22 21 41 41 H 1.09007 * 109.49444 * 184.35631 * 25 24 23 42 42 H 1.08999 * 109.49671 * 304.41496 * 25 24 23 43 43 H 1.08992 * 109.64023 * 76.48240 * 26 21 18 44 44 H 1.09005 * 109.63182 * 315.88028 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3223 -1.1197 4.0079 9 1 3.6304 -0.5444 4.4118 10 1 1.3443 -0.9491 5.1122 11 1 2.4877 -2.5655 3.7121 12 7 2.0183 -0.6907 -1.1962 13 6 1.6642 -2.0933 -1.4281 14 16 2.9703 0.1141 -2.2863 15 8 3.7117 -0.8791 -2.9815 16 8 3.5794 1.1828 -1.5748 17 7 1.9606 0.8089 -3.3998 18 6 1.0292 1.8618 -2.9875 19 1 1.0531 2.1230 -1.9296 20 6 -0.3225 1.9295 -3.7024 21 6 0.7464 2.9833 -3.9845 22 6 1.4607 2.9333 -5.3402 23 6 0.7431 3.8875 -6.3022 24 8 0.6646 5.1856 -5.7103 25 6 -0.1293 5.2485 -4.5240 26 6 0.5240 4.3949 -3.4308 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7088 1.1612 3.4844 31 1 2.4155 -2.7378 -0.9717 32 1 0.6902 -2.3002 -0.9847 33 1 1.6236 -2.2852 -2.5002 34 1 1.9860 0.5189 -4.3250 35 1 -1.1881 2.2351 -3.1147 36 1 -0.5184 1.1909 -4.4798 37 1 1.4252 1.9185 -5.7365 38 1 2.4977 3.2464 -5.2194 39 1 -0.2625 3.5164 -6.5001 40 1 1.2995 3.9473 -7.2376 41 1 -0.1971 6.2827 -4.1861 42 1 -1.1288 4.8683 -4.7345 43 1 1.4813 4.8323 -3.1476 44 1 -0.1321 4.3481 -2.5615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001434573240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:02 Heat of formation + Delta-G solvation = -99.860082 kcal Electronic energy + Delta-G solvation = -26532.686104 eV Core-core repulsion = 22805.621072 eV Total energy + Delta-G solvation = -3727.065032 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.96313 -37.28038 -36.65147 -36.17679 -35.24237 -32.72934 -32.59531 -31.33984 -29.50989 -29.11341 -25.61599 -25.16784 -23.87405 -23.42025 -21.91734 -20.78540 -19.00389 -18.90634 -17.41989 -16.96745 -16.49242 -16.27511 -16.11686 -15.58243 -15.11656 -14.96408 -14.54539 -14.10733 -13.87996 -13.56974 -13.24947 -13.13281 -12.81353 -12.49171 -12.23590 -12.07601 -11.96781 -11.75182 -11.68669 -11.47466 -11.41642 -11.38421 -11.23582 -10.98339 -10.83524 -10.79650 -10.71545 -10.48147 -10.29515 -10.12446 -9.99623 -9.65793 -9.28824 -8.71008 -8.46920 -8.00212 -6.09900 -4.15910 1.15311 3.28099 3.34625 3.36965 3.42226 3.71357 3.73996 4.09753 4.38596 4.51755 4.57580 4.75334 4.83353 4.89874 5.01611 5.06880 5.21478 5.27307 5.29792 5.41940 5.46945 5.53896 5.56314 5.61935 5.75963 5.83612 5.93449 6.12787 6.13399 6.17237 6.27304 6.39228 6.59596 6.73012 6.76829 6.96494 7.07110 7.09655 7.44993 7.60845 7.76222 8.01093 8.25144 8.86204 9.50041 10.95845 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.004191 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.932238 B = 6678.907979 C = 7496.714224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.267 3.733 3 H 0.058 0.942 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.064 3.936 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.989 5.989 13 C 0.112 3.888 14 S 2.780 3.220 15 O -0.996 6.996 16 O -0.970 6.970 17 N -1.103 6.103 18 C 0.113 3.887 19 H 0.141 0.859 20 C -0.178 4.178 21 C -0.140 4.140 22 C -0.115 4.115 23 C 0.066 3.934 24 O -0.385 6.385 25 C 0.066 3.934 26 C -0.119 4.119 27 H 0.013 0.987 28 H 0.033 0.967 29 H 0.093 0.907 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.407 0.593 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.050 0.950 43 H 0.080 0.920 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.564 4.018 -14.979 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.138 4.138 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.832 5.832 13 C -0.035 4.035 14 S 2.788 3.212 15 O -0.980 6.980 16 O -0.954 6.954 17 N -0.857 5.857 18 C 0.004 3.996 19 H 0.158 0.842 20 C -0.218 4.218 21 C -0.142 4.142 22 C -0.153 4.153 23 C -0.011 4.011 24 O -0.304 6.304 25 C -0.011 4.011 26 C -0.157 4.157 27 H 0.032 0.968 28 H 0.052 0.948 29 H 0.111 0.889 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.240 0.760 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.090 0.910 38 H 0.096 0.904 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.566 4.385 -14.702 16.007 hybrid contribution -0.313 -1.000 0.647 1.232 sum -4.879 3.384 -14.055 15.258 Atomic orbital electron populations 1.22147 0.98216 0.99872 1.00670 1.18746 0.91306 0.92903 0.80622 0.92460 1.21331 1.31547 1.13018 0.90033 0.91972 1.24892 0.94920 0.95016 0.98976 1.69843 1.36550 1.22757 1.23785 0.86502 0.78684 0.79984 0.82276 1.20546 1.21186 1.19892 1.57684 1.70012 1.19877 1.35606 1.21124 1.01667 0.81963 0.98736 1.01995 0.73505 0.73158 0.72503 1.93553 1.69488 1.60058 1.74906 1.93612 1.73687 1.55820 1.72241 1.55861 1.55979 1.50010 1.23802 1.21382 0.91097 0.89789 0.97351 0.84185 1.23564 0.93426 1.01085 1.03680 1.21913 1.03103 0.91926 0.97289 1.21724 1.00235 0.99969 0.93345 1.22563 0.99635 0.83365 0.95532 1.87861 1.71874 1.29495 1.41172 1.22585 0.93331 1.00381 0.84793 1.21819 1.02548 0.92917 0.98387 0.96783 0.94761 0.88901 0.92709 0.93306 0.90969 0.93377 0.76004 0.87876 0.88547 0.90978 0.90358 0.93217 0.89070 0.88856 0.93154 0.90181 0.90132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.21 8.95 37.16 0.33 -2.88 16 2 C 0.27 6.29 2.62 -69.08 -0.18 6.11 16 3 H 0.06 1.49 6.81 -51.93 -0.35 1.14 16 4 C -0.52 -13.76 8.37 -34.44 -0.29 -14.05 16 5 H 0.06 1.65 7.65 -52.48 -0.40 1.25 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -24.18 11.32 55.43 0.63 -23.55 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 12 N -0.99 -19.96 3.12 -115.85 -0.36 -20.32 16 13 C 0.11 1.96 9.53 59.85 0.57 2.53 16 14 S 2.78 53.48 6.07 -107.50 -0.65 52.82 16 15 O -1.00 -20.44 17.21 -57.17 -0.98 -21.43 16 16 O -0.97 -22.40 16.46 -57.17 -0.94 -23.34 16 17 N -1.10 -15.92 5.74 -5.00 -0.03 -15.95 16 18 C 0.11 1.57 6.01 -68.06 -0.41 1.16 16 19 H 0.14 2.25 7.94 -51.93 -0.41 1.84 16 20 C -0.18 -1.95 9.85 -26.84 -0.26 -2.22 16 21 C -0.14 -1.61 2.03 -154.51 -0.31 -1.93 16 22 C -0.11 -1.20 5.41 -26.40 -0.14 -1.34 16 23 C 0.07 0.62 6.84 37.32 0.26 0.88 16 24 O -0.39 -4.41 10.69 -35.23 -0.38 -4.79 16 25 C 0.07 0.64 6.84 37.32 0.26 0.90 16 26 C -0.12 -1.31 5.92 -26.44 -0.16 -1.47 16 27 H 0.01 0.25 7.88 -51.93 -0.41 -0.16 16 28 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 29 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 30 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.07 1.22 6.43 -51.93 -0.33 0.88 16 33 H 0.05 0.71 7.79 -51.93 -0.40 0.30 16 34 H 0.41 4.81 7.69 -34.46 -0.27 4.54 16 35 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.10 0.95 8.14 -51.92 -0.42 0.52 16 37 H 0.07 0.65 7.06 -51.93 -0.37 0.28 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 44 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 LS Contribution 360.78 15.07 5.44 5.44 Total: -1.00 -31.89 360.78 -9.70 -41.59 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -6.97 Total: 4.32 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -0.44 Total: -10.69 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.24 Total: -59.82 kcal Atomic # 8 Polarization: -47.26 SS G_CDS: -2.30 Total: -49.56 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Atomic # 16 Polarization: 53.48 SS G_CDS: -0.65 Total: 52.82 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -31.89 -9.70 -41.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434573240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.269 kcal (2) G-P(sol) polarization free energy of solvation -31.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds