Wall clock time and date at job start Tue Mar 31 2020 12:55:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47703 * 2 1 4 4 C 1.50695 * 109.46851 * 120.00434 * 2 1 3 5 5 H 1.08005 * 120.00387 * 119.99889 * 4 2 1 6 6 C 1.37883 * 119.99934 * 299.99460 * 4 2 1 7 7 N 1.31509 * 119.99771 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99937 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47292 * 89.99694 * 8 6 4 10 10 H 1.48499 * 109.46873 * 209.99862 * 8 6 4 11 11 H 1.48498 * 109.47241 * 329.99742 * 8 6 4 12 12 N 1.46506 * 109.46822 * 239.99926 * 2 1 3 13 13 C 1.46507 * 119.99943 * 300.00202 * 12 2 1 14 14 S 1.65598 * 119.99968 * 120.00215 * 12 2 1 15 15 O 1.42100 * 106.40016 * 156.45623 * 14 12 2 16 16 O 1.42105 * 106.39982 * 23.54060 * 14 12 2 17 17 N 1.65597 * 107.21840 * 269.99881 * 14 12 2 18 18 C 1.46498 * 119.99870 * 65.00056 * 17 14 12 19 19 H 1.08998 * 115.55757 * 359.30128 * 18 17 14 20 20 C 1.53055 * 117.50769 * 213.54913 * 18 17 14 21 21 C 1.52699 * 117.50406 * 144.99870 * 18 17 14 22 22 C 1.53321 * 117.84652 * 359.67968 * 21 18 17 23 23 C 1.53323 * 108.44978 * 163.82912 * 22 21 18 24 24 O 1.42879 * 109.34423 * 53.97731 * 23 22 21 25 25 C 1.42880 * 114.48919 * 295.58578 * 24 23 22 26 26 C 1.53250 * 117.87046 * 215.28702 * 21 18 17 27 27 H 1.09006 * 109.47044 * 59.99519 * 1 2 3 28 28 H 1.08996 * 109.47703 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46996 * 300.00249 * 1 2 3 30 30 H 0.97000 * 119.99895 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46866 * 270.00043 * 13 12 2 32 32 H 1.09001 * 109.46760 * 30.00165 * 13 12 2 33 33 H 1.08997 * 109.46553 * 150.00047 * 13 12 2 34 34 H 0.96994 * 119.99740 * 244.99843 * 17 14 12 35 35 H 1.08995 * 117.51273 * 145.05951 * 20 18 17 36 36 H 1.09012 * 117.50417 * 359.97438 * 20 18 17 37 37 H 1.09000 * 109.67287 * 44.12484 * 22 21 18 38 38 H 1.08997 * 109.62770 * 283.50260 * 22 21 18 39 39 H 1.09002 * 109.49773 * 294.00666 * 23 22 21 40 40 H 1.09000 * 109.49258 * 173.94296 * 23 22 21 41 41 H 1.09007 * 109.49444 * 184.35631 * 25 24 23 42 42 H 1.08999 * 109.49671 * 304.41496 * 25 24 23 43 43 H 1.08992 * 109.64023 * 76.48240 * 26 21 18 44 44 H 1.09005 * 109.63182 * 315.88028 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 1.2304 5 1 2.6531 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3223 -1.1197 4.0079 9 1 3.6304 -0.5444 4.4118 10 1 1.3443 -0.9491 5.1122 11 1 2.4877 -2.5655 3.7121 12 7 2.0183 -0.6907 -1.1962 13 6 1.6642 -2.0933 -1.4281 14 16 2.9703 0.1141 -2.2863 15 8 3.7117 -0.8791 -2.9815 16 8 3.5794 1.1828 -1.5748 17 7 1.9606 0.8089 -3.3998 18 6 1.0292 1.8618 -2.9875 19 1 1.0531 2.1230 -1.9296 20 6 -0.3225 1.9295 -3.7024 21 6 0.7464 2.9833 -3.9845 22 6 1.4607 2.9333 -5.3402 23 6 0.7431 3.8875 -6.3022 24 8 0.6646 5.1856 -5.7103 25 6 -0.1293 5.2485 -4.5240 26 6 0.5240 4.3949 -3.4308 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.7088 1.1612 3.4844 31 1 2.4155 -2.7378 -0.9717 32 1 0.6902 -2.3002 -0.9847 33 1 1.6236 -2.2852 -2.5002 34 1 1.9860 0.5189 -4.3250 35 1 -1.1881 2.2351 -3.1147 36 1 -0.5184 1.1909 -4.4798 37 1 1.4252 1.9185 -5.7365 38 1 2.4977 3.2464 -5.2194 39 1 -0.2625 3.5164 -6.5001 40 1 1.2995 3.9473 -7.2376 41 1 -0.1971 6.2827 -4.1861 42 1 -1.1288 4.8683 -4.7345 43 1 1.4813 4.8323 -3.1476 44 1 -0.1321 4.3481 -2.5615 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434573240.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:55:01 Heat of formation + Delta-G solvation = -123.083174 kcal Electronic energy + Delta-G solvation = -26533.693133 eV Core-core repulsion = 22805.621072 eV Total energy + Delta-G solvation = -3728.072061 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.84545 -38.43689 -38.07781 -37.86518 -36.91532 -34.52464 -33.84839 -32.12114 -30.90676 -30.41762 -27.27221 -27.00746 -24.67539 -24.21386 -23.00220 -22.54286 -20.40657 -19.85564 -18.96744 -18.52514 -18.11347 -17.64709 -16.93499 -16.87383 -16.56243 -16.12482 -15.77861 -15.33708 -15.08877 -14.81466 -14.74618 -14.59315 -14.01655 -13.75400 -13.42281 -13.37402 -13.26382 -13.17720 -13.13411 -13.08018 -12.98407 -12.83476 -12.79468 -12.58994 -12.26796 -12.21021 -12.12747 -11.88288 -11.60292 -11.51252 -11.14290 -10.98770 -10.58519 -10.49719 -9.74631 -9.65453 -8.11679 -6.24372 -0.37572 1.41640 1.44211 1.52599 1.98825 2.42943 2.58196 2.79725 3.01034 3.16900 3.36032 3.63866 3.73350 3.89226 3.93580 4.01634 4.11476 4.19230 4.32282 4.56185 4.59341 4.65729 4.69010 4.77629 4.80952 4.84102 4.91700 4.99867 5.02590 5.05584 5.13707 5.15443 5.18339 5.26773 5.29126 5.32102 5.62669 5.71553 5.89367 6.07854 6.18009 6.32459 6.33468 6.82643 7.44360 8.92212 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.004191 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.932238 B = 6678.907979 C = 7496.714224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.274 3.726 3 H 0.025 0.975 4 C -0.540 4.540 5 H 0.053 0.947 6 C 0.021 3.979 7 N -0.911 5.911 8 Si 0.951 3.049 9 H -0.284 1.284 10 H -0.278 1.278 11 H -0.268 1.268 12 N -0.995 5.995 13 C 0.105 3.895 14 S 2.797 3.203 15 O -1.010 7.010 16 O -1.016 7.016 17 N -1.082 6.082 18 C 0.076 3.924 19 H 0.112 0.888 20 C -0.150 4.150 21 C -0.133 4.133 22 C -0.117 4.117 23 C 0.065 3.935 24 O -0.406 6.406 25 C 0.068 3.932 26 C -0.123 4.123 27 H 0.042 0.958 28 H 0.040 0.960 29 H 0.066 0.934 30 H 0.264 0.736 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.423 0.577 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.067 0.933 43 H 0.060 0.940 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.126 3.398 -16.676 18.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.170 3.830 3 H 0.043 0.957 4 C -0.580 4.580 5 H 0.072 0.928 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.777 3.223 9 H -0.210 1.210 10 H -0.203 1.203 11 H -0.193 1.193 12 N -0.837 5.837 13 C -0.041 4.041 14 S 2.807 3.193 15 O -0.994 6.994 16 O -0.999 6.999 17 N -0.841 5.841 18 C -0.032 4.032 19 H 0.130 0.870 20 C -0.189 4.189 21 C -0.136 4.136 22 C -0.155 4.155 23 C -0.012 4.012 24 O -0.325 6.325 25 C -0.009 4.009 26 C -0.161 4.161 27 H 0.061 0.939 28 H 0.059 0.941 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.058 0.942 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.259 0.741 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.108 0.892 38 H 0.079 0.921 39 H 0.084 0.916 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.085 0.915 43 H 0.079 0.921 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.129 3.743 -16.418 17.920 hybrid contribution 0.193 -0.768 1.113 1.366 sum -5.936 2.975 -15.305 16.684 Atomic orbital electron populations 1.21916 0.96479 1.00257 1.00760 1.18416 0.92463 0.91174 0.80988 0.95726 1.21663 1.31661 1.13032 0.91654 0.92841 1.25573 0.95204 0.95720 1.01443 1.69952 1.37147 1.23572 1.24305 0.85662 0.77968 0.79200 0.79436 1.20995 1.20301 1.19261 1.57554 1.69967 1.21044 1.35129 1.21323 1.01651 0.80227 1.00860 1.01190 0.73420 0.72367 0.72371 1.93522 1.70348 1.60533 1.74965 1.93554 1.75222 1.57379 1.73755 1.55222 1.55539 1.49772 1.23598 1.21408 0.93530 0.91412 0.96882 0.87000 1.23660 0.92039 1.00354 1.02889 1.22010 1.03039 0.91647 0.96904 1.21786 0.99279 1.01393 0.93040 1.22700 1.00629 0.82316 0.95507 1.87841 1.72334 1.30704 1.41623 1.22654 0.93584 1.00821 0.83794 1.21866 1.01900 0.93079 0.99297 0.93886 0.94057 0.91532 0.92640 0.94244 0.90246 0.90189 0.74075 0.86866 0.86398 0.89196 0.92065 0.91551 0.87644 0.87830 0.91505 0.92146 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.73 8.95 71.98 0.64 -5.09 16 2 C 0.27 13.10 2.62 44.24 0.12 13.22 16 3 H 0.02 1.35 6.81 -2.39 -0.02 1.33 16 4 C -0.54 -29.08 8.37 25.60 0.21 -28.87 16 5 H 0.05 2.89 7.65 -2.91 -0.02 2.87 16 6 C 0.02 1.12 5.30 84.66 0.45 1.56 16 7 N -0.91 -50.21 11.32 21.45 0.24 -49.97 16 8 Si 0.95 43.11 29.54 68.60 2.03 45.14 16 9 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 N -0.99 -40.02 3.12 -520.44 -1.62 -41.65 16 13 C 0.10 3.55 9.53 127.77 1.22 4.76 16 14 S 2.80 107.90 6.07 -56.49 -0.34 107.56 16 15 O -1.01 -40.78 17.21 -128.00 -2.20 -42.98 16 16 O -1.02 -48.64 16.46 -128.00 -2.11 -50.74 16 17 N -1.08 -30.00 5.74 -169.73 -0.97 -30.97 16 18 C 0.08 2.05 6.01 44.91 0.27 2.32 16 19 H 0.11 3.70 7.94 -2.39 -0.02 3.68 16 20 C -0.15 -2.84 9.85 30.52 0.30 -2.54 16 21 C -0.13 -2.86 2.03 -52.18 -0.11 -2.97 16 22 C -0.12 -2.20 5.41 30.81 0.17 -2.03 16 23 C 0.06 1.05 6.84 72.09 0.49 1.54 16 24 O -0.41 -8.51 10.69 -148.98 -1.59 -10.11 16 25 C 0.07 1.20 6.84 72.09 0.49 1.69 16 26 C -0.12 -2.63 5.92 30.78 0.18 -2.45 16 27 H 0.04 1.53 7.88 -2.38 -0.02 1.51 16 28 H 0.04 1.66 6.66 -2.39 -0.02 1.64 16 29 H 0.07 3.22 6.07 -2.39 -0.01 3.20 16 30 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 31 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.08 2.55 6.43 -2.39 -0.02 2.54 16 33 H 0.08 2.17 7.79 -2.39 -0.02 2.15 16 34 H 0.42 9.01 7.69 -96.76 -0.74 8.27 16 35 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.12 1.77 8.14 -2.38 -0.02 1.75 16 37 H 0.09 1.33 7.06 -2.39 -0.02 1.32 16 38 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.10 1.57 8.14 -2.38 -0.02 1.55 16 42 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.08 1.69 8.08 -2.38 -0.02 1.67 16 Total: -1.00 -69.60 360.78 -1.88 -71.48 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.25 Total: 21.09 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: 4.44 Total: -18.85 kcal Atomic # 7 Polarization: -120.23 SS G_CDS: -2.36 Total: -122.59 kcal Atomic # 8 Polarization: -97.93 SS G_CDS: -5.90 Total: -103.83 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Atomic # 16 Polarization: 107.90 SS G_CDS: -0.34 Total: 107.56 kcal Total: -69.60 -1.88 -71.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434573240.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.601 kcal (2) G-P(sol) polarization free energy of solvation -69.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds