Wall clock time and date at job start Tue Mar 31 2020 13:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.46869 * 2 1 4 4 C 1.46508 * 119.99914 * 270.00331 * 3 2 1 5 5 C 1.34771 * 120.00289 * 90.00021 * 3 2 1 6 6 O 1.21285 * 120.00061 * 0.02562 * 5 3 2 7 7 C 1.50698 * 120.00526 * 179.97438 * 5 3 2 8 8 H 1.09004 * 109.46711 * 60.00364 * 7 5 3 9 9 C 1.52998 * 109.47413 * 300.00774 * 7 5 3 10 10 N 1.46492 * 109.47473 * 180.02562 * 7 5 3 11 11 S 1.65600 * 120.00209 * 215.00293 * 10 7 5 12 12 O 1.42103 * 104.27905 * 181.07244 * 11 10 7 13 13 O 1.42097 * 104.27815 * 308.92959 * 11 10 7 14 14 C 1.81392 * 104.45066 * 65.00252 * 11 10 7 15 15 C 1.53000 * 109.47636 * 173.67939 * 14 11 10 16 16 C 1.50705 * 115.54686 * 65.18951 * 15 14 11 17 17 H 1.08001 * 119.99969 * 264.78538 * 16 15 14 18 18 C 1.37867 * 120.00079 * 84.78804 * 16 15 14 19 19 N 1.31517 * 120.00036 * 352.23353 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 172.23251 * 18 16 15 21 21 H 1.48495 * 109.47136 * 59.99553 * 20 18 16 22 22 H 1.48494 * 109.47719 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46853 * 300.00080 * 20 18 16 24 24 C 1.52996 * 117.49638 * 279.52227 * 15 14 11 25 25 C 1.52994 * 117.50016 * 210.86132 * 15 14 11 26 26 H 1.08992 * 109.47489 * 60.00411 * 1 2 3 27 27 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46759 * 299.99413 * 1 2 3 29 29 H 1.09002 * 109.46527 * 240.00098 * 2 1 3 30 30 H 1.08998 * 109.47117 * 119.99821 * 2 1 3 31 31 H 1.09004 * 109.46936 * 270.00054 * 4 3 2 32 32 H 1.09001 * 109.47182 * 30.00175 * 4 3 2 33 33 H 1.08999 * 109.47094 * 149.99864 * 4 3 2 34 34 H 1.09000 * 109.47590 * 179.97438 * 9 7 5 35 35 H 1.09000 * 109.46976 * 299.99975 * 9 7 5 36 36 H 1.09005 * 109.47366 * 59.99230 * 9 7 5 37 37 H 0.97002 * 119.99781 * 35.00670 * 10 7 5 38 38 H 1.09004 * 109.47288 * 293.67932 * 14 11 10 39 39 H 1.09002 * 109.47137 * 53.67516 * 14 11 10 40 40 H 0.97002 * 119.99808 * 185.02785 * 19 18 16 41 41 H 1.08996 * 117.50158 * 359.97438 * 24 15 14 42 42 H 1.09007 * 117.50011 * 145.01859 * 24 15 14 43 43 H 1.09006 * 117.49953 * 214.97621 * 25 15 14 44 44 H 1.08994 * 117.50095 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 2.2429 2.0166 1.1671 6 8 2.0413 1.4447 2.2175 7 6 2.7458 3.4372 1.1672 8 1 2.0280 4.0766 0.6532 9 6 4.0936 3.5012 0.4461 10 7 2.9090 3.8974 2.5483 11 16 2.5952 5.4762 2.9376 12 8 2.8812 5.5580 4.3272 13 8 3.3433 6.2260 1.9904 14 6 0.8162 5.6704 2.6414 15 6 0.3681 7.0541 3.1164 16 6 0.9490 8.2207 2.3597 17 1 1.8308 8.7208 2.7322 18 6 0.3548 8.6497 1.1920 19 7 -0.6231 7.9518 0.6568 20 14 0.9384 10.2222 0.3699 21 1 2.3743 10.0916 0.0147 22 1 0.1433 10.4619 -0.8612 23 1 0.7612 11.3638 1.3030 24 6 0.1146 7.2389 4.6139 25 6 -1.0636 7.1925 3.6378 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.2919 1.9006 -1.5835 32 1 1.5815 1.6877 -2.0284 33 1 2.0954 3.1411 -1.1385 34 1 4.4571 4.5289 0.4457 35 1 4.8113 2.8618 0.9600 36 1 3.9726 3.1586 -0.5816 37 1 3.2009 3.2774 3.2348 38 1 0.6121 5.5686 1.5755 39 1 0.2705 4.9033 3.1907 40 1 -0.9920 8.2129 -0.2015 41 1 0.2667 6.3748 5.2605 42 1 0.3676 8.2046 5.0518 43 1 -1.5853 8.1277 3.4339 44 1 -1.6864 6.2981 3.6420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475258876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:32 Heat of formation + Delta-G solvation = -78.159717 kcal Electronic energy + Delta-G solvation = -26411.509885 eV Core-core repulsion = 22685.385851 eV Total energy + Delta-G solvation = -3726.124034 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.28568 -36.75332 -36.33693 -36.12091 -35.42905 -35.01439 -32.05590 -31.70822 -29.29039 -28.17919 -27.08014 -25.46595 -24.75182 -22.57665 -21.20101 -19.83977 -19.53611 -18.76459 -17.56593 -16.85624 -16.37448 -16.30003 -15.82364 -15.12193 -15.05056 -14.73609 -14.39383 -14.07660 -14.04363 -13.78743 -13.50891 -13.10221 -13.04219 -12.70054 -12.33606 -12.19594 -12.06750 -11.95377 -11.84878 -11.56971 -11.34296 -11.25314 -11.21680 -11.10457 -11.00965 -10.91986 -10.60992 -10.46151 -10.16250 -9.92146 -9.69996 -9.27602 -8.96448 -8.89093 -8.57335 -8.09310 -6.15340 -4.25893 1.05567 2.49246 2.74954 3.31301 3.32983 3.39847 3.44174 4.26759 4.35815 4.55757 4.77063 4.86914 4.89967 4.95424 4.99637 5.08407 5.13754 5.19657 5.21011 5.26209 5.35868 5.44550 5.50849 5.70236 5.72467 5.77531 5.96113 6.00780 6.06252 6.25108 6.27334 6.34037 6.38402 6.61388 6.74084 6.98735 7.09751 7.22305 7.33172 7.39913 7.78883 8.01388 8.19921 8.79612 9.45082 10.92287 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.004645 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.409385 B = 6026.559401 C = 6384.060882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.617 5.617 4 C 0.069 3.931 5 C 0.513 3.487 6 O -0.529 6.529 7 C 0.138 3.862 8 H 0.111 0.889 9 C -0.179 4.179 10 N -1.114 6.114 11 S 2.608 3.392 12 O -0.969 6.969 13 O -0.947 6.947 14 C -0.556 4.556 15 C 0.043 3.957 16 C -0.515 4.515 17 H 0.068 0.932 18 C 0.083 3.917 19 N -0.876 5.876 20 Si 0.891 3.109 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.274 1.274 24 C -0.208 4.208 25 C -0.141 4.141 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.064 0.936 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.417 0.583 38 H 0.130 0.870 39 H 0.101 0.899 40 H 0.263 0.737 41 H 0.075 0.925 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.618 -14.552 -5.999 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.011 4.011 3 N -0.352 5.352 4 C -0.074 4.074 5 C 0.299 3.701 6 O -0.404 6.404 7 C 0.026 3.974 8 H 0.129 0.871 9 C -0.238 4.238 10 N -0.871 5.871 11 S 2.705 3.295 12 O -0.960 6.960 13 O -0.936 6.936 14 C -0.689 4.689 15 C 0.040 3.960 16 C -0.552 4.552 17 H 0.086 0.914 18 C -0.122 4.122 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.194 1.194 22 H -0.212 1.212 23 H -0.199 1.199 24 C -0.245 4.245 25 C -0.180 4.180 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.101 0.899 31 H 0.083 0.917 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.251 0.749 38 H 0.149 0.851 39 H 0.119 0.881 40 H 0.073 0.927 41 H 0.094 0.906 42 H 0.105 0.895 43 H 0.104 0.896 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.964 -14.102 -5.409 15.615 hybrid contribution -0.480 0.144 -0.641 0.814 sum 3.484 -13.958 -6.050 15.607 Atomic orbital electron populations 1.22146 0.95761 1.02188 1.02711 1.21430 0.94565 0.82049 1.03060 1.47854 1.66546 1.14450 1.06314 1.22103 1.01494 0.98509 0.85322 1.20906 0.77008 0.88709 0.83436 1.90675 1.51372 1.67414 1.30954 1.20527 0.99274 0.93077 0.84537 0.87123 1.22548 0.95493 1.05313 1.00441 1.55944 1.84946 1.31929 1.14258 1.05205 0.78765 0.71462 0.74099 1.93515 1.84825 1.84766 1.32851 1.93535 1.68380 1.68287 1.63438 1.29997 1.21782 1.06095 1.11009 1.18274 0.97577 0.89451 0.90669 1.20492 1.12954 1.13454 1.08286 0.91352 1.24945 0.93847 0.96823 0.96623 1.69979 1.25095 1.38991 1.17067 0.86655 0.79363 0.83585 0.78658 1.19437 1.21157 1.19890 1.23203 1.06055 1.01636 0.93634 1.22550 0.91328 1.01047 1.03085 0.92421 0.91647 0.91997 0.90546 0.89862 0.91717 0.90782 0.90068 0.89148 0.91818 0.90420 0.74855 0.85148 0.88093 0.92715 0.90620 0.89475 0.89568 0.91543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.24 37.16 0.38 -1.13 16 2 C 0.11 1.00 6.13 -4.04 -0.02 0.97 16 3 N -0.62 -6.43 2.87 -181.56 -0.52 -6.95 16 4 C 0.07 0.51 8.80 59.85 0.53 1.04 16 5 C 0.51 7.05 7.14 -10.99 -0.08 6.97 16 6 O -0.53 -8.82 15.57 5.55 0.09 -8.73 16 7 C 0.14 1.93 2.28 -69.09 -0.16 1.78 16 8 H 0.11 1.50 6.56 -51.93 -0.34 1.16 16 9 C -0.18 -2.12 9.15 37.16 0.34 -1.78 16 10 N -1.11 -18.21 5.15 -5.89 -0.03 -18.24 16 11 S 2.61 53.43 5.11 -107.50 -0.55 52.88 16 12 O -0.97 -21.98 18.08 -57.54 -1.04 -23.02 16 13 O -0.95 -21.71 16.78 -57.54 -0.97 -22.67 16 14 C -0.56 -11.82 5.76 37.16 0.21 -11.61 16 15 C 0.04 1.04 1.32 -155.66 -0.21 0.84 16 16 C -0.51 -13.91 8.19 -34.44 -0.28 -14.19 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.47 16 18 C 0.08 2.21 5.38 -17.82 -0.10 2.11 16 19 N -0.88 -23.56 12.98 55.43 0.72 -22.84 16 20 Si 0.89 20.91 29.55 -169.99 -5.02 15.89 16 21 H -0.27 -6.37 7.11 56.52 0.40 -5.96 16 22 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 C -0.21 -4.65 9.96 -26.70 -0.27 -4.92 16 25 C -0.14 -3.24 9.49 -26.70 -0.25 -3.50 16 26 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 30 H 0.08 0.85 7.42 -51.93 -0.39 0.47 16 31 H 0.06 0.38 6.95 -51.93 -0.36 0.02 16 32 H 0.07 0.42 8.07 -51.93 -0.42 0.00 16 33 H 0.08 0.64 6.01 -51.93 -0.31 0.33 16 34 H 0.09 1.23 7.42 -51.93 -0.39 0.85 16 35 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.68 4.53 -51.93 -0.24 0.44 16 37 H 0.42 6.47 8.17 -34.47 -0.28 6.19 16 38 H 0.13 2.79 7.64 -51.92 -0.40 2.39 16 39 H 0.10 1.91 8.09 -51.92 -0.42 1.49 16 40 H 0.26 6.74 8.32 -40.82 -0.34 6.41 16 41 H 0.08 1.57 8.14 -51.93 -0.42 1.14 16 42 H 0.09 1.91 8.14 -51.92 -0.42 1.49 16 43 H 0.09 2.08 8.14 -51.93 -0.42 1.65 16 44 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 LS Contribution 371.48 15.07 5.60 5.60 Total: -1.00 -33.83 371.48 -8.51 -42.34 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.88 Total: 9.16 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 0.10 Total: -23.42 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.17 Total: -48.03 kcal Atomic # 8 Polarization: -52.50 SS G_CDS: -1.92 Total: -54.42 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 53.43 SS G_CDS: -0.55 Total: 52.88 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.83 -8.51 -42.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475258876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.815 kcal (2) G-P(sol) polarization free energy of solvation -33.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds