Wall clock time and date at job start Tue Mar 31 2020 13:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46496 * 109.46869 * 2 1 4 4 C 1.46508 * 119.99914 * 270.00331 * 3 2 1 5 5 C 1.34771 * 120.00289 * 90.00021 * 3 2 1 6 6 O 1.21285 * 120.00061 * 0.02562 * 5 3 2 7 7 C 1.50698 * 120.00526 * 179.97438 * 5 3 2 8 8 H 1.09004 * 109.46711 * 60.00364 * 7 5 3 9 9 C 1.52998 * 109.47413 * 300.00774 * 7 5 3 10 10 N 1.46492 * 109.47473 * 180.02562 * 7 5 3 11 11 S 1.65600 * 120.00209 * 215.00293 * 10 7 5 12 12 O 1.42103 * 104.27905 * 181.07244 * 11 10 7 13 13 O 1.42097 * 104.27815 * 308.92959 * 11 10 7 14 14 C 1.81392 * 104.45066 * 65.00252 * 11 10 7 15 15 C 1.53000 * 109.47636 * 173.67939 * 14 11 10 16 16 C 1.50705 * 115.54686 * 65.18951 * 15 14 11 17 17 H 1.08001 * 119.99969 * 264.78538 * 16 15 14 18 18 C 1.37867 * 120.00079 * 84.78804 * 16 15 14 19 19 N 1.31517 * 120.00036 * 352.23353 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 172.23251 * 18 16 15 21 21 H 1.48495 * 109.47136 * 59.99553 * 20 18 16 22 22 H 1.48494 * 109.47719 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46853 * 300.00080 * 20 18 16 24 24 C 1.52996 * 117.49638 * 279.52227 * 15 14 11 25 25 C 1.52994 * 117.50016 * 210.86132 * 15 14 11 26 26 H 1.08992 * 109.47489 * 60.00411 * 1 2 3 27 27 H 1.09003 * 109.46567 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46759 * 299.99413 * 1 2 3 29 29 H 1.09002 * 109.46527 * 240.00098 * 2 1 3 30 30 H 1.08998 * 109.47117 * 119.99821 * 2 1 3 31 31 H 1.09004 * 109.46936 * 270.00054 * 4 3 2 32 32 H 1.09001 * 109.47182 * 30.00175 * 4 3 2 33 33 H 1.08999 * 109.47094 * 149.99864 * 4 3 2 34 34 H 1.09000 * 109.47590 * 179.97438 * 9 7 5 35 35 H 1.09000 * 109.46976 * 299.99975 * 9 7 5 36 36 H 1.09005 * 109.47366 * 59.99230 * 9 7 5 37 37 H 0.97002 * 119.99781 * 35.00670 * 10 7 5 38 38 H 1.09004 * 109.47288 * 293.67932 * 14 11 10 39 39 H 1.09002 * 109.47137 * 53.67516 * 14 11 10 40 40 H 0.97002 * 119.99808 * 185.02785 * 19 18 16 41 41 H 1.08996 * 117.50158 * 359.97438 * 24 15 14 42 42 H 1.09007 * 117.50011 * 145.01859 * 24 15 14 43 43 H 1.09006 * 117.49953 * 214.97621 * 25 15 14 44 44 H 1.08994 * 117.50095 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2688 5 6 2.2429 2.0166 1.1671 6 8 2.0413 1.4447 2.2175 7 6 2.7458 3.4372 1.1672 8 1 2.0280 4.0766 0.6532 9 6 4.0936 3.5012 0.4461 10 7 2.9090 3.8974 2.5483 11 16 2.5952 5.4762 2.9376 12 8 2.8812 5.5580 4.3272 13 8 3.3433 6.2260 1.9904 14 6 0.8162 5.6704 2.6414 15 6 0.3681 7.0541 3.1164 16 6 0.9490 8.2207 2.3597 17 1 1.8308 8.7208 2.7322 18 6 0.3548 8.6497 1.1920 19 7 -0.6231 7.9518 0.6568 20 14 0.9384 10.2222 0.3699 21 1 2.3743 10.0916 0.0147 22 1 0.1433 10.4619 -0.8612 23 1 0.7612 11.3638 1.3030 24 6 0.1146 7.2389 4.6139 25 6 -1.0636 7.1925 3.6378 26 1 -0.3634 0.5137 -0.8899 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 3.2919 1.9006 -1.5835 32 1 1.5815 1.6877 -2.0284 33 1 2.0954 3.1411 -1.1385 34 1 4.4571 4.5289 0.4457 35 1 4.8113 2.8618 0.9600 36 1 3.9726 3.1586 -0.5816 37 1 3.2009 3.2774 3.2348 38 1 0.6121 5.5686 1.5755 39 1 0.2705 4.9033 3.1907 40 1 -0.9920 8.2129 -0.2015 41 1 0.2667 6.3748 5.2605 42 1 0.3676 8.2046 5.0518 43 1 -1.5853 8.1277 3.4339 44 1 -1.6864 6.2981 3.6420 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475258876.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:31 Heat of formation + Delta-G solvation = -102.659899 kcal Electronic energy + Delta-G solvation = -26412.572292 eV Core-core repulsion = 22685.385851 eV Total energy + Delta-G solvation = -3727.186442 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.28209 -38.58906 -38.01856 -37.08467 -36.85929 -36.50537 -34.07451 -32.57505 -30.33196 -29.90511 -27.82151 -27.48237 -25.64909 -23.48802 -23.01704 -21.59103 -20.56368 -20.32643 -18.92248 -18.32998 -17.89943 -17.49869 -16.91984 -16.80809 -16.65322 -16.26244 -15.80065 -15.49440 -15.04632 -14.95323 -14.83908 -14.40597 -13.84664 -13.75801 -13.75446 -13.59035 -13.23924 -13.13676 -13.10109 -12.94723 -12.93032 -12.87961 -12.82327 -12.66006 -12.42781 -12.32114 -12.24880 -11.94771 -11.93007 -11.60653 -11.03029 -10.88210 -10.57484 -10.52719 -9.91378 -9.71084 -8.17267 -6.32759 -0.57872 1.43334 1.44140 1.45861 1.51867 1.74588 2.11824 2.42102 2.88780 3.08881 3.32399 3.35553 3.41447 3.78020 3.91604 4.01423 4.13579 4.22700 4.27656 4.30279 4.37684 4.50385 4.55480 4.57689 4.69886 4.74908 4.80335 4.83473 4.89090 4.95403 5.01890 5.04135 5.17775 5.28972 5.30719 5.42138 5.56182 5.56527 5.72880 5.96946 6.22728 6.27574 6.73200 7.02882 7.39647 8.89907 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014149 B = 0.004645 C = 0.004385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.409385 B = 6026.559401 C = 6384.060882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.108 3.892 3 N -0.609 5.609 4 C 0.055 3.945 5 C 0.511 3.489 6 O -0.567 6.567 7 C 0.127 3.873 8 H 0.113 0.887 9 C -0.176 4.176 10 N -1.104 6.104 11 S 2.628 3.372 12 O -0.994 6.994 13 O -0.975 6.975 14 C -0.555 4.555 15 C 0.013 3.987 16 C -0.535 4.535 17 H 0.051 0.949 18 C 0.046 3.954 19 N -0.892 5.892 20 Si 0.937 3.063 21 H -0.273 1.273 22 H -0.273 1.273 23 H -0.271 1.271 24 C -0.200 4.200 25 C -0.138 4.138 26 H 0.066 0.934 27 H 0.083 0.917 28 H 0.029 0.971 29 H 0.113 0.887 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.112 0.888 37 H 0.422 0.578 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.267 0.733 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.700 -15.852 -7.696 18.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.014 4.014 3 N -0.342 5.342 4 C -0.086 4.086 5 C 0.297 3.703 6 O -0.446 6.446 7 C 0.016 3.984 8 H 0.131 0.869 9 C -0.235 4.235 10 N -0.863 5.863 11 S 2.725 3.275 12 O -0.984 6.984 13 O -0.964 6.964 14 C -0.687 4.687 15 C 0.011 3.989 16 C -0.572 4.572 17 H 0.069 0.931 18 C -0.157 4.157 19 N -0.528 5.528 20 Si 0.762 3.238 21 H -0.199 1.199 22 H -0.198 1.198 23 H -0.197 1.197 24 C -0.237 4.237 25 C -0.177 4.177 26 H 0.085 0.915 27 H 0.102 0.898 28 H 0.048 0.952 29 H 0.131 0.869 30 H 0.085 0.915 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.088 0.912 36 H 0.130 0.870 37 H 0.258 0.742 38 H 0.145 0.855 39 H 0.141 0.859 40 H 0.076 0.924 41 H 0.112 0.888 42 H 0.104 0.896 43 H 0.088 0.912 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.037 -15.403 -7.142 17.452 hybrid contribution -0.517 0.479 -0.161 0.722 sum 3.521 -14.925 -7.304 16.985 Atomic orbital electron populations 1.22118 0.95746 1.03055 1.01509 1.21615 0.94540 0.81219 1.04050 1.47956 1.64974 1.14969 1.06297 1.22411 1.03704 0.98155 0.84331 1.20800 0.77076 0.88396 0.84002 1.90657 1.53402 1.68086 1.32452 1.20829 1.00789 0.93671 0.83159 0.86912 1.22558 0.94152 1.04425 1.02342 1.55517 1.84518 1.30547 1.15764 1.04362 0.78130 0.71993 0.73060 1.93471 1.85061 1.85678 1.34229 1.93496 1.68976 1.69915 1.64049 1.29912 1.22755 1.05089 1.10962 1.18423 0.98546 0.90183 0.91776 1.20639 1.12785 1.14703 1.09068 0.93110 1.25507 0.94129 0.99034 0.97080 1.70025 1.25524 1.39854 1.17363 0.85932 0.78768 0.80783 0.78303 1.19865 1.19805 1.19658 1.23250 1.05073 1.02344 0.93010 1.22502 0.91097 1.01006 1.03089 0.91513 0.89849 0.95160 0.86904 0.91476 0.89330 0.88367 0.90599 0.91050 0.91188 0.86960 0.74212 0.85544 0.85925 0.92415 0.88816 0.89620 0.91203 0.89796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 71.98 0.74 -1.92 16 2 C 0.11 1.67 6.13 86.38 0.53 2.20 16 3 N -0.61 -11.33 2.87 -846.73 -2.43 -13.77 16 4 C 0.06 0.64 8.80 127.77 1.12 1.76 16 5 C 0.51 13.51 7.14 87.66 0.63 14.13 16 6 O -0.57 -18.81 15.57 -3.04 -0.05 -18.86 16 7 C 0.13 3.44 2.28 44.25 0.10 3.55 16 8 H 0.11 3.00 6.56 -2.38 -0.02 2.98 16 9 C -0.18 -3.90 9.15 71.98 0.66 -3.25 16 10 N -1.10 -35.81 5.15 -172.54 -0.89 -36.70 16 11 S 2.63 108.05 5.11 -56.49 -0.29 107.76 16 12 O -0.99 -45.21 18.08 -127.65 -2.31 -47.52 16 13 O -0.97 -45.25 16.78 -127.65 -2.14 -47.39 16 14 C -0.55 -23.46 5.76 71.98 0.41 -23.04 16 15 C 0.01 0.63 1.32 -52.93 -0.07 0.56 16 16 C -0.53 -29.20 8.19 25.60 0.21 -28.99 16 17 H 0.05 2.87 7.83 -2.91 -0.02 2.85 16 18 C 0.05 2.44 5.38 84.65 0.46 2.90 16 19 N -0.89 -47.73 12.98 21.44 0.28 -47.45 16 20 Si 0.94 42.70 29.55 68.60 2.03 44.73 16 21 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 C -0.20 -8.84 9.96 30.62 0.30 -8.53 16 25 C -0.14 -6.29 9.49 30.62 0.29 -6.00 16 26 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.03 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.11 0.96 8.07 -2.39 -0.02 0.94 16 30 H 0.07 1.29 7.42 -2.39 -0.02 1.27 16 31 H 0.09 0.65 6.95 -2.38 -0.02 0.63 16 32 H 0.10 0.71 8.07 -2.39 -0.02 0.70 16 33 H 0.08 1.00 6.01 -2.39 -0.01 0.98 16 34 H 0.07 1.89 7.42 -2.39 -0.02 1.88 16 35 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.64 4.53 -2.38 -0.01 1.63 16 37 H 0.42 13.05 8.17 -96.74 -0.79 12.26 16 38 H 0.13 5.41 7.64 -2.39 -0.02 5.40 16 39 H 0.12 4.53 8.09 -2.39 -0.02 4.51 16 40 H 0.27 13.51 8.32 -92.71 -0.77 12.73 16 41 H 0.09 3.77 8.14 -2.39 -0.02 3.75 16 42 H 0.09 3.76 8.14 -2.38 -0.02 3.74 16 43 H 0.07 3.38 8.14 -2.38 -0.02 3.36 16 44 H 0.08 3.47 8.14 -2.39 -0.02 3.46 16 Total: -1.00 -72.95 371.48 -0.21 -73.15 By element: Atomic # 1 Polarization: 32.46 SS G_CDS: 0.21 Total: 32.67 kcal Atomic # 6 Polarization: -52.02 SS G_CDS: 5.38 Total: -46.63 kcal Atomic # 7 Polarization: -94.88 SS G_CDS: -3.04 Total: -97.92 kcal Atomic # 8 Polarization: -109.27 SS G_CDS: -4.50 Total: -113.77 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Atomic # 16 Polarization: 108.05 SS G_CDS: -0.29 Total: 107.76 kcal Total: -72.95 -0.21 -73.15 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475258876.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.505 kcal (2) G-P(sol) polarization free energy of solvation -72.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds