Wall clock time and date at job start Tue Mar 31 2020 13:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47495 * 2 1 4 4 C 1.46498 * 119.99956 * 270.00376 * 3 2 1 5 5 C 1.34779 * 119.99838 * 89.99774 * 3 2 1 6 6 O 1.21275 * 120.00421 * 1.79851 * 5 3 2 7 7 C 1.50702 * 119.99716 * 181.79851 * 5 3 2 8 8 H 1.08995 * 109.47589 * 323.80241 * 7 5 3 9 9 C 1.53007 * 109.46964 * 83.80133 * 7 5 3 10 10 N 1.46499 * 109.47217 * 203.79723 * 7 5 3 11 11 S 1.65602 * 119.99945 * 144.99898 * 10 7 5 12 12 O 1.42098 * 104.28005 * 308.93503 * 11 10 7 13 13 O 1.42101 * 104.27657 * 181.07078 * 11 10 7 14 14 C 1.81402 * 104.44724 * 65.00390 * 11 10 7 15 15 C 1.52998 * 109.47022 * 182.66096 * 14 11 10 16 16 C 1.50695 * 115.55108 * 296.15478 * 15 14 11 17 17 H 1.08003 * 120.00159 * 114.66421 * 16 15 14 18 18 C 1.37885 * 120.00394 * 294.39069 * 16 15 14 19 19 N 1.31513 * 120.00229 * 173.89852 * 18 16 15 20 20 Si 1.86803 * 119.99591 * 353.89930 * 18 16 15 21 21 H 1.48493 * 109.47274 * 93.30711 * 20 18 16 22 22 H 1.48500 * 109.46916 * 213.30764 * 20 18 16 23 23 H 1.48505 * 109.47235 * 333.30900 * 20 18 16 24 24 C 1.52992 * 117.50076 * 81.82861 * 15 14 11 25 25 C 1.53008 * 117.49963 * 150.48991 * 15 14 11 26 26 H 1.08996 * 109.46720 * 300.00164 * 1 2 3 27 27 H 1.08994 * 109.46846 * 59.99633 * 1 2 3 28 28 H 1.09001 * 109.46677 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47384 * 239.99603 * 2 1 3 30 30 H 1.09004 * 109.47048 * 119.99848 * 2 1 3 31 31 H 1.09003 * 109.47030 * 264.56614 * 4 3 2 32 32 H 1.09002 * 109.47201 * 24.56731 * 4 3 2 33 33 H 1.09000 * 109.47285 * 144.57233 * 4 3 2 34 34 H 1.08997 * 109.47172 * 185.75171 * 9 7 5 35 35 H 1.09005 * 109.47033 * 305.75087 * 9 7 5 36 36 H 1.08996 * 109.46912 * 65.75039 * 9 7 5 37 37 H 0.97003 * 119.99806 * 325.00666 * 10 7 5 38 38 H 1.09000 * 109.47298 * 62.65914 * 14 11 10 39 39 H 1.09008 * 109.47267 * 302.66312 * 14 11 10 40 40 H 0.97004 * 119.99542 * 180.02562 * 19 18 16 41 41 H 1.09003 * 117.50269 * 215.00435 * 24 15 14 42 42 H 1.09006 * 117.50010 * 0.02562 * 24 15 14 43 43 H 1.08999 * 117.49696 * 359.97312 * 25 15 14 44 44 H 1.08991 * 117.50173 * 144.97184 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2431 2.0165 1.1672 6 8 2.0721 1.4343 2.2173 7 6 2.7067 3.4504 1.1675 8 1 3.3835 3.6137 0.3289 9 6 1.4968 4.3776 1.0343 10 7 3.4059 3.7373 2.4225 11 16 4.6973 4.7739 2.4326 12 8 5.5451 4.2876 1.4011 13 8 5.1254 4.7873 3.7875 14 6 3.9918 6.3804 1.9721 15 6 5.1096 7.4211 1.8813 16 6 5.8310 7.7144 3.1714 17 1 6.8758 7.4613 3.2755 18 6 5.1588 8.3108 4.2172 19 7 5.7519 8.4578 5.3817 20 14 3.4055 8.9101 3.9796 21 1 2.4578 7.8456 4.3961 22 1 3.1810 10.1236 4.8056 23 1 3.1840 9.2377 2.5482 24 6 5.9263 7.4698 0.5885 25 6 4.9187 8.5793 0.8998 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.3158 1.9814 -1.5348 32 1 1.6504 1.6224 -2.0507 33 1 2.0033 3.1254 -1.1647 34 1 1.8381 5.4077 0.9318 35 1 0.9192 4.0968 0.1536 36 1 0.8715 4.2887 1.9226 37 1 3.1124 3.3200 3.2476 38 1 3.2683 6.6892 2.7265 39 1 3.4950 6.2955 1.0055 40 1 5.2787 8.8771 6.1174 41 1 6.9854 7.7138 0.6710 42 1 5.6670 6.7606 -0.1977 43 1 3.9969 8.5994 0.3184 44 1 5.3144 9.5532 1.1873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001475258879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:36 Heat of formation + Delta-G solvation = -75.814765 kcal Electronic energy + Delta-G solvation = -26408.364275 eV Core-core repulsion = 22682.341926 eV Total energy + Delta-G solvation = -3726.022349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.35043 -37.13601 -36.45688 -36.22580 -35.47880 -35.15559 -32.19341 -31.68854 -29.71716 -28.59389 -27.05764 -25.57687 -24.91996 -22.70029 -21.67448 -19.77046 -19.48504 -18.86741 -17.74845 -17.02971 -16.67035 -16.37782 -15.95580 -15.32969 -15.30400 -14.88762 -14.47830 -14.21978 -13.94651 -13.88336 -13.70998 -13.23799 -13.01011 -12.84612 -12.67350 -12.57519 -12.37894 -12.25771 -12.21444 -11.92928 -11.47149 -11.37216 -11.32190 -11.21886 -11.17270 -10.83209 -10.74358 -10.51121 -10.21200 -10.02257 -9.66234 -9.38912 -9.15357 -8.99024 -8.75868 -8.44275 -6.16316 -4.22441 0.87997 2.38233 2.66265 3.15690 3.29747 3.30699 3.34321 4.14635 4.33431 4.41920 4.70232 4.72489 4.73075 4.76267 4.79309 4.86009 4.89225 5.04915 5.09318 5.14875 5.22097 5.32844 5.33944 5.40059 5.48014 5.59386 5.62270 5.83418 5.85118 5.89112 5.98263 6.01287 6.21761 6.24107 6.43239 6.59002 6.84052 7.00724 7.05228 7.23321 7.58415 7.91671 8.38472 8.88628 9.44614 10.95353 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.004184 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.655255 B = 6690.854717 C = 6819.435001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.109 3.891 3 N -0.618 5.618 4 C 0.067 3.933 5 C 0.520 3.480 6 O -0.527 6.527 7 C 0.129 3.871 8 H 0.112 0.888 9 C -0.177 4.177 10 N -1.117 6.117 11 S 2.614 3.386 12 O -0.967 6.967 13 O -0.924 6.924 14 C -0.581 4.581 15 C 0.001 3.999 16 C -0.511 4.511 17 H 0.086 0.914 18 C 0.093 3.907 19 N -0.875 5.875 20 Si 0.854 3.146 21 H -0.276 1.276 22 H -0.286 1.286 23 H -0.244 1.244 24 C -0.180 4.180 25 C -0.176 4.176 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.422 0.578 38 H 0.121 0.879 39 H 0.109 0.891 40 H 0.268 0.732 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.071 0.929 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.454 -11.569 -15.563 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.013 4.013 3 N -0.353 5.353 4 C -0.075 4.075 5 C 0.306 3.694 6 O -0.402 6.402 7 C 0.017 3.983 8 H 0.130 0.870 9 C -0.236 4.236 10 N -0.875 5.875 11 S 2.709 3.291 12 O -0.957 6.957 13 O -0.914 6.914 14 C -0.712 4.712 15 C -0.002 4.002 16 C -0.548 4.548 17 H 0.104 0.896 18 C -0.113 4.113 19 N -0.510 5.510 20 Si 0.680 3.320 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.168 1.168 24 C -0.218 4.218 25 C -0.215 4.215 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.258 0.742 38 H 0.139 0.861 39 H 0.127 0.873 40 H 0.078 0.922 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.090 0.910 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -11.592 -12.007 -14.730 22.260 hybrid contribution -1.801 0.640 0.083 1.914 sum -13.394 -11.367 -14.647 22.872 Atomic orbital electron populations 1.22133 0.95822 1.02260 1.02347 1.21460 0.94391 0.82071 1.03409 1.47879 1.66679 1.14481 1.06263 1.21989 1.02183 0.98115 0.85261 1.20675 0.76781 0.88491 0.83492 1.90679 1.51073 1.67393 1.31006 1.20645 0.96177 0.92432 0.89039 0.87017 1.22456 0.97477 1.00045 1.03656 1.56063 1.53162 1.63632 1.14648 1.05048 0.73306 0.75688 0.75082 1.93502 1.63072 1.78486 1.60656 1.93642 1.77910 1.85961 1.33838 1.30405 1.10485 1.20816 1.09492 1.18829 0.94076 0.94708 0.92538 1.20337 0.98604 1.42143 0.93685 0.89596 1.24898 0.97614 0.94308 0.94451 1.69883 1.37939 1.41497 1.01652 0.87198 0.85658 0.79024 0.80083 1.20214 1.21214 1.16763 1.22990 0.97803 1.02143 0.98820 1.23061 0.99158 0.95041 1.04252 0.92185 0.92570 0.91557 0.90391 0.89693 0.91675 0.90450 0.90639 0.90279 0.90771 0.90580 0.74218 0.86137 0.87267 0.92244 0.88839 0.90065 0.91045 0.89047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 10.24 37.16 0.38 -0.82 16 2 C 0.11 0.91 6.11 -4.04 -0.02 0.88 16 3 N -0.62 -6.04 2.87 -181.57 -0.52 -6.56 16 4 C 0.07 0.43 9.75 59.85 0.58 1.01 16 5 C 0.52 6.88 6.89 -10.98 -0.08 6.80 16 6 O -0.53 -8.68 15.65 5.56 0.09 -8.60 16 7 C 0.13 1.65 2.37 -69.08 -0.16 1.49 16 8 H 0.11 1.27 6.34 -51.93 -0.33 0.94 16 9 C -0.18 -1.78 9.15 37.16 0.34 -1.44 16 10 N -1.12 -18.14 5.30 -5.88 -0.03 -18.17 16 11 S 2.61 53.28 5.19 -107.50 -0.56 52.72 16 12 O -0.97 -20.56 17.39 -57.54 -1.00 -21.56 16 13 O -0.92 -23.36 17.50 -57.54 -1.01 -24.36 16 14 C -0.58 -11.18 4.95 37.16 0.18 -11.00 16 15 C 0.00 0.03 0.81 -155.66 -0.13 -0.10 16 16 C -0.51 -14.13 8.50 -34.44 -0.29 -14.43 16 17 H 0.09 2.62 8.06 -52.48 -0.42 2.20 16 18 C 0.09 2.64 5.47 -17.82 -0.10 2.55 16 19 N -0.88 -26.68 13.96 55.43 0.77 -25.90 16 20 Si 0.85 20.33 25.01 -169.99 -4.25 16.08 16 21 H -0.28 -6.35 7.02 56.52 0.40 -5.96 16 22 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.24 -5.26 5.70 56.52 0.32 -4.94 16 24 C -0.18 -3.53 9.96 -26.70 -0.27 -3.80 16 25 C -0.18 -3.45 7.99 -26.69 -0.21 -3.67 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.08 0.46 8.07 -51.93 -0.42 0.04 16 30 H 0.08 0.86 7.40 -51.93 -0.38 0.48 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.31 8.03 -51.93 -0.42 -0.11 16 33 H 0.07 0.41 5.40 -51.93 -0.28 0.12 16 34 H 0.08 0.76 5.82 -51.93 -0.30 0.46 16 35 H 0.07 0.53 6.87 -51.93 -0.36 0.18 16 36 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.42 6.83 8.07 -34.48 -0.28 6.56 16 38 H 0.12 2.36 5.11 -51.92 -0.27 2.09 16 39 H 0.11 1.58 6.46 -51.92 -0.34 1.24 16 40 H 0.27 7.60 8.31 -40.82 -0.34 7.26 16 41 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.09 1.85 8.14 -51.93 -0.42 1.42 16 LS Contribution 362.11 15.07 5.46 5.46 Total: -1.00 -36.68 362.11 -7.64 -44.32 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -6.81 Total: 9.09 kcal Atomic # 6 Polarization: -22.75 SS G_CDS: 0.23 Total: -22.52 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: 0.22 Total: -50.63 kcal Atomic # 8 Polarization: -52.60 SS G_CDS: -1.92 Total: -54.52 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -4.25 Total: 16.08 kcal Atomic # 16 Polarization: 53.28 SS G_CDS: -0.56 Total: 52.72 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -36.68 -7.64 -44.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475258879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.498 kcal (2) G-P(sol) polarization free energy of solvation -36.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds