Wall clock time and date at job start Tue Mar 31 2020 13:13:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47495 * 2 1 4 4 C 1.46498 * 119.99956 * 270.00376 * 3 2 1 5 5 C 1.34779 * 119.99838 * 89.99774 * 3 2 1 6 6 O 1.21275 * 120.00421 * 1.79851 * 5 3 2 7 7 C 1.50702 * 119.99716 * 181.79851 * 5 3 2 8 8 H 1.08995 * 109.47589 * 323.80241 * 7 5 3 9 9 C 1.53007 * 109.46964 * 83.80133 * 7 5 3 10 10 N 1.46499 * 109.47217 * 203.79723 * 7 5 3 11 11 S 1.65602 * 119.99945 * 144.99898 * 10 7 5 12 12 O 1.42098 * 104.28005 * 308.93503 * 11 10 7 13 13 O 1.42101 * 104.27657 * 181.07078 * 11 10 7 14 14 C 1.81402 * 104.44724 * 65.00390 * 11 10 7 15 15 C 1.52998 * 109.47022 * 182.66096 * 14 11 10 16 16 C 1.50695 * 115.55108 * 296.15478 * 15 14 11 17 17 H 1.08003 * 120.00159 * 114.66421 * 16 15 14 18 18 C 1.37885 * 120.00394 * 294.39069 * 16 15 14 19 19 N 1.31513 * 120.00229 * 173.89852 * 18 16 15 20 20 Si 1.86803 * 119.99591 * 353.89930 * 18 16 15 21 21 H 1.48493 * 109.47274 * 93.30711 * 20 18 16 22 22 H 1.48500 * 109.46916 * 213.30764 * 20 18 16 23 23 H 1.48505 * 109.47235 * 333.30900 * 20 18 16 24 24 C 1.52992 * 117.50076 * 81.82861 * 15 14 11 25 25 C 1.53008 * 117.49963 * 150.48991 * 15 14 11 26 26 H 1.08996 * 109.46720 * 300.00164 * 1 2 3 27 27 H 1.08994 * 109.46846 * 59.99633 * 1 2 3 28 28 H 1.09001 * 109.46677 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47384 * 239.99603 * 2 1 3 30 30 H 1.09004 * 109.47048 * 119.99848 * 2 1 3 31 31 H 1.09003 * 109.47030 * 264.56614 * 4 3 2 32 32 H 1.09002 * 109.47201 * 24.56731 * 4 3 2 33 33 H 1.09000 * 109.47285 * 144.57233 * 4 3 2 34 34 H 1.08997 * 109.47172 * 185.75171 * 9 7 5 35 35 H 1.09005 * 109.47033 * 305.75087 * 9 7 5 36 36 H 1.08996 * 109.46912 * 65.75039 * 9 7 5 37 37 H 0.97003 * 119.99806 * 325.00666 * 10 7 5 38 38 H 1.09000 * 109.47298 * 62.65914 * 14 11 10 39 39 H 1.09008 * 109.47267 * 302.66312 * 14 11 10 40 40 H 0.97004 * 119.99542 * 180.02562 * 19 18 16 41 41 H 1.09003 * 117.50269 * 215.00435 * 24 15 14 42 42 H 1.09006 * 117.50010 * 0.02562 * 24 15 14 43 43 H 1.08999 * 117.49696 * 359.97312 * 25 15 14 44 44 H 1.08991 * 117.50173 * 144.97184 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2431 2.0165 1.1672 6 8 2.0721 1.4343 2.2173 7 6 2.7067 3.4504 1.1675 8 1 3.3835 3.6137 0.3289 9 6 1.4968 4.3776 1.0343 10 7 3.4059 3.7373 2.4225 11 16 4.6973 4.7739 2.4326 12 8 5.5451 4.2876 1.4011 13 8 5.1254 4.7873 3.7875 14 6 3.9918 6.3804 1.9721 15 6 5.1096 7.4211 1.8813 16 6 5.8310 7.7144 3.1714 17 1 6.8758 7.4613 3.2755 18 6 5.1588 8.3108 4.2172 19 7 5.7519 8.4578 5.3817 20 14 3.4055 8.9101 3.9796 21 1 2.4578 7.8456 4.3961 22 1 3.1810 10.1236 4.8056 23 1 3.1840 9.2377 2.5482 24 6 5.9263 7.4698 0.5885 25 6 4.9187 8.5793 0.8998 26 1 -0.3632 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.3158 1.9814 -1.5348 32 1 1.6504 1.6224 -2.0507 33 1 2.0033 3.1254 -1.1647 34 1 1.8381 5.4077 0.9318 35 1 0.9192 4.0968 0.1536 36 1 0.8715 4.2887 1.9226 37 1 3.1124 3.3200 3.2476 38 1 3.2683 6.6892 2.7265 39 1 3.4950 6.2955 1.0055 40 1 5.2787 8.8771 6.1174 41 1 6.9854 7.7138 0.6710 42 1 5.6670 6.7606 -0.1977 43 1 3.9969 8.5994 0.3184 44 1 5.3144 9.5532 1.1873 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001475258879.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:13:35 Heat of formation + Delta-G solvation = -106.215544 kcal Electronic energy + Delta-G solvation = -26409.682551 eV Core-core repulsion = 22682.341926 eV Total energy + Delta-G solvation = -3727.340626 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 318.145 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.25963 -38.79394 -38.07531 -37.13317 -36.87518 -36.54346 -34.29412 -32.41927 -30.67924 -30.09851 -27.69013 -27.56690 -25.72540 -23.49711 -23.20098 -21.37570 -20.47793 -20.38211 -19.00554 -18.63335 -17.96528 -17.56933 -17.13385 -16.79965 -16.68733 -16.31010 -15.73227 -15.47042 -15.00969 -14.94319 -14.78344 -14.55351 -14.41877 -14.00078 -13.74165 -13.51508 -13.31834 -13.13980 -13.07496 -13.02673 -12.97706 -12.88829 -12.83103 -12.63595 -12.60518 -12.35758 -12.10563 -11.94512 -11.83493 -11.55150 -11.09137 -10.91933 -10.69157 -10.59009 -10.16549 -9.73230 -8.29603 -6.40925 -0.67844 1.30260 1.38401 1.41913 1.52199 1.77748 2.06441 2.36807 2.86917 2.97662 3.20047 3.32164 3.37428 3.77902 3.83694 3.97740 4.01053 4.12428 4.27519 4.30081 4.31457 4.34680 4.46844 4.54192 4.61382 4.69107 4.77712 4.79847 4.90903 4.96444 5.00200 5.01721 5.03032 5.23379 5.27482 5.29877 5.54941 5.56355 5.63427 5.88869 6.24029 6.27115 6.68665 7.02290 7.30273 8.87133 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.021245 B = 0.004184 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.655255 B = 6690.854717 C = 6819.435001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.611 5.611 4 C 0.054 3.946 5 C 0.510 3.490 6 O -0.574 6.574 7 C 0.117 3.883 8 H 0.131 0.869 9 C -0.178 4.178 10 N -1.112 6.112 11 S 2.615 3.385 12 O -0.984 6.984 13 O -0.992 6.992 14 C -0.569 4.569 15 C -0.040 4.040 16 C -0.514 4.514 17 H 0.026 0.974 18 C 0.026 3.974 19 N -0.941 5.941 20 Si 0.912 3.088 21 H -0.263 1.263 22 H -0.293 1.293 23 H -0.194 1.194 24 C -0.174 4.174 25 C -0.153 4.153 26 H 0.033 0.967 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.107 0.893 33 H 0.091 0.909 34 H 0.092 0.908 35 H 0.108 0.892 36 H 0.066 0.934 37 H 0.420 0.580 38 H 0.122 0.878 39 H 0.172 0.828 40 H 0.266 0.734 41 H 0.077 0.923 42 H 0.118 0.882 43 H 0.119 0.881 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.069 -11.189 -20.379 28.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.344 5.344 4 C -0.087 4.087 5 C 0.297 3.703 6 O -0.454 6.454 7 C 0.007 3.993 8 H 0.148 0.852 9 C -0.236 4.236 10 N -0.872 5.872 11 S 2.712 3.288 12 O -0.974 6.974 13 O -0.982 6.982 14 C -0.701 4.701 15 C -0.042 4.042 16 C -0.551 4.551 17 H 0.044 0.956 18 C -0.174 4.174 19 N -0.579 5.579 20 Si 0.734 3.266 21 H -0.189 1.189 22 H -0.220 1.220 23 H -0.115 1.115 24 C -0.211 4.211 25 C -0.192 4.192 26 H 0.053 0.947 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.127 0.873 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.125 0.875 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.127 0.873 36 H 0.085 0.915 37 H 0.256 0.744 38 H 0.140 0.860 39 H 0.190 0.810 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.194 -11.664 -19.635 27.431 hybrid contribution -0.550 0.414 1.475 1.628 sum -15.745 -11.250 -18.160 26.538 Atomic orbital electron populations 1.22065 0.94714 1.03065 1.01928 1.21628 0.95304 0.81482 1.03547 1.48022 1.65038 1.14842 1.06496 1.22345 1.03121 0.99115 0.84138 1.20874 0.76771 0.88765 0.83919 1.90660 1.53490 1.68334 1.32872 1.21092 0.97560 0.93075 0.87595 0.85191 1.22522 0.96294 0.99854 1.04963 1.55661 1.52521 1.62845 1.16183 1.04679 0.73901 0.76718 0.73477 1.93463 1.64500 1.79163 1.60297 1.93563 1.80046 1.87194 1.37384 1.30226 1.09320 1.17599 1.12980 1.18746 0.96401 0.98070 0.91008 1.20500 0.96629 1.41189 0.96782 0.95573 1.25950 1.03153 0.94525 0.93736 1.70080 1.40583 1.44025 1.03172 0.86284 0.79229 0.78313 0.82769 1.18862 1.21982 1.11511 1.23127 0.97238 1.03018 0.97751 1.23164 1.00759 0.93468 1.01774 0.94732 0.90661 0.90263 0.87349 0.92459 0.91460 0.87473 0.89021 0.88948 0.87299 0.91458 0.74424 0.85964 0.81044 0.92470 0.90471 0.86377 0.86245 0.90109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 10.24 71.98 0.74 -1.18 16 2 C 0.10 1.50 6.11 86.38 0.53 2.03 16 3 N -0.61 -10.27 2.87 -846.75 -2.43 -12.71 16 4 C 0.05 0.44 9.75 127.77 1.25 1.68 16 5 C 0.51 12.75 6.89 87.66 0.60 13.36 16 6 O -0.57 -19.23 15.65 -3.01 -0.05 -19.28 16 7 C 0.12 2.67 2.37 44.25 0.10 2.77 16 8 H 0.13 2.43 6.34 -2.39 -0.02 2.41 16 9 C -0.18 -2.74 9.15 71.98 0.66 -2.08 16 10 N -1.11 -35.17 5.30 -172.52 -0.91 -36.09 16 11 S 2.61 105.58 5.19 -56.49 -0.29 105.29 16 12 O -0.98 -41.08 17.39 -127.65 -2.22 -43.30 16 13 O -0.99 -52.83 17.50 -127.65 -2.23 -55.07 16 14 C -0.57 -19.77 4.95 71.98 0.36 -19.41 16 15 C -0.04 -1.68 0.81 -52.93 -0.04 -1.72 16 16 C -0.51 -29.36 8.50 25.60 0.22 -29.14 16 17 H 0.03 1.73 8.06 -2.91 -0.02 1.70 16 18 C 0.03 1.50 5.47 84.66 0.46 1.96 16 19 N -0.94 -60.78 13.96 21.45 0.30 -60.48 16 20 Si 0.91 40.82 25.01 68.60 1.72 42.54 16 21 H -0.26 -11.17 7.02 99.48 0.70 -10.47 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 23 H -0.19 -7.05 5.70 99.48 0.57 -6.48 16 24 C -0.17 -6.26 9.96 30.62 0.30 -5.95 16 25 C -0.15 -5.21 7.99 30.62 0.24 -4.97 16 26 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.11 0.92 8.07 -2.39 -0.02 0.90 16 30 H 0.06 1.17 7.40 -2.38 -0.02 1.15 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.11 0.27 8.03 -2.39 -0.02 0.25 16 33 H 0.09 0.46 5.40 -2.39 -0.01 0.45 16 34 H 0.09 1.17 5.82 -2.39 -0.01 1.16 16 35 H 0.11 0.92 6.87 -2.38 -0.02 0.90 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.42 13.93 8.07 -96.74 -0.78 13.15 16 38 H 0.12 4.30 5.11 -2.39 -0.01 4.29 16 39 H 0.17 3.72 6.46 -2.39 -0.02 3.70 16 40 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 41 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 42 H 0.12 3.37 8.14 -2.38 -0.02 3.35 16 43 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 44 H 0.08 2.95 8.14 -2.39 -0.02 2.93 16 Total: -1.00 -89.51 362.11 -0.62 -90.13 By element: Atomic # 1 Polarization: 31.54 SS G_CDS: 0.08 Total: 31.62 kcal Atomic # 6 Polarization: -48.08 SS G_CDS: 5.42 Total: -42.66 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -3.05 Total: -109.28 kcal Atomic # 8 Polarization: -113.14 SS G_CDS: -4.50 Total: -117.65 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.72 Total: 42.54 kcal Atomic # 16 Polarization: 105.58 SS G_CDS: -0.29 Total: 105.29 kcal Total: -89.51 -0.62 -90.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001475258879.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.082 kcal (2) G-P(sol) polarization free energy of solvation -89.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds