Wall clock time and date at job start Tue Mar 31 2020 12:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.47200 * 109.47587 * 120.00114 * 2 1 3 5 5 N 2.60799 * 109.47552 * 120.00160 * 2 1 3 6 6 O 1.42906 * 109.47078 * 240.00459 * 2 1 3 7 7 C 1.35895 * 116.99783 * 86.67996 * 6 2 1 8 8 C 1.38727 * 120.06317 * 354.81489 * 7 6 2 9 9 C 1.38137 * 119.94965 * 179.97438 * 8 7 6 10 10 C 1.38268 * 120.05584 * 0.27766 * 9 8 7 11 11 C 1.50703 * 119.94828 * 179.72870 * 10 9 8 12 12 N 1.46496 * 109.47354 * 89.99423 * 11 10 9 13 13 C 1.36933 * 120.00055 * 270.00392 * 12 11 10 14 14 H 1.08002 * 120.00099 * 141.97076 * 13 12 11 15 15 C 1.38806 * 120.00284 * 321.96784 * 13 12 11 16 16 N 1.31628 * 119.99824 * 340.24167 * 15 13 12 17 17 Si 1.86806 * 120.00409 * 160.24239 * 15 13 12 18 18 H 1.48497 * 109.46960 * 59.99872 * 17 15 13 19 19 H 1.48493 * 109.47230 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46832 * 300.00356 * 17 15 13 21 21 C 1.46504 * 119.99852 * 90.00310 * 12 11 10 22 22 C 1.52993 * 109.47193 * 94.51879 * 21 12 11 23 23 C 1.50698 * 109.47476 * 180.02562 * 22 21 12 24 24 O 1.20827 * 119.99478 * 0.02562 * 23 22 21 25 25 O 1.34232 * 120.00461 * 179.97438 * 23 22 21 26 26 C 1.38269 * 120.10686 * 359.44598 * 10 9 8 27 27 C 1.38140 * 120.05730 * 0.55286 * 26 10 9 28 28 H 1.08997 * 109.47280 * 59.99709 * 1 2 3 29 29 H 1.08997 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46996 * 299.99383 * 1 2 3 31 31 H 1.08003 * 120.02501 * 0.02562 * 8 7 6 32 32 H 1.08000 * 119.97791 * 180.02562 * 9 8 7 33 33 H 1.08997 * 109.47143 * 210.00260 * 11 10 9 34 34 H 1.09007 * 109.46292 * 329.99711 * 11 10 9 35 35 H 0.96997 * 119.99695 * 179.97438 * 16 15 13 36 36 H 1.08995 * 109.47293 * 214.52299 * 21 12 11 37 37 H 1.09000 * 109.46980 * 334.52167 * 21 12 11 38 38 H 1.09005 * 109.47237 * 300.00413 * 22 21 12 39 39 H 1.09004 * 109.47401 * 60.00318 * 22 21 12 40 40 H 0.96691 * 116.99999 * 179.97438 * 25 23 22 41 41 H 1.08007 * 119.97009 * 180.25521 * 26 10 9 42 42 H 1.08003 * 120.02821 * 179.69772 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3995 -1.2294 2.1293 6 8 2.0063 -0.6736 -1.1669 7 6 2.1458 0.0709 -2.2952 8 6 1.7303 1.3944 -2.3103 9 6 1.8737 2.1491 -3.4584 10 6 2.4256 1.5849 -4.5936 11 6 2.5753 2.4088 -5.8466 12 7 3.8801 3.0749 -5.8401 13 6 4.0113 4.3181 -5.2814 14 1 4.9007 4.5676 -4.7218 15 6 3.0013 5.2579 -5.4343 16 7 2.1203 5.1255 -6.4033 17 14 2.8921 6.7106 -4.2648 18 1 4.1411 7.5093 -4.3498 19 1 1.7337 7.5610 -4.6387 20 1 2.7146 6.2157 -2.8761 21 6 5.0445 2.4109 -6.4314 22 6 5.2131 2.8718 -7.8805 23 6 6.4105 2.1883 -8.4889 24 8 7.0618 1.4118 -7.8311 25 8 6.7529 2.4413 -9.7619 26 6 2.8458 0.2677 -4.5794 27 6 2.7046 -0.4913 -3.4338 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.2957 1.8345 -1.4250 32 1 1.5507 3.1796 -3.4706 33 1 2.5031 1.7595 -6.7191 34 1 1.7848 3.1583 -5.8850 35 1 1.4143 5.7820 -6.5098 36 1 5.9375 2.6682 -5.8620 37 1 4.8975 1.3311 -6.4084 38 1 4.3200 2.6144 -8.4499 39 1 5.3602 3.9516 -7.9036 40 1 7.5286 1.9794 -10.1080 41 1 3.2805 -0.1696 -5.4662 42 1 3.0285 -1.5216 -3.4248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589336096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:45 Heat of formation + Delta-G solvation = -55.175161 kcal Electronic energy + Delta-G solvation = -25924.353527 eV Core-core repulsion = 22063.782227 eV Total energy + Delta-G solvation = -3860.571300 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.23597 -39.80575 -37.97762 -36.59898 -35.96244 -35.43063 -32.32795 -32.08704 -30.87056 -30.36827 -28.97874 -25.74753 -24.92620 -24.43816 -22.48071 -21.94144 -20.75676 -19.79076 -18.35990 -18.20149 -17.74146 -16.88736 -16.00116 -15.64859 -15.57949 -15.29886 -15.02949 -14.62567 -14.19787 -13.99750 -13.76387 -13.54408 -13.35017 -13.12153 -13.02565 -12.89640 -12.80015 -12.53635 -12.36858 -12.13611 -11.78986 -11.62211 -11.38690 -11.18641 -11.06947 -10.86477 -10.76806 -10.64255 -10.45918 -10.23235 -10.08966 -10.02109 -9.97306 -8.66138 -8.53319 -7.68169 -6.77713 -5.96139 -3.54738 1.78922 1.88069 2.07139 2.43054 2.63234 3.22834 3.26548 3.33711 3.35707 3.50969 3.83418 4.21784 4.38201 4.51788 4.66319 5.13255 5.17629 5.22447 5.28865 5.38112 5.48338 5.64158 5.74151 5.76377 5.81667 5.85109 5.97159 6.07076 6.15297 6.34587 6.36681 6.63048 6.65446 6.69653 6.76722 6.90208 6.98113 7.09933 7.17558 7.28925 7.53868 7.65071 7.69397 8.26387 8.37440 9.01386 9.61586 10.20304 11.04126 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.003669 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.026413 B = 7628.647340 C = 9359.871318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.183 3.817 3 H 0.118 0.882 4 C 0.217 3.783 5 N -0.407 5.407 6 O -0.308 6.308 7 C 0.099 3.901 8 C -0.210 4.210 9 C -0.058 4.058 10 C -0.098 4.098 11 C 0.174 3.826 12 N -0.571 5.571 13 C -0.261 4.261 14 H 0.062 0.938 15 C 0.018 3.982 16 N -0.884 5.884 17 Si 0.894 3.106 18 H -0.280 1.280 19 H -0.289 1.289 20 H -0.281 1.281 21 C 0.162 3.838 22 C -0.130 4.130 23 C 0.478 3.522 24 O -0.528 6.528 25 O -0.525 6.525 26 C -0.083 4.083 27 C -0.148 4.148 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.035 0.965 34 H 0.107 0.893 35 H 0.258 0.742 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.398 0.602 41 H 0.121 0.879 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.857 -6.464 2.254 7.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.123 3.877 3 H 0.135 0.865 4 C -0.102 4.102 5 N -0.085 5.085 6 O -0.222 6.222 7 C 0.055 3.945 8 C -0.228 4.228 9 C -0.077 4.077 10 C -0.101 4.101 11 C 0.048 3.952 12 N -0.289 5.289 13 C -0.391 4.391 14 H 0.079 0.921 15 C -0.183 4.183 16 N -0.525 5.525 17 Si 0.723 3.277 18 H -0.206 1.206 19 H -0.215 1.215 20 H -0.207 1.207 21 C 0.035 3.965 22 C -0.170 4.170 23 C 0.321 3.679 24 O -0.417 6.417 25 O -0.336 6.336 26 C -0.102 4.102 27 C -0.167 4.167 28 H 0.106 0.894 29 H 0.094 0.906 30 H 0.098 0.902 31 H 0.140 0.860 32 H 0.143 0.857 33 H 0.054 0.946 34 H 0.124 0.876 35 H 0.068 0.932 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.115 0.885 39 H 0.126 0.874 40 H 0.255 0.745 41 H 0.139 0.861 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -2.567 -7.332 3.921 8.702 hybrid contribution 0.346 0.908 0.020 0.972 sum -2.221 -6.424 3.941 7.857 Atomic orbital electron populations 1.22329 0.91719 1.04569 1.04549 1.19372 0.95035 0.95254 0.78024 0.86460 1.28642 0.93349 0.93819 0.94440 1.81203 1.07880 1.07537 1.11885 1.86082 1.82351 1.37107 1.16649 1.18748 0.99426 0.90508 0.85783 1.21186 1.07788 0.93658 1.00198 1.20920 0.96137 0.99207 0.91419 1.21176 0.96025 0.93768 0.99178 1.20060 0.91440 0.94391 0.89277 1.43797 1.04044 1.16199 1.64877 1.19027 1.05197 0.88313 1.26542 0.92075 1.25173 0.99529 0.97051 0.96541 1.69934 1.17717 1.36194 1.28686 0.86508 0.77499 0.82375 0.81278 1.20604 1.21497 1.20686 1.20779 0.91850 0.95355 0.88554 1.22371 0.92065 1.02647 0.99928 1.24424 0.85881 0.79053 0.78514 1.90660 1.53734 1.35287 1.62043 1.84658 1.50057 1.68116 1.30738 1.20911 0.98410 0.94045 0.96789 1.20283 1.04314 1.00582 0.91545 0.89360 0.90643 0.90182 0.86025 0.85662 0.94607 0.87596 0.93195 0.93112 0.93478 0.88483 0.87425 0.74500 0.86110 0.86140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 9.18 37.16 0.34 -0.96 16 2 C 0.18 1.81 2.67 -29.52 -0.08 1.73 16 3 H 0.12 1.01 6.18 -51.93 -0.32 0.69 16 4 C 0.22 2.53 15.03 -20.76 -0.31 2.21 16 5 N -0.41 -5.65 18.54 42.15 0.78 -4.87 16 6 O -0.31 -4.00 9.75 -19.41 -0.19 -4.19 16 7 C 0.10 1.43 6.62 -39.22 -0.26 1.17 16 8 C -0.21 -3.01 8.33 -39.44 -0.33 -3.34 16 9 C -0.06 -1.00 9.69 -39.61 -0.38 -1.38 16 10 C -0.10 -1.78 5.46 -104.60 -0.57 -2.35 16 11 C 0.17 3.54 5.39 -5.19 -0.03 3.51 16 12 N -0.57 -12.44 2.41 -174.62 -0.42 -12.86 16 13 C -0.26 -6.32 9.47 -15.06 -0.14 -6.46 16 14 H 0.06 1.53 7.90 -52.49 -0.41 1.11 16 15 C 0.02 0.44 4.99 -17.43 -0.09 0.35 16 16 N -0.88 -22.26 11.40 55.49 0.63 -21.63 16 17 Si 0.89 19.50 29.60 -169.99 -5.03 14.47 16 18 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 19 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 21 C 0.16 3.16 4.96 -4.04 -0.02 3.14 16 22 C -0.13 -2.30 6.11 -27.89 -0.17 -2.47 16 23 C 0.48 7.80 8.33 36.00 0.30 8.10 16 24 O -0.53 -9.84 16.74 -18.75 -0.31 -10.15 16 25 O -0.52 -6.98 13.42 -39.26 -0.53 -7.51 16 26 C -0.08 -1.33 9.69 -39.61 -0.38 -1.72 16 27 C -0.15 -2.22 9.99 -39.43 -0.39 -2.62 16 28 H 0.09 0.67 7.13 -51.93 -0.37 0.30 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.12 1.37 5.51 -52.48 -0.29 1.08 16 32 H 0.13 2.30 8.06 -52.49 -0.42 1.87 16 33 H 0.04 0.68 8.02 -51.93 -0.42 0.27 16 34 H 0.11 2.43 5.42 -51.93 -0.28 2.15 16 35 H 0.26 6.37 8.31 -40.82 -0.34 6.03 16 36 H 0.05 1.04 8.03 -51.93 -0.42 0.63 16 37 H 0.05 0.88 7.99 -51.93 -0.41 0.46 16 38 H 0.10 1.70 8.14 -51.93 -0.42 1.27 16 39 H 0.11 2.05 8.14 -51.93 -0.42 1.63 16 40 H 0.40 3.38 9.10 45.56 0.41 3.79 16 41 H 0.12 1.80 8.05 -52.48 -0.42 1.37 16 42 H 0.12 1.61 8.06 -52.48 -0.42 1.18 16 LS Contribution 369.44 15.07 5.57 5.57 Total: -1.00 -29.04 369.44 -6.63 -35.67 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.61 Total: 6.59 kcal Atomic # 6 Polarization: 1.43 SS G_CDS: -2.52 Total: -1.08 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: 0.99 Total: -39.36 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -1.03 Total: -21.85 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.03 Total: 14.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.04 -6.63 -35.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589336096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.510 kcal (2) G-P(sol) polarization free energy of solvation -29.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds