Wall clock time and date at job start Tue Mar 31 2020 12:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.47200 * 109.47587 * 120.00114 * 2 1 3 5 5 N 2.60799 * 109.47552 * 120.00160 * 2 1 3 6 6 O 1.42906 * 109.47078 * 240.00459 * 2 1 3 7 7 C 1.35895 * 116.99783 * 86.67996 * 6 2 1 8 8 C 1.38727 * 120.06317 * 354.81489 * 7 6 2 9 9 C 1.38137 * 119.94965 * 179.97438 * 8 7 6 10 10 C 1.38268 * 120.05584 * 0.27766 * 9 8 7 11 11 C 1.50703 * 119.94828 * 179.72870 * 10 9 8 12 12 N 1.46496 * 109.47354 * 89.99423 * 11 10 9 13 13 C 1.36933 * 120.00055 * 270.00392 * 12 11 10 14 14 H 1.08002 * 120.00099 * 141.97076 * 13 12 11 15 15 C 1.38806 * 120.00284 * 321.96784 * 13 12 11 16 16 N 1.31628 * 119.99824 * 340.24167 * 15 13 12 17 17 Si 1.86806 * 120.00409 * 160.24239 * 15 13 12 18 18 H 1.48497 * 109.46960 * 59.99872 * 17 15 13 19 19 H 1.48493 * 109.47230 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.46832 * 300.00356 * 17 15 13 21 21 C 1.46504 * 119.99852 * 90.00310 * 12 11 10 22 22 C 1.52993 * 109.47193 * 94.51879 * 21 12 11 23 23 C 1.50698 * 109.47476 * 180.02562 * 22 21 12 24 24 O 1.20827 * 119.99478 * 0.02562 * 23 22 21 25 25 O 1.34232 * 120.00461 * 179.97438 * 23 22 21 26 26 C 1.38269 * 120.10686 * 359.44598 * 10 9 8 27 27 C 1.38140 * 120.05730 * 0.55286 * 26 10 9 28 28 H 1.08997 * 109.47280 * 59.99709 * 1 2 3 29 29 H 1.08997 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46996 * 299.99383 * 1 2 3 31 31 H 1.08003 * 120.02501 * 0.02562 * 8 7 6 32 32 H 1.08000 * 119.97791 * 180.02562 * 9 8 7 33 33 H 1.08997 * 109.47143 * 210.00260 * 11 10 9 34 34 H 1.09007 * 109.46292 * 329.99711 * 11 10 9 35 35 H 0.96997 * 119.99695 * 179.97438 * 16 15 13 36 36 H 1.08995 * 109.47293 * 214.52299 * 21 12 11 37 37 H 1.09000 * 109.46980 * 334.52167 * 21 12 11 38 38 H 1.09005 * 109.47237 * 300.00413 * 22 21 12 39 39 H 1.09004 * 109.47401 * 60.00318 * 22 21 12 40 40 H 0.96691 * 116.99999 * 179.97438 * 25 23 22 41 41 H 1.08007 * 119.97009 * 180.25521 * 26 10 9 42 42 H 1.08003 * 120.02821 * 179.69772 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0207 -0.6939 1.2018 5 7 2.3995 -1.2294 2.1293 6 8 2.0063 -0.6736 -1.1669 7 6 2.1458 0.0709 -2.2952 8 6 1.7303 1.3944 -2.3103 9 6 1.8737 2.1491 -3.4584 10 6 2.4256 1.5849 -4.5936 11 6 2.5753 2.4088 -5.8466 12 7 3.8801 3.0749 -5.8401 13 6 4.0113 4.3181 -5.2814 14 1 4.9007 4.5676 -4.7218 15 6 3.0013 5.2579 -5.4343 16 7 2.1203 5.1255 -6.4033 17 14 2.8921 6.7106 -4.2648 18 1 4.1411 7.5093 -4.3498 19 1 1.7337 7.5610 -4.6387 20 1 2.7146 6.2157 -2.8761 21 6 5.0445 2.4109 -6.4314 22 6 5.2131 2.8718 -7.8805 23 6 6.4105 2.1883 -8.4889 24 8 7.0618 1.4118 -7.8311 25 8 6.7529 2.4413 -9.7619 26 6 2.8458 0.2677 -4.5794 27 6 2.7046 -0.4913 -3.4338 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.2957 1.8345 -1.4250 32 1 1.5507 3.1796 -3.4706 33 1 2.5031 1.7595 -6.7191 34 1 1.7848 3.1583 -5.8850 35 1 1.4143 5.7820 -6.5098 36 1 5.9375 2.6682 -5.8620 37 1 4.8975 1.3311 -6.4084 38 1 4.3200 2.6144 -8.4499 39 1 5.3602 3.9516 -7.9036 40 1 7.5286 1.9794 -10.1080 41 1 3.2805 -0.1696 -5.4662 42 1 3.0285 -1.5216 -3.4248 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589336096.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:56:44 Heat of formation + Delta-G solvation = -70.821345 kcal Electronic energy + Delta-G solvation = -25925.031997 eV Core-core repulsion = 22063.782227 eV Total energy + Delta-G solvation = -3861.249770 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31706 -41.11455 -39.19400 -37.74712 -37.22412 -36.83757 -33.83465 -33.24755 -32.22693 -31.55885 -30.44315 -27.19358 -26.39481 -25.44122 -23.70675 -23.36394 -22.05215 -21.29183 -19.41445 -19.21785 -19.02233 -18.53434 -17.36607 -16.95997 -16.72883 -16.55156 -16.32116 -16.04025 -15.49910 -15.29564 -15.16794 -14.84299 -14.52222 -14.31970 -14.21464 -14.05881 -13.96049 -13.73723 -13.37686 -13.16994 -13.09421 -13.01371 -12.71542 -12.55290 -12.46336 -12.32211 -12.25305 -11.96319 -11.92042 -11.81037 -11.58321 -11.50245 -11.43871 -10.48507 -9.74942 -8.91432 -8.54473 -7.78672 -5.40820 0.58144 0.64389 1.09701 1.30604 1.51829 1.52365 1.55731 1.60556 2.26670 2.31003 2.57678 2.93303 2.98144 3.32987 3.76328 3.92288 3.95209 4.05519 4.12227 4.23398 4.29908 4.46135 4.50022 4.67997 4.68759 4.72805 4.78447 4.85846 4.94887 4.99668 5.11415 5.23199 5.30139 5.30877 5.46129 5.62262 5.68679 5.70581 5.80786 5.94575 6.09047 6.24930 6.47596 6.55706 7.10880 7.21868 7.86068 8.41170 9.17739 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.011170 B = 0.003669 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2506.026413 B = 7628.647340 C = 9359.871318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.180 3.820 3 H 0.137 0.863 4 C 0.237 3.763 5 N -0.448 5.448 6 O -0.315 6.315 7 C 0.110 3.890 8 C -0.201 4.201 9 C -0.075 4.075 10 C -0.120 4.120 11 C 0.180 3.820 12 N -0.582 5.582 13 C -0.266 4.266 14 H 0.048 0.952 15 C -0.014 4.014 16 N -0.905 5.905 17 Si 0.942 3.058 18 H -0.283 1.283 19 H -0.292 1.292 20 H -0.276 1.276 21 C 0.165 3.835 22 C -0.121 4.121 23 C 0.493 3.507 24 O -0.551 6.551 25 O -0.515 6.515 26 C -0.084 4.084 27 C -0.152 4.152 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.102 0.898 31 H 0.155 0.845 32 H 0.107 0.893 33 H 0.040 0.960 34 H 0.079 0.921 35 H 0.254 0.746 36 H 0.036 0.964 37 H 0.056 0.944 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.423 0.577 41 H 0.130 0.870 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.055 -7.220 2.924 8.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.120 3.880 3 H 0.154 0.846 4 C -0.081 4.081 5 N -0.127 5.127 6 O -0.229 6.229 7 C 0.066 3.934 8 C -0.219 4.219 9 C -0.094 4.094 10 C -0.122 4.122 11 C 0.055 3.945 12 N -0.302 5.302 13 C -0.397 4.397 14 H 0.066 0.934 15 C -0.213 4.213 16 N -0.548 5.548 17 Si 0.771 3.229 18 H -0.209 1.209 19 H -0.218 1.218 20 H -0.202 1.202 21 C 0.039 3.961 22 C -0.162 4.162 23 C 0.337 3.663 24 O -0.443 6.443 25 O -0.329 6.329 26 C -0.103 4.103 27 C -0.171 4.171 28 H 0.110 0.890 29 H 0.094 0.906 30 H 0.121 0.879 31 H 0.172 0.828 32 H 0.125 0.875 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.284 0.716 41 H 0.148 0.852 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.750 -8.107 4.579 9.709 hybrid contribution 0.436 1.058 -0.192 1.160 sum -2.314 -7.049 4.387 8.620 Atomic orbital electron populations 1.22356 0.89490 1.05072 1.05868 1.19763 0.96563 0.95456 0.76183 0.84587 1.28894 0.92173 0.92831 0.94196 1.81232 1.09285 1.08860 1.13283 1.86068 1.82394 1.37488 1.16937 1.18752 0.98177 0.90373 0.86118 1.21377 1.06870 0.93424 1.00211 1.20866 0.97171 0.98836 0.92490 1.20950 0.98198 0.94604 0.98495 1.19873 0.89880 0.93860 0.90865 1.43906 1.04912 1.15872 1.65468 1.19052 1.04824 0.89428 1.26358 0.93435 1.25601 0.99450 0.98727 0.97502 1.70036 1.18131 1.36775 1.29834 0.85756 0.76902 0.80147 0.80105 1.20943 1.21802 1.20152 1.20690 0.90515 0.95640 0.89292 1.22055 0.93236 1.01724 0.99144 1.23832 0.85029 0.78270 0.79191 1.90662 1.54356 1.36340 1.62911 1.84570 1.51355 1.68073 1.28868 1.20952 0.98262 0.93299 0.97775 1.20505 1.03917 1.01345 0.91323 0.88980 0.90645 0.87890 0.82784 0.87460 0.94163 0.90347 0.93646 0.94595 0.92573 0.88212 0.88930 0.71558 0.85244 0.84356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.18 71.98 0.66 -1.32 16 2 C 0.18 2.99 2.67 28.79 0.08 3.07 16 3 H 0.14 1.83 6.18 -2.39 -0.01 1.81 16 4 C 0.24 5.01 15.03 89.44 1.34 6.36 16 5 N -0.45 -11.81 18.54 20.01 0.37 -11.44 16 6 O -0.32 -7.26 9.75 -92.37 -0.90 -8.16 16 7 C 0.11 2.90 6.62 22.51 0.15 3.05 16 8 C -0.20 -5.31 8.33 22.36 0.19 -5.13 16 9 C -0.07 -2.55 9.69 22.25 0.22 -2.33 16 10 C -0.12 -4.34 5.46 -19.85 -0.11 -4.44 16 11 C 0.18 7.50 5.39 85.63 0.46 7.96 16 12 N -0.58 -25.89 2.41 -706.36 -1.70 -27.59 16 13 C -0.27 -13.17 9.47 84.03 0.80 -12.37 16 14 H 0.05 2.44 7.90 -2.91 -0.02 2.42 16 15 C -0.01 -0.69 4.99 84.86 0.42 -0.26 16 16 N -0.91 -46.62 11.40 21.65 0.25 -46.37 16 17 Si 0.94 40.44 29.60 68.60 2.03 42.47 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 20 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 21 C 0.17 6.52 4.96 86.38 0.43 6.95 16 22 C -0.12 -4.29 6.11 29.85 0.18 -4.11 16 23 C 0.49 15.53 8.33 71.24 0.59 16.12 16 24 O -0.55 -19.96 16.74 21.96 0.37 -19.59 16 25 O -0.52 -12.61 13.42 -51.44 -0.69 -13.30 16 26 C -0.08 -2.63 9.69 22.25 0.22 -2.42 16 27 C -0.15 -4.25 9.99 22.37 0.22 -4.03 16 28 H 0.09 1.07 7.13 -2.39 -0.02 1.05 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 30 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.15 2.95 5.51 -2.91 -0.02 2.93 16 32 H 0.11 4.01 8.06 -2.91 -0.02 3.98 16 33 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 34 H 0.08 3.73 5.42 -2.38 -0.01 3.72 16 35 H 0.25 12.82 8.31 -92.71 -0.77 12.05 16 36 H 0.04 1.50 8.03 -2.39 -0.02 1.48 16 37 H 0.06 2.09 7.99 -2.39 -0.02 2.07 16 38 H 0.10 3.48 8.14 -2.38 -0.02 3.46 16 39 H 0.09 3.58 8.14 -2.38 -0.02 3.56 16 40 H 0.42 6.00 9.10 -74.06 -0.67 5.32 16 41 H 0.13 3.72 8.05 -2.91 -0.02 3.70 16 42 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 Total: -1.00 -62.94 369.44 5.95 -56.98 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 0.39 Total: 19.90 kcal Atomic # 6 Polarization: 1.25 SS G_CDS: 5.85 Total: 7.10 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.09 Total: -85.40 kcal Atomic # 8 Polarization: -39.83 SS G_CDS: -1.22 Total: -41.05 kcal Atomic # 14 Polarization: 40.44 SS G_CDS: 2.03 Total: 42.47 kcal Total: -62.94 5.95 -56.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589336096.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.841 kcal (2) G-P(sol) polarization free energy of solvation -62.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds