Wall clock time and date at job start Tue Mar 31 2020 12:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.78837 * 2 1 4 4 C 1.53239 * 109.62436 * 239.51296 * 2 1 3 5 5 N 1.46899 * 109.36127 * 186.47586 * 4 2 1 6 6 C 1.39014 * 111.01823 * 187.23362 * 5 4 2 7 7 C 1.39238 * 119.92436 * 111.45567 * 6 5 4 8 8 C 1.37116 * 120.06864 * 179.71726 * 7 6 5 9 9 C 1.39857 * 119.92616 * 0.52646 * 8 7 6 10 10 C 1.47375 * 120.07210 * 179.76538 * 9 8 7 11 11 O 1.21522 * 119.99845 * 179.97438 * 10 9 8 12 12 O 1.34755 * 120.00301 * 359.97438 * 10 9 8 13 13 C 1.39854 * 119.85263 * 359.74487 * 9 8 7 14 14 C 1.37113 * 119.92548 * 0.02562 * 13 9 8 15 15 C 1.46901 * 111.27280 * 63.06344 * 5 4 2 16 16 C 1.53235 * 109.35975 * 296.93966 * 15 5 4 17 17 N 1.47074 * 109.62741 * 120.48694 * 2 1 3 18 18 C 1.34779 * 120.88747 * 350.91572 * 17 2 1 19 19 O 1.21691 * 119.99268 * 354.44253 * 18 17 2 20 20 C 1.46364 * 120.00570 * 174.44304 * 18 17 2 21 21 H 1.08003 * 120.00327 * 5.44849 * 20 18 17 22 22 C 1.40048 * 119.99993 * 185.44127 * 20 18 17 23 23 N 1.30664 * 120.00499 * 0.02562 * 22 20 18 24 24 Si 1.86805 * 119.99922 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47178 * 90.00344 * 24 22 20 26 26 H 1.48500 * 109.47182 * 210.00262 * 24 22 20 27 27 H 1.48500 * 109.47361 * 330.00741 * 24 22 20 28 28 H 1.09004 * 109.46540 * 307.88313 * 1 2 3 29 29 H 1.09003 * 109.46986 * 67.87824 * 1 2 3 30 30 H 1.08994 * 109.47261 * 187.88189 * 1 2 3 31 31 H 1.08994 * 109.49960 * 306.42127 * 4 2 1 32 32 H 1.09004 * 109.49445 * 66.50779 * 4 2 1 33 33 H 1.07991 * 119.96872 * 359.97311 * 7 6 5 34 34 H 1.07993 * 120.03544 * 180.29342 * 8 7 6 35 35 H 0.96704 * 117.00196 * 179.97438 * 12 10 9 36 36 H 1.07995 * 120.03700 * 179.97438 * 13 9 8 37 37 H 1.07999 * 119.96475 * 180.02562 * 14 13 9 38 38 H 1.09000 * 109.49146 * 176.96329 * 15 5 4 39 39 H 1.09004 * 109.48698 * 56.91012 * 15 5 4 40 40 H 1.09004 * 109.62601 * 173.52742 * 16 15 5 41 41 H 1.09003 * 109.63191 * 294.10499 * 16 15 5 42 42 H 0.96994 * 120.00671 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0447 -0.7323 -1.2438 5 7 3.5053 -0.8651 -1.1613 6 6 4.0269 -1.3783 -2.3432 7 6 4.8115 -0.5722 -3.1639 8 6 5.3323 -1.0771 -4.3275 9 6 5.0655 -2.3999 -4.6952 10 6 5.6193 -2.9442 -5.9477 11 8 5.3871 -4.0939 -6.2657 12 8 6.3833 -2.1672 -6.7405 13 6 4.2724 -3.2049 -3.8713 14 6 3.7586 -2.6953 -2.7067 15 6 3.9016 -1.6873 -0.0102 16 6 3.4629 -0.9941 1.2841 17 7 2.0241 -0.7028 1.1938 18 6 1.1807 -1.0707 2.1786 19 8 0.0120 -0.7343 2.1360 20 6 1.6704 -1.8747 3.2993 21 1 2.7235 -2.0991 3.3835 22 6 0.7734 -2.3531 4.2626 23 7 -0.5007 -2.0820 4.1607 24 14 1.3984 -3.3798 5.6926 25 1 1.7525 -2.4873 6.8254 26 1 0.3388 -4.3277 6.1217 27 1 2.6007 -4.1407 5.2675 28 1 -0.3632 0.6311 0.8112 29 1 -0.3633 0.3870 -0.9520 30 1 -0.3633 -1.0179 0.1409 31 1 1.5923 -1.7225 -1.2962 32 1 1.7811 -0.1638 -2.1358 33 1 5.0136 0.4504 -2.8816 34 1 5.9447 -0.4529 -4.9612 35 1 6.7244 -2.5685 -7.5515 36 1 4.0641 -4.2266 -4.1526 37 1 3.1464 -3.3165 -2.0699 38 1 4.9845 -1.8114 -0.0074 39 1 3.4235 -2.6644 -0.0795 40 1 3.6509 -1.6513 2.1332 41 1 4.0177 -0.0640 1.4076 42 1 -1.1220 -2.4136 4.8277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594562139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:02 Heat of formation + Delta-G solvation = -67.634959 kcal Electronic energy + Delta-G solvation = -26491.949649 eV Core-core repulsion = 22630.838051 eV Total energy + Delta-G solvation = -3861.111598 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.78955 -39.94871 -38.42902 -36.54464 -36.28895 -33.74837 -32.74590 -31.92959 -31.35150 -30.22260 -27.61668 -26.01172 -25.71196 -23.64254 -23.12197 -22.00562 -21.27099 -20.63663 -18.77572 -18.35656 -17.79939 -16.87390 -16.23439 -15.88819 -15.51570 -15.38355 -15.01307 -14.91687 -14.76198 -14.30870 -13.94041 -13.80826 -13.72824 -13.21068 -12.77126 -12.70360 -12.58606 -12.04055 -11.85411 -11.66219 -11.46597 -11.39923 -11.26334 -11.13375 -10.98504 -10.95006 -10.85740 -10.61877 -10.45513 -10.26450 -9.99688 -9.28817 -8.97086 -8.90627 -8.49004 -7.28185 -7.19898 -6.19913 -4.70008 0.38990 1.17788 2.27132 2.74225 3.09717 3.17303 3.19411 3.52135 3.74528 4.03836 4.45347 4.50770 4.57208 4.70627 4.89128 5.05303 5.14714 5.27248 5.35598 5.43764 5.53289 5.61725 5.73115 5.75290 5.79444 5.86833 5.93595 6.06004 6.08599 6.15572 6.18763 6.29195 6.30707 6.46091 6.49389 6.52767 6.97852 6.99419 7.31227 7.36131 7.39999 7.57604 7.59764 8.09260 8.29970 8.97330 9.38640 10.52372 10.71148 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002877 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.899937 B = 9731.616296 C =10278.727801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.158 3.842 3 H 0.055 0.945 4 C 0.053 3.947 5 N -0.510 5.510 6 C 0.145 3.855 7 C -0.115 4.115 8 C -0.053 4.053 9 C -0.147 4.147 10 C 0.530 3.470 11 O -0.518 6.518 12 O -0.513 6.513 13 C -0.040 4.040 14 C -0.164 4.164 15 C 0.044 3.956 16 C 0.127 3.873 17 N -0.642 5.642 18 C 0.560 3.440 19 O -0.567 6.567 20 C -0.546 4.546 21 H 0.071 0.929 22 C 0.089 3.911 23 N -0.767 5.767 24 Si 0.904 3.096 25 H -0.272 1.272 26 H -0.280 1.280 27 H -0.265 1.265 28 H 0.083 0.917 29 H 0.020 0.980 30 H 0.065 0.935 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.413 0.587 36 H 0.135 0.865 37 H 0.132 0.868 38 H 0.078 0.922 39 H 0.044 0.956 40 H 0.100 0.900 41 H 0.051 0.949 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.505 1.049 -15.743 20.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.053 3.947 3 H 0.073 0.927 4 C -0.073 4.073 5 N -0.232 5.232 6 C 0.051 3.949 7 C -0.134 4.134 8 C -0.072 4.072 9 C -0.148 4.148 10 C 0.375 3.625 11 O -0.408 6.408 12 O -0.325 6.325 13 C -0.059 4.059 14 C -0.184 4.184 15 C -0.083 4.083 16 C 0.002 3.998 17 N -0.381 5.381 18 C 0.366 3.634 19 O -0.449 6.449 20 C -0.582 4.582 21 H 0.089 0.911 22 C -0.131 4.131 23 N -0.396 5.396 24 Si 0.729 3.271 25 H -0.197 1.197 26 H -0.205 1.205 27 H -0.189 1.189 28 H 0.101 0.899 29 H 0.038 0.962 30 H 0.084 0.916 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.271 0.729 36 H 0.153 0.847 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.063 0.937 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 11.602 1.558 -15.296 19.262 hybrid contribution 0.408 -1.693 -0.032 1.742 sum 12.010 -0.135 -15.328 19.473 Atomic orbital electron populations 1.22055 0.92690 1.04375 0.99020 1.20906 0.95247 0.94430 0.84100 0.92700 1.22730 0.84301 1.00446 0.99839 1.59510 1.12182 1.50726 1.00761 1.19312 0.93339 0.91214 0.91067 1.20982 0.97734 1.00834 0.93825 1.21261 0.96518 0.93602 0.95784 1.19013 1.05377 0.95982 0.94433 1.20880 0.74987 0.83120 0.83539 1.90901 1.57689 1.18922 1.73336 1.84573 1.63333 1.47623 1.36979 1.20991 0.92935 0.99605 0.92383 1.21679 1.02085 0.97008 0.97677 1.22693 1.00150 0.94967 0.90492 1.21519 0.83236 0.99327 0.95684 1.48346 1.06759 1.62655 1.20366 1.18168 0.84536 0.79553 0.81118 1.90616 1.17588 1.58625 1.78106 1.20991 0.94771 1.34310 1.08161 0.91091 1.25694 0.94387 0.94979 0.98013 1.69989 1.02507 1.35417 1.31650 0.86424 0.79236 0.79908 0.81526 1.19699 1.20493 1.18923 0.89857 0.96170 0.91623 0.93928 0.90579 0.84301 0.84295 0.72864 0.84673 0.84995 0.90409 0.93746 0.88233 0.93042 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.52 7.63 37.16 0.28 -2.24 16 2 C 0.16 2.99 3.65 -67.49 -0.25 2.74 16 3 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.05 0.84 4.64 -3.70 -0.02 0.82 16 5 N -0.51 -7.26 4.57 -170.82 -0.78 -8.04 16 6 C 0.15 1.81 4.65 -83.86 -0.39 1.42 16 7 C -0.11 -1.21 9.93 -39.62 -0.39 -1.60 16 8 C -0.05 -0.50 9.58 -39.38 -0.38 -0.88 16 9 C -0.15 -1.59 5.88 -104.97 -0.62 -2.21 16 10 C 0.53 5.63 8.26 34.45 0.28 5.92 16 11 O -0.52 -6.96 17.12 -19.28 -0.33 -7.29 16 12 O -0.51 -3.75 12.67 -40.64 -0.51 -4.27 16 13 C -0.04 -0.46 9.56 -39.39 -0.38 -0.84 16 14 C -0.16 -1.99 8.70 -39.62 -0.34 -2.33 16 15 C 0.04 0.65 5.18 -3.70 -0.02 0.63 16 16 C 0.13 2.25 6.52 -3.60 -0.02 2.22 16 17 N -0.64 -13.86 3.01 -166.58 -0.50 -14.36 16 18 C 0.56 15.00 7.40 -12.99 -0.10 14.91 16 19 O -0.57 -16.88 10.75 5.20 0.06 -16.82 16 20 C -0.55 -14.57 8.88 -35.64 -0.32 -14.88 16 21 H 0.07 1.73 5.68 -52.48 -0.30 1.43 16 22 C 0.09 2.38 5.50 -17.37 -0.10 2.29 16 23 N -0.77 -22.09 11.84 55.55 0.66 -21.43 16 24 Si 0.90 19.44 29.56 -169.99 -5.02 14.42 16 25 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 26 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 28 H 0.08 1.94 6.61 -51.93 -0.34 1.59 16 29 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 1.53 6.95 -51.93 -0.36 1.17 16 31 H 0.04 0.72 7.82 -51.93 -0.41 0.31 16 32 H 0.08 1.07 8.09 -51.93 -0.42 0.65 16 33 H 0.14 1.31 8.06 -52.49 -0.42 0.88 16 34 H 0.14 1.04 7.60 -52.49 -0.40 0.64 16 35 H 0.41 1.17 9.11 45.56 0.42 1.59 16 36 H 0.14 1.48 7.64 -52.49 -0.40 1.08 16 37 H 0.13 1.63 7.14 -52.49 -0.37 1.25 16 38 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 39 H 0.04 0.70 7.18 -51.93 -0.37 0.33 16 40 H 0.10 1.82 5.37 -51.93 -0.28 1.55 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 42 H 0.27 7.07 8.29 -40.82 -0.34 6.73 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -33.44 344.86 -8.47 -41.92 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: -4.48 Total: 4.72 kcal Atomic # 6 Polarization: 8.71 SS G_CDS: -2.75 Total: 5.96 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: -0.62 Total: -43.83 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.79 Total: -28.38 kcal Atomic # 14 Polarization: 19.44 SS G_CDS: -5.02 Total: 14.42 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.44 -8.47 -41.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594562139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.720 kcal (2) G-P(sol) polarization free energy of solvation -33.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.915 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds