Wall clock time and date at job start Tue Mar 31 2020 12:30:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.78837 * 2 1 4 4 C 1.53239 * 109.62436 * 239.51296 * 2 1 3 5 5 N 1.46899 * 109.36127 * 186.47586 * 4 2 1 6 6 C 1.39014 * 111.01823 * 187.23362 * 5 4 2 7 7 C 1.39238 * 119.92436 * 111.45567 * 6 5 4 8 8 C 1.37116 * 120.06864 * 179.71726 * 7 6 5 9 9 C 1.39857 * 119.92616 * 0.52646 * 8 7 6 10 10 C 1.47375 * 120.07210 * 179.76538 * 9 8 7 11 11 O 1.21522 * 119.99845 * 179.97438 * 10 9 8 12 12 O 1.34755 * 120.00301 * 359.97438 * 10 9 8 13 13 C 1.39854 * 119.85263 * 359.74487 * 9 8 7 14 14 C 1.37113 * 119.92548 * 0.02562 * 13 9 8 15 15 C 1.46901 * 111.27280 * 63.06344 * 5 4 2 16 16 C 1.53235 * 109.35975 * 296.93966 * 15 5 4 17 17 N 1.47074 * 109.62741 * 120.48694 * 2 1 3 18 18 C 1.34779 * 120.88747 * 350.91572 * 17 2 1 19 19 O 1.21691 * 119.99268 * 354.44253 * 18 17 2 20 20 C 1.46364 * 120.00570 * 174.44304 * 18 17 2 21 21 H 1.08003 * 120.00327 * 5.44849 * 20 18 17 22 22 C 1.40048 * 119.99993 * 185.44127 * 20 18 17 23 23 N 1.30664 * 120.00499 * 0.02562 * 22 20 18 24 24 Si 1.86805 * 119.99922 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47178 * 90.00344 * 24 22 20 26 26 H 1.48500 * 109.47182 * 210.00262 * 24 22 20 27 27 H 1.48500 * 109.47361 * 330.00741 * 24 22 20 28 28 H 1.09004 * 109.46540 * 307.88313 * 1 2 3 29 29 H 1.09003 * 109.46986 * 67.87824 * 1 2 3 30 30 H 1.08994 * 109.47261 * 187.88189 * 1 2 3 31 31 H 1.08994 * 109.49960 * 306.42127 * 4 2 1 32 32 H 1.09004 * 109.49445 * 66.50779 * 4 2 1 33 33 H 1.07991 * 119.96872 * 359.97311 * 7 6 5 34 34 H 1.07993 * 120.03544 * 180.29342 * 8 7 6 35 35 H 0.96704 * 117.00196 * 179.97438 * 12 10 9 36 36 H 1.07995 * 120.03700 * 179.97438 * 13 9 8 37 37 H 1.07999 * 119.96475 * 180.02562 * 14 13 9 38 38 H 1.09000 * 109.49146 * 176.96329 * 15 5 4 39 39 H 1.09004 * 109.48698 * 56.91012 * 15 5 4 40 40 H 1.09004 * 109.62601 * 173.52742 * 16 15 5 41 41 H 1.09003 * 109.63191 * 294.10499 * 16 15 5 42 42 H 0.96994 * 120.00671 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0447 -0.7323 -1.2438 5 7 3.5053 -0.8651 -1.1613 6 6 4.0269 -1.3783 -2.3432 7 6 4.8115 -0.5722 -3.1639 8 6 5.3323 -1.0771 -4.3275 9 6 5.0655 -2.3999 -4.6952 10 6 5.6193 -2.9442 -5.9477 11 8 5.3871 -4.0939 -6.2657 12 8 6.3833 -2.1672 -6.7405 13 6 4.2724 -3.2049 -3.8713 14 6 3.7586 -2.6953 -2.7067 15 6 3.9016 -1.6873 -0.0102 16 6 3.4629 -0.9941 1.2841 17 7 2.0241 -0.7028 1.1938 18 6 1.1807 -1.0707 2.1786 19 8 0.0120 -0.7343 2.1360 20 6 1.6704 -1.8747 3.2993 21 1 2.7235 -2.0991 3.3835 22 6 0.7734 -2.3531 4.2626 23 7 -0.5007 -2.0820 4.1607 24 14 1.3984 -3.3798 5.6926 25 1 1.7525 -2.4873 6.8254 26 1 0.3388 -4.3277 6.1217 27 1 2.6007 -4.1407 5.2675 28 1 -0.3632 0.6311 0.8112 29 1 -0.3633 0.3870 -0.9520 30 1 -0.3633 -1.0179 0.1409 31 1 1.5923 -1.7225 -1.2962 32 1 1.7811 -0.1638 -2.1358 33 1 5.0136 0.4504 -2.8816 34 1 5.9447 -0.4529 -4.9612 35 1 6.7244 -2.5685 -7.5515 36 1 4.0641 -4.2266 -4.1526 37 1 3.1464 -3.3165 -2.0699 38 1 4.9845 -1.8114 -0.0074 39 1 3.4235 -2.6644 -0.0795 40 1 3.6509 -1.6513 2.1332 41 1 4.0177 -0.0640 1.4076 42 1 -1.1220 -2.4136 4.8277 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594562139.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:02 Heat of formation + Delta-G solvation = -90.903359 kcal Electronic energy + Delta-G solvation = -26492.958642 eV Core-core repulsion = 22630.838051 eV Total energy + Delta-G solvation = -3862.120591 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70872 -41.03002 -39.81184 -37.93299 -37.08959 -35.34846 -34.63137 -33.56512 -32.19215 -31.30571 -29.14767 -27.93905 -26.98488 -24.68709 -24.04376 -23.49557 -22.55897 -21.71485 -20.43102 -19.16742 -18.66981 -18.35424 -17.77837 -17.19900 -16.68331 -16.53360 -16.34408 -16.29237 -15.87846 -15.65177 -15.58550 -14.79682 -14.59324 -14.51263 -14.39225 -13.69404 -13.64150 -13.55178 -13.31630 -13.10638 -12.96581 -12.83133 -12.67312 -12.58751 -12.46712 -12.26894 -12.12969 -12.05870 -11.91695 -11.78081 -11.71263 -10.90423 -10.11310 -9.92718 -9.65117 -9.28351 -8.96711 -8.20318 -6.79176 -0.47521 0.34662 1.40506 1.41020 1.43968 1.55324 2.05571 2.23531 2.49552 2.57976 2.68011 2.89292 3.63668 3.74451 3.87915 3.92589 4.00865 4.13451 4.21086 4.22334 4.30067 4.35276 4.46146 4.50879 4.56531 4.69571 4.72167 4.83400 4.89969 4.97765 5.05162 5.13389 5.25305 5.32858 5.39819 5.41340 5.56469 5.58794 5.64251 5.72873 5.80922 6.18544 6.29775 6.46704 6.92494 6.95357 7.48112 8.53168 8.72144 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.022595 B = 0.002877 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.899937 B = 9731.616296 C =10278.727801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C 0.154 3.846 3 H 0.067 0.933 4 C 0.066 3.934 5 N -0.503 5.503 6 C 0.127 3.873 7 C -0.106 4.106 8 C -0.039 4.039 9 C -0.151 4.151 10 C 0.536 3.464 11 O -0.553 6.553 12 O -0.501 6.501 13 C -0.047 4.047 14 C -0.168 4.168 15 C 0.053 3.947 16 C 0.124 3.876 17 N -0.646 5.646 18 C 0.543 3.457 19 O -0.610 6.610 20 C -0.570 4.570 21 H 0.090 0.910 22 C 0.033 3.967 23 N -0.821 5.821 24 Si 0.988 3.012 25 H -0.264 1.264 26 H -0.277 1.277 27 H -0.248 1.248 28 H 0.046 0.954 29 H 0.058 0.942 30 H 0.026 0.974 31 H 0.025 0.975 32 H 0.100 0.900 33 H 0.157 0.843 34 H 0.167 0.833 35 H 0.434 0.566 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.030 0.970 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.590 1.480 -17.209 23.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.050 3.950 3 H 0.085 0.915 4 C -0.061 4.061 5 N -0.224 5.224 6 C 0.033 3.967 7 C -0.124 4.124 8 C -0.057 4.057 9 C -0.152 4.152 10 C 0.383 3.617 11 O -0.446 6.446 12 O -0.314 6.314 13 C -0.066 4.066 14 C -0.189 4.189 15 C -0.074 4.074 16 C 0.000 4.000 17 N -0.384 5.384 18 C 0.349 3.651 19 O -0.496 6.496 20 C -0.607 4.607 21 H 0.108 0.892 22 C -0.182 4.182 23 N -0.451 5.451 24 Si 0.808 3.192 25 H -0.188 1.188 26 H -0.202 1.202 27 H -0.171 1.171 28 H 0.065 0.935 29 H 0.077 0.923 30 H 0.045 0.955 31 H 0.043 0.957 32 H 0.119 0.881 33 H 0.174 0.826 34 H 0.185 0.815 35 H 0.296 0.704 36 H 0.150 0.850 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.049 0.951 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.763 2.011 -16.825 22.474 hybrid contribution -0.485 -1.746 0.257 1.831 sum 14.278 0.264 -16.568 21.873 Atomic orbital electron populations 1.21760 0.94194 1.01240 0.99527 1.21041 0.94127 0.95280 0.84554 0.91515 1.22504 0.85520 0.99336 0.98702 1.59465 1.10878 1.50596 1.01428 1.19338 0.94819 0.91629 0.90927 1.21143 0.96621 1.01262 0.93410 1.21504 0.95730 0.93016 0.95443 1.19178 1.04999 0.96563 0.94493 1.20808 0.74727 0.82631 0.83583 1.90898 1.59090 1.20435 1.74158 1.84516 1.62285 1.46900 1.37735 1.20993 0.93393 0.99811 0.92429 1.21570 1.02346 0.97028 0.97908 1.22568 1.01559 0.93854 0.89415 1.21673 0.80944 1.00168 0.97167 1.48222 1.08030 1.62038 1.20116 1.18509 0.84597 0.79662 0.82339 1.90597 1.19518 1.60102 1.79409 1.21517 0.95965 1.34518 1.08681 0.89171 1.26862 0.94299 0.95966 1.01119 1.70164 1.04356 1.37352 1.33254 0.85152 0.78957 0.77916 0.77139 1.18829 1.20215 1.17147 0.93487 0.92322 0.95492 0.95677 0.88130 0.82558 0.81516 0.70408 0.84952 0.86146 0.87578 0.95136 0.89214 0.91494 0.91831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 7.63 71.98 0.55 -4.08 16 2 C 0.15 5.82 3.65 44.96 0.16 5.98 16 3 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 4 C 0.07 2.00 4.64 86.38 0.40 2.40 16 5 N -0.50 -13.23 4.57 -694.36 -3.17 -16.40 16 6 C 0.13 2.85 4.65 38.48 0.18 3.03 16 7 C -0.11 -1.82 9.93 22.25 0.22 -1.60 16 8 C -0.04 -0.58 9.58 22.40 0.21 -0.37 16 9 C -0.15 -2.88 5.88 -20.09 -0.12 -3.00 16 10 C 0.54 10.09 8.26 70.23 0.58 10.67 16 11 O -0.55 -14.10 17.12 19.77 0.34 -13.76 16 12 O -0.50 -5.53 12.67 -56.66 -0.72 -6.25 16 13 C -0.05 -1.02 9.56 22.40 0.21 -0.81 16 14 C -0.17 -3.88 8.70 22.25 0.19 -3.69 16 15 C 0.05 1.50 5.18 86.38 0.45 1.95 16 16 C 0.12 4.29 6.52 86.35 0.56 4.85 16 17 N -0.65 -28.42 3.01 -799.14 -2.40 -30.82 16 18 C 0.54 30.35 7.40 86.36 0.64 30.99 16 19 O -0.61 -38.56 10.75 -4.32 -0.05 -38.61 16 20 C -0.57 -31.20 8.88 24.83 0.22 -30.98 16 21 H 0.09 4.40 5.68 -2.91 -0.02 4.39 16 22 C 0.03 1.78 5.50 85.31 0.47 2.24 16 23 N -0.82 -49.38 11.84 21.83 0.26 -49.13 16 24 Si 0.99 40.30 29.56 68.60 2.03 42.33 16 25 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 26 H -0.28 -11.07 7.11 99.48 0.71 -10.36 16 27 H -0.25 -9.34 7.11 99.48 0.71 -8.64 16 28 H 0.05 2.30 6.61 -2.39 -0.02 2.29 16 29 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.03 1.31 6.95 -2.39 -0.02 1.29 16 31 H 0.02 0.85 7.82 -2.39 -0.02 0.83 16 32 H 0.10 2.57 8.09 -2.38 -0.02 2.55 16 33 H 0.16 2.20 8.06 -2.92 -0.02 2.17 16 34 H 0.17 1.62 7.60 -2.91 -0.02 1.60 16 35 H 0.43 0.97 9.11 -74.05 -0.67 0.30 16 36 H 0.13 2.87 7.64 -2.91 -0.02 2.85 16 37 H 0.12 3.00 7.14 -2.91 -0.02 2.98 16 38 H 0.11 2.42 8.09 -2.39 -0.02 2.40 16 39 H 0.03 0.95 7.18 -2.39 -0.02 0.93 16 40 H 0.09 3.25 5.37 -2.39 -0.01 3.24 16 41 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.27 14.94 8.29 -92.71 -0.77 14.17 16 Total: -1.00 -76.88 344.86 1.61 -75.27 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.39 Total: 19.79 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 4.94 Total: 17.59 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -5.32 Total: -96.35 kcal Atomic # 8 Polarization: -58.19 SS G_CDS: -0.43 Total: -58.62 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -76.88 1.61 -75.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594562139.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.637 kcal (2) G-P(sol) polarization free energy of solvation -76.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds