Wall clock time and date at job start Tue Mar 31 2020 12:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.62811 * 2 1 4 4 C 1.53242 * 109.62895 * 120.38760 * 2 1 3 5 5 N 1.46897 * 109.34137 * 173.53777 * 4 2 1 6 6 C 1.39003 * 111.00019 * 172.74604 * 5 4 2 7 7 C 1.39240 * 119.92504 * 179.97438 * 6 5 4 8 8 C 1.37112 * 120.07705 * 180.25448 * 7 6 5 9 9 C 1.39865 * 119.92046 * 359.52257 * 8 7 6 10 10 C 1.47375 * 120.07429 * 180.25663 * 9 8 7 11 11 O 1.21517 * 120.00464 * 180.20470 * 10 9 8 12 12 O 1.34770 * 119.99852 * 0.20077 * 10 9 8 13 13 C 1.39857 * 119.85402 * 0.45395 * 9 8 7 14 14 C 1.37115 * 119.92482 * 359.77490 * 13 9 8 15 15 C 1.46901 * 111.26858 * 296.89612 * 5 4 2 16 16 C 1.53246 * 109.33850 * 63.10335 * 15 5 4 17 17 N 1.47076 * 108.52211 * 306.17142 * 16 15 5 18 18 C 1.34781 * 120.87944 * 231.16736 * 17 16 15 19 19 O 1.21687 * 119.99997 * 185.71094 * 18 17 16 20 20 C 1.46377 * 119.99932 * 5.70034 * 18 17 16 21 21 H 1.08002 * 119.99785 * 8.47184 * 20 18 17 22 22 C 1.40045 * 119.99821 * 188.46269 * 20 18 17 23 23 N 1.30667 * 120.00347 * 0.02562 * 22 20 18 24 24 Si 1.86803 * 119.99750 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47276 * 60.00323 * 24 22 20 26 26 H 1.48499 * 109.47049 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47338 * 300.00313 * 24 22 20 28 28 H 1.09004 * 109.47105 * 291.59926 * 1 2 3 29 29 H 1.09000 * 109.47218 * 51.59437 * 1 2 3 30 30 H 1.09001 * 109.47372 * 171.59332 * 1 2 3 31 31 H 1.09003 * 109.49096 * 53.57538 * 4 2 1 32 32 H 1.08996 * 109.49156 * 293.50253 * 4 2 1 33 33 H 1.08003 * 119.96614 * 359.97438 * 7 6 5 34 34 H 1.07998 * 120.04035 * 179.74827 * 8 7 6 35 35 H 0.96699 * 116.99498 * 180.02562 * 12 10 9 36 36 H 1.07994 * 120.03999 * 179.79689 * 13 9 8 37 37 H 1.08001 * 119.96525 * 179.97438 * 14 13 9 38 38 H 1.08998 * 109.48978 * 183.06162 * 15 5 4 39 39 H 1.08997 * 109.49260 * 303.14424 * 15 5 4 40 40 H 1.08999 * 109.62753 * 186.45520 * 16 15 5 41 41 H 1.09001 * 109.78530 * 65.97642 * 16 15 5 42 42 H 0.96998 * 120.00483 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7301 1.2451 5 7 3.5054 -0.8625 1.1624 6 6 4.0271 -1.3731 2.3453 7 6 5.3992 -1.5750 2.4692 8 6 5.9166 -2.0834 3.6327 9 6 5.0655 -2.3899 4.6994 10 6 5.6186 -2.9312 5.9536 11 8 4.8776 -3.2005 6.8783 12 8 6.9464 -3.1276 6.0750 13 6 3.6879 -2.1854 4.5718 14 6 3.1765 -1.6811 3.4038 15 6 3.9015 -1.6872 0.0130 16 6 3.4628 -0.9962 -1.2826 17 7 2.0240 -0.7048 -1.1926 18 6 1.1807 -1.0736 -2.1772 19 8 0.0127 -0.7344 -2.1367 20 6 1.6697 -1.8819 -3.2952 21 1 2.6661 -2.2976 -3.2658 22 6 0.8455 -2.1163 -4.4030 23 7 -0.3598 -1.6131 -4.4387 24 14 1.4694 -3.1485 -5.8295 25 1 1.8125 -4.5090 -5.3433 26 1 0.4137 -3.2454 -6.8692 27 1 2.6784 -2.5110 -6.4102 28 1 -0.3633 0.3783 0.9555 29 1 -0.3633 0.6384 -0.8053 30 1 -0.3634 -1.0166 -0.1502 31 1 1.5923 -1.7203 1.2991 32 1 1.7810 -0.1602 2.1359 33 1 6.0563 -1.3352 1.6463 34 1 6.9805 -2.2436 3.7267 35 1 7.2621 -3.4849 6.9163 36 1 3.0276 -2.4240 5.3923 37 1 2.1127 -1.5233 3.3043 38 1 4.9844 -1.8112 0.0104 39 1 3.4232 -2.6640 0.0842 40 1 3.6508 -1.6548 -2.1305 41 1 4.0174 -0.0666 -1.4110 42 1 -0.9305 -1.7751 -5.2061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594562141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:07 Heat of formation + Delta-G solvation = -67.287109 kcal Electronic energy + Delta-G solvation = -26491.210313 eV Core-core repulsion = 22630.113799 eV Total energy + Delta-G solvation = -3861.096514 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.80415 -40.02634 -38.42224 -36.57572 -36.21714 -33.81512 -32.89099 -32.19502 -31.19991 -30.15956 -27.73663 -26.06166 -25.92851 -23.96784 -22.74539 -21.93060 -21.31632 -20.59976 -18.84711 -18.25372 -17.86234 -16.86042 -16.34900 -15.79452 -15.75729 -15.49222 -15.07890 -14.87162 -14.47296 -14.18419 -14.05967 -13.91975 -13.69897 -13.56517 -12.72599 -12.69633 -12.56163 -12.07176 -11.81404 -11.71207 -11.58197 -11.35137 -11.29443 -11.05113 -10.96891 -10.90847 -10.82240 -10.73825 -10.48902 -10.32276 -10.07865 -9.85975 -9.25300 -8.92544 -7.99117 -7.34001 -7.26965 -6.23613 -4.73395 0.54639 1.23994 2.36054 2.85347 3.09285 3.15271 3.16139 3.48895 3.77583 4.00369 4.36552 4.47396 4.57240 4.73755 4.91780 5.02188 5.14408 5.21398 5.24498 5.42848 5.44426 5.52333 5.61700 5.64557 5.76697 5.83631 5.87848 6.00313 6.09925 6.17525 6.18882 6.23535 6.27744 6.39711 6.41811 6.49650 6.91816 6.93276 7.15031 7.27123 7.36284 7.50883 7.69545 8.03556 8.24571 8.93943 9.32710 10.48483 10.66705 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.002862 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.229463 B = 9781.256539 C =10438.497643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.156 3.844 3 H 0.056 0.944 4 C 0.039 3.961 5 N -0.487 5.487 6 C 0.169 3.831 7 C -0.164 4.164 8 C -0.031 4.031 9 C -0.177 4.177 10 C 0.531 3.469 11 O -0.524 6.524 12 O -0.515 6.515 13 C -0.019 4.019 14 C -0.192 4.192 15 C 0.044 3.956 16 C 0.124 3.876 17 N -0.642 5.642 18 C 0.561 3.439 19 O -0.565 6.565 20 C -0.547 4.547 21 H 0.071 0.929 22 C 0.090 3.910 23 N -0.768 5.768 24 Si 0.905 3.095 25 H -0.268 1.268 26 H -0.280 1.280 27 H -0.268 1.268 28 H 0.021 0.979 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.137 0.863 35 H 0.411 0.589 36 H 0.135 0.865 37 H 0.139 0.861 38 H 0.085 0.915 39 H 0.052 0.948 40 H 0.103 0.897 41 H 0.053 0.947 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.869 -1.271 13.974 19.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.051 3.949 3 H 0.074 0.926 4 C -0.089 4.089 5 N -0.199 5.199 6 C 0.067 3.933 7 C -0.185 4.185 8 C -0.050 4.050 9 C -0.180 4.180 10 C 0.377 3.623 11 O -0.415 6.415 12 O -0.327 6.327 13 C -0.038 4.038 14 C -0.213 4.213 15 C -0.081 4.081 16 C -0.001 4.001 17 N -0.382 5.382 18 C 0.367 3.633 19 O -0.448 6.448 20 C -0.583 4.583 21 H 0.089 0.911 22 C -0.131 4.131 23 N -0.396 5.396 24 Si 0.730 3.270 25 H -0.193 1.193 26 H -0.205 1.205 27 H -0.192 1.192 28 H 0.040 0.960 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.102 0.898 33 H 0.153 0.847 34 H 0.155 0.845 35 H 0.269 0.731 36 H 0.153 0.847 37 H 0.156 0.844 38 H 0.104 0.896 39 H 0.071 0.929 40 H 0.121 0.879 41 H 0.071 0.929 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.822 -0.476 13.545 17.984 hybrid contribution 0.447 -1.359 0.098 1.434 sum 12.269 -1.835 13.643 18.440 Atomic orbital electron populations 1.22051 0.92500 1.04490 0.99128 1.20932 0.95535 0.94467 0.83982 0.92636 1.22949 0.84453 1.01099 1.00358 1.58630 1.12742 1.46434 1.02068 1.19443 0.93622 0.88804 0.91384 1.20683 0.93512 1.05050 0.99227 1.21129 0.99808 0.92885 0.91158 1.18856 0.94246 1.11809 0.93046 1.20879 0.79689 0.74110 0.87600 1.90883 1.60039 1.49317 1.41229 1.84579 1.25293 1.78374 1.44442 1.20948 0.93208 0.92657 0.97022 1.21235 1.00526 1.05101 0.94460 1.22817 1.00828 0.94777 0.89703 1.21560 0.83397 0.99542 0.95582 1.48380 1.06694 1.62502 1.20602 1.18173 0.84559 0.79795 0.80740 1.90617 1.17524 1.59405 1.77263 1.20932 1.01416 1.33610 1.02380 0.91138 1.25688 0.94115 0.94481 0.98770 1.69968 1.06524 1.35022 1.28082 0.86468 0.79140 0.80704 0.80690 1.19274 1.20541 1.19235 0.96026 0.89787 0.91552 0.92851 0.89781 0.84733 0.84521 0.73053 0.84701 0.84363 0.89638 0.92916 0.87917 0.92869 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.46 7.64 37.16 0.28 -2.18 16 2 C 0.16 2.88 3.65 -67.49 -0.25 2.63 16 3 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.04 0.58 3.58 -3.70 -0.01 0.57 16 5 N -0.49 -6.81 4.65 -170.82 -0.80 -7.60 16 6 C 0.17 2.11 5.64 -83.86 -0.47 1.64 16 7 C -0.16 -1.78 9.09 -39.62 -0.36 -2.14 16 8 C -0.03 -0.31 9.58 -39.38 -0.38 -0.69 16 9 C -0.18 -2.01 5.88 -104.97 -0.62 -2.62 16 10 C 0.53 5.94 8.26 34.45 0.28 6.22 16 11 O -0.52 -7.27 17.12 -19.28 -0.33 -7.60 16 12 O -0.52 -4.07 12.67 -40.68 -0.52 -4.59 16 13 C -0.02 -0.22 9.56 -39.38 -0.38 -0.60 16 14 C -0.19 -2.30 8.77 -39.62 -0.35 -2.65 16 15 C 0.04 0.62 5.42 -3.70 -0.02 0.60 16 16 C 0.12 2.12 6.52 -3.60 -0.02 2.10 16 17 N -0.64 -13.60 3.01 -166.57 -0.50 -14.10 16 18 C 0.56 14.82 7.38 -12.98 -0.10 14.73 16 19 O -0.57 -16.65 10.79 5.20 0.06 -16.59 16 20 C -0.55 -14.39 8.84 -35.63 -0.31 -14.71 16 21 H 0.07 1.68 5.75 -52.49 -0.30 1.38 16 22 C 0.09 2.37 5.50 -17.37 -0.10 2.27 16 23 N -0.77 -21.91 11.86 55.55 0.66 -21.25 16 24 Si 0.91 19.20 29.56 -169.99 -5.02 14.18 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 28 H 0.02 0.35 8.13 -51.93 -0.42 -0.08 16 29 H 0.08 1.92 6.65 -51.93 -0.35 1.58 16 30 H 0.07 1.50 6.92 -51.93 -0.36 1.14 16 31 H 0.05 0.85 7.80 -51.93 -0.41 0.44 16 32 H 0.08 1.10 6.86 -51.93 -0.36 0.74 16 33 H 0.13 1.26 7.13 -52.48 -0.37 0.88 16 34 H 0.14 1.11 7.60 -52.49 -0.40 0.71 16 35 H 0.41 1.40 9.11 45.56 0.42 1.82 16 36 H 0.14 1.47 7.64 -52.49 -0.40 1.07 16 37 H 0.14 1.56 5.77 -52.49 -0.30 1.25 16 38 H 0.09 0.97 6.63 -51.93 -0.34 0.62 16 39 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.81 5.39 -51.93 -0.28 1.53 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 LS Contribution 340.40 15.07 5.13 5.13 Total: -1.00 -33.38 340.40 -8.39 -41.77 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.28 Total: 5.48 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: -2.79 Total: 5.17 kcal Atomic # 7 Polarization: -42.32 SS G_CDS: -0.64 Total: -42.96 kcal Atomic # 8 Polarization: -27.98 SS G_CDS: -0.79 Total: -28.77 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.02 Total: 14.18 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.38 -8.39 -41.77 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594562141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.518 kcal (2) G-P(sol) polarization free energy of solvation -33.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.895 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds