Wall clock time and date at job start Tue Mar 31 2020 12:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.62811 * 2 1 4 4 C 1.53242 * 109.62895 * 120.38760 * 2 1 3 5 5 N 1.46897 * 109.34137 * 173.53777 * 4 2 1 6 6 C 1.39003 * 111.00019 * 172.74604 * 5 4 2 7 7 C 1.39240 * 119.92504 * 179.97438 * 6 5 4 8 8 C 1.37112 * 120.07705 * 180.25448 * 7 6 5 9 9 C 1.39865 * 119.92046 * 359.52257 * 8 7 6 10 10 C 1.47375 * 120.07429 * 180.25663 * 9 8 7 11 11 O 1.21517 * 120.00464 * 180.20470 * 10 9 8 12 12 O 1.34770 * 119.99852 * 0.20077 * 10 9 8 13 13 C 1.39857 * 119.85402 * 0.45395 * 9 8 7 14 14 C 1.37115 * 119.92482 * 359.77490 * 13 9 8 15 15 C 1.46901 * 111.26858 * 296.89612 * 5 4 2 16 16 C 1.53246 * 109.33850 * 63.10335 * 15 5 4 17 17 N 1.47076 * 108.52211 * 306.17142 * 16 15 5 18 18 C 1.34781 * 120.87944 * 231.16736 * 17 16 15 19 19 O 1.21687 * 119.99997 * 185.71094 * 18 17 16 20 20 C 1.46377 * 119.99932 * 5.70034 * 18 17 16 21 21 H 1.08002 * 119.99785 * 8.47184 * 20 18 17 22 22 C 1.40045 * 119.99821 * 188.46269 * 20 18 17 23 23 N 1.30667 * 120.00347 * 0.02562 * 22 20 18 24 24 Si 1.86803 * 119.99750 * 180.02562 * 22 20 18 25 25 H 1.48497 * 109.47276 * 60.00323 * 24 22 20 26 26 H 1.48499 * 109.47049 * 180.02562 * 24 22 20 27 27 H 1.48502 * 109.47338 * 300.00313 * 24 22 20 28 28 H 1.09004 * 109.47105 * 291.59926 * 1 2 3 29 29 H 1.09000 * 109.47218 * 51.59437 * 1 2 3 30 30 H 1.09001 * 109.47372 * 171.59332 * 1 2 3 31 31 H 1.09003 * 109.49096 * 53.57538 * 4 2 1 32 32 H 1.08996 * 109.49156 * 293.50253 * 4 2 1 33 33 H 1.08003 * 119.96614 * 359.97438 * 7 6 5 34 34 H 1.07998 * 120.04035 * 179.74827 * 8 7 6 35 35 H 0.96699 * 116.99498 * 180.02562 * 12 10 9 36 36 H 1.07994 * 120.03999 * 179.79689 * 13 9 8 37 37 H 1.08001 * 119.96525 * 179.97438 * 14 13 9 38 38 H 1.08998 * 109.48978 * 183.06162 * 15 5 4 39 39 H 1.08997 * 109.49260 * 303.14424 * 15 5 4 40 40 H 1.08999 * 109.62753 * 186.45520 * 16 15 5 41 41 H 1.09001 * 109.78530 * 65.97642 * 16 15 5 42 42 H 0.96998 * 120.00483 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8961 1.0267 0.0000 4 6 2.0448 -0.7301 1.2451 5 7 3.5054 -0.8625 1.1624 6 6 4.0271 -1.3731 2.3453 7 6 5.3992 -1.5750 2.4692 8 6 5.9166 -2.0834 3.6327 9 6 5.0655 -2.3899 4.6994 10 6 5.6186 -2.9312 5.9536 11 8 4.8776 -3.2005 6.8783 12 8 6.9464 -3.1276 6.0750 13 6 3.6879 -2.1854 4.5718 14 6 3.1765 -1.6811 3.4038 15 6 3.9015 -1.6872 0.0130 16 6 3.4628 -0.9962 -1.2826 17 7 2.0240 -0.7048 -1.1926 18 6 1.1807 -1.0736 -2.1772 19 8 0.0127 -0.7344 -2.1367 20 6 1.6697 -1.8819 -3.2952 21 1 2.6661 -2.2976 -3.2658 22 6 0.8455 -2.1163 -4.4030 23 7 -0.3598 -1.6131 -4.4387 24 14 1.4694 -3.1485 -5.8295 25 1 1.8125 -4.5090 -5.3433 26 1 0.4137 -3.2454 -6.8692 27 1 2.6784 -2.5110 -6.4102 28 1 -0.3633 0.3783 0.9555 29 1 -0.3633 0.6384 -0.8053 30 1 -0.3634 -1.0166 -0.1502 31 1 1.5923 -1.7203 1.2991 32 1 1.7810 -0.1602 2.1359 33 1 6.0563 -1.3352 1.6463 34 1 6.9805 -2.2436 3.7267 35 1 7.2621 -3.4849 6.9163 36 1 3.0276 -2.4240 5.3923 37 1 2.1127 -1.5233 3.3043 38 1 4.9844 -1.8112 0.0104 39 1 3.4232 -2.6640 0.0842 40 1 3.6508 -1.6548 -2.1305 41 1 4.0174 -0.0666 -1.4110 42 1 -0.9305 -1.7751 -5.2061 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001594562141.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:06 Heat of formation + Delta-G solvation = -90.695250 kcal Electronic energy + Delta-G solvation = -26492.225366 eV Core-core repulsion = 22630.113799 eV Total energy + Delta-G solvation = -3862.111567 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.78358 -41.04573 -39.81482 -37.92989 -37.04054 -35.38746 -34.67341 -33.74983 -32.16256 -31.24016 -29.18293 -27.96019 -27.16155 -24.98119 -23.95362 -23.05020 -22.71996 -21.61110 -20.46926 -19.10491 -18.78363 -18.35005 -17.75705 -17.24862 -16.73140 -16.61996 -16.56902 -16.14615 -15.80160 -15.62773 -15.21864 -15.08612 -14.56383 -14.55339 -14.49556 -13.81559 -13.66520 -13.34488 -13.28611 -13.12653 -12.96565 -12.87689 -12.64563 -12.55686 -12.49514 -12.22361 -12.10651 -12.05306 -11.95675 -11.69859 -11.67578 -10.93260 -10.86345 -10.08608 -9.30271 -9.10117 -8.91585 -8.20791 -6.79234 -0.33681 0.40202 1.41468 1.43825 1.49597 1.54813 2.13638 2.23817 2.46387 2.51037 2.79338 2.86994 3.61015 3.70891 3.82650 3.91054 3.95199 4.07546 4.21386 4.23814 4.29492 4.36143 4.45950 4.51307 4.54978 4.64335 4.65975 4.78954 4.88198 5.00392 5.03129 5.16537 5.20594 5.29415 5.33420 5.41229 5.57422 5.59446 5.62536 5.74899 5.86138 6.15403 6.18650 6.43239 6.92386 7.00335 7.46141 8.52332 8.71261 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.023016 B = 0.002862 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1216.229463 B = 9781.256539 C =10438.497643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.152 3.848 3 H 0.062 0.938 4 C 0.053 3.947 5 N -0.487 5.487 6 C 0.151 3.849 7 C -0.158 4.158 8 C -0.022 4.022 9 C -0.184 4.184 10 C 0.537 3.463 11 O -0.558 6.558 12 O -0.504 6.504 13 C -0.028 4.028 14 C -0.196 4.196 15 C 0.053 3.947 16 C 0.120 3.880 17 N -0.647 5.647 18 C 0.544 3.456 19 O -0.610 6.610 20 C -0.571 4.571 21 H 0.092 0.908 22 C 0.033 3.967 23 N -0.823 5.823 24 Si 0.989 3.011 25 H -0.257 1.257 26 H -0.279 1.279 27 H -0.252 1.252 28 H 0.060 0.940 29 H 0.044 0.956 30 H 0.030 0.970 31 H 0.040 0.960 32 H 0.108 0.892 33 H 0.155 0.845 34 H 0.162 0.838 35 H 0.432 0.568 36 H 0.135 0.865 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.038 0.962 40 H 0.095 0.905 41 H 0.066 0.934 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.349 -1.997 14.803 22.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.047 3.953 3 H 0.080 0.920 4 C -0.075 4.075 5 N -0.200 5.200 6 C 0.051 3.949 7 C -0.178 4.178 8 C -0.041 4.041 9 C -0.187 4.187 10 C 0.384 3.616 11 O -0.451 6.451 12 O -0.317 6.317 13 C -0.047 4.047 14 C -0.217 4.217 15 C -0.072 4.072 16 C -0.004 4.004 17 N -0.385 5.385 18 C 0.350 3.650 19 O -0.496 6.496 20 C -0.607 4.607 21 H 0.110 0.890 22 C -0.182 4.182 23 N -0.452 5.452 24 Si 0.809 3.191 25 H -0.181 1.181 26 H -0.204 1.204 27 H -0.176 1.176 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.126 0.874 33 H 0.173 0.827 34 H 0.180 0.820 35 H 0.294 0.706 36 H 0.153 0.847 37 H 0.157 0.843 38 H 0.140 0.860 39 H 0.056 0.944 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.391 -1.202 14.435 21.135 hybrid contribution -0.548 -1.107 -0.002 1.235 sum 14.843 -2.309 14.433 20.832 Atomic orbital electron populations 1.21757 0.93938 1.01497 0.99589 1.21048 0.94471 0.95122 0.84621 0.91990 1.22712 0.85562 1.00199 0.99017 1.58649 1.11585 1.47050 1.02672 1.19517 0.94534 0.90157 0.90658 1.20911 0.92843 1.04068 1.00026 1.21367 1.00846 0.91639 0.90214 1.19065 0.94368 1.11549 0.93672 1.20845 0.80376 0.73381 0.87020 1.90878 1.61072 1.50858 1.42289 1.84522 1.23315 1.77884 1.46016 1.21011 0.93759 0.92914 0.97002 1.21281 1.00716 1.05159 0.94551 1.22723 1.02750 0.93480 0.88246 1.21732 0.80950 1.00368 0.97310 1.48248 1.08078 1.61854 1.20318 1.18523 0.84611 0.79918 0.81958 1.90599 1.19521 1.60846 1.78633 1.21473 1.02538 1.33923 1.02796 0.89034 1.26869 0.93966 0.95446 1.01965 1.70151 1.08448 1.37266 1.29382 0.85191 0.78725 0.78876 0.76294 1.18078 1.20447 1.17604 0.92149 0.93664 0.95060 0.94133 0.87419 0.82720 0.82005 0.70627 0.84692 0.84268 0.85954 0.94363 0.88687 0.91555 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.55 7.64 71.98 0.55 -4.01 16 2 C 0.15 5.63 3.65 44.96 0.16 5.80 16 3 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.05 1.53 3.58 86.38 0.31 1.84 16 5 N -0.49 -12.50 4.65 -694.36 -3.23 -15.74 16 6 C 0.15 3.39 5.64 38.49 0.22 3.61 16 7 C -0.16 -2.82 9.09 22.25 0.20 -2.61 16 8 C -0.02 -0.36 9.58 22.40 0.21 -0.15 16 9 C -0.18 -3.71 5.88 -20.09 -0.12 -3.83 16 10 C 0.54 10.75 8.26 70.23 0.58 11.33 16 11 O -0.56 -14.72 17.12 19.78 0.34 -14.38 16 12 O -0.50 -6.29 12.67 -56.80 -0.72 -7.01 16 13 C -0.03 -0.60 9.56 22.40 0.21 -0.39 16 14 C -0.20 -4.35 8.77 22.25 0.20 -4.15 16 15 C 0.05 1.38 5.42 86.39 0.47 1.85 16 16 C 0.12 3.96 6.52 86.35 0.56 4.53 16 17 N -0.65 -27.85 3.01 -799.13 -2.40 -30.25 16 18 C 0.54 29.93 7.38 86.36 0.64 30.57 16 19 O -0.61 -38.13 10.79 -4.31 -0.05 -38.18 16 20 C -0.57 -30.67 8.84 24.83 0.22 -30.45 16 21 H 0.09 4.34 5.75 -2.91 -0.02 4.33 16 22 C 0.03 1.75 5.50 85.30 0.47 2.22 16 23 N -0.82 -48.98 11.86 21.83 0.26 -48.72 16 24 Si 0.99 39.58 29.56 68.60 2.03 41.60 16 25 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 26 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 27 H -0.25 -9.38 7.11 99.48 0.71 -8.68 16 28 H 0.06 1.97 8.13 -2.38 -0.02 1.95 16 29 H 0.04 2.20 6.65 -2.39 -0.02 2.18 16 30 H 0.03 1.48 6.92 -2.39 -0.02 1.46 16 31 H 0.04 1.28 7.80 -2.39 -0.02 1.26 16 32 H 0.11 2.61 6.86 -2.39 -0.02 2.59 16 33 H 0.16 2.12 7.13 -2.91 -0.02 2.10 16 34 H 0.16 1.84 7.60 -2.91 -0.02 1.81 16 35 H 0.43 1.56 9.11 -74.06 -0.67 0.88 16 36 H 0.14 2.85 7.64 -2.91 -0.02 2.83 16 37 H 0.14 2.96 5.77 -2.91 -0.02 2.95 16 38 H 0.12 2.28 6.63 -2.39 -0.02 2.26 16 39 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 3.26 5.39 -2.39 -0.01 3.25 16 41 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.27 14.86 8.29 -92.71 -0.77 14.09 16 Total: -1.00 -76.77 340.40 1.51 -75.26 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: 0.40 Total: 21.26 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: 4.89 Total: 16.15 kcal Atomic # 7 Polarization: -89.34 SS G_CDS: -5.38 Total: -94.71 kcal Atomic # 8 Polarization: -59.13 SS G_CDS: -0.43 Total: -59.56 kcal Atomic # 14 Polarization: 39.58 SS G_CDS: 2.03 Total: 41.60 kcal Total: -76.77 1.51 -75.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594562141.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.433 kcal (2) G-P(sol) polarization free energy of solvation -76.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds