Wall clock time and date at job start Tue Mar 31 2020 13:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46507 * 109.47079 * 2 1 4 4 N 1.39920 * 125.74212 * 269.95921 * 3 2 1 5 5 C 1.30438 * 108.91836 * 179.75186 * 4 3 2 6 6 C 1.50698 * 125.99506 * 180.26714 * 5 4 3 7 7 C 1.41336 * 108.00888 * 0.44142 * 5 4 3 8 8 C 1.47293 * 126.42680 * 179.81736 * 7 5 4 9 9 O 1.21521 * 120.00080 * 269.69354 * 8 7 5 10 10 O 1.34751 * 119.99710 * 89.69249 * 8 7 5 11 11 C 1.45206 * 116.99792 * 180.02562 * 10 8 7 12 12 H 1.09000 * 109.47078 * 330.00188 * 11 10 8 13 13 C 1.50704 * 109.47006 * 209.99986 * 11 10 8 14 14 H 1.07998 * 119.99806 * 0.02562 * 13 11 10 15 15 C 1.37876 * 119.99865 * 180.02562 * 13 11 10 16 16 N 1.31518 * 119.99732 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 119.99950 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47469 * 89.99631 * 17 15 13 19 19 H 1.48501 * 109.47077 * 209.99793 * 17 15 13 20 20 H 1.48501 * 109.47246 * 329.99803 * 17 15 13 21 21 C 1.50703 * 109.46987 * 89.99901 * 11 10 8 22 22 C 1.34512 * 125.79034 * 219.99770 * 21 11 10 23 23 C 1.41378 * 106.83850 * 180.02562 * 22 21 11 24 24 C 1.34509 * 106.84514 * 0.02562 * 23 22 21 25 25 O 1.34305 * 125.78472 * 39.69553 * 21 11 10 26 26 C 1.34222 * 125.73864 * 90.00255 * 3 2 1 27 27 C 1.50696 * 126.30096 * 359.94485 * 26 3 2 28 28 H 1.09000 * 109.47541 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47021 * 299.99930 * 1 2 3 30 30 H 1.08993 * 109.47475 * 59.99415 * 1 2 3 31 31 H 1.09000 * 109.47328 * 240.00277 * 2 1 3 32 32 H 1.09004 * 109.47346 * 120.00093 * 2 1 3 33 33 H 1.09006 * 109.46944 * 270.20911 * 6 5 4 34 34 H 1.09003 * 109.47383 * 30.20524 * 6 5 4 35 35 H 1.08996 * 109.47305 * 150.21456 * 6 5 4 36 36 H 0.97002 * 119.99723 * 180.02562 * 16 15 13 37 37 H 1.08002 * 126.57458 * 0.04190 * 22 21 11 38 38 H 1.08010 * 126.57513 * 179.97438 * 23 22 21 39 39 H 1.08003 * 125.78880 * 180.02562 * 24 23 22 40 40 H 1.09006 * 109.46990 * 269.99768 * 27 26 3 41 41 H 1.08997 * 109.47181 * 29.99489 * 27 26 3 42 42 H 1.08997 * 109.47429 * 150.00214 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2915 2.1516 -1.1357 5 6 2.7024 3.3306 -0.7582 6 6 3.0960 4.4649 -1.6689 7 6 2.7175 3.3563 0.6549 8 6 3.1188 4.4904 1.5048 9 8 4.2764 4.6069 1.8557 10 8 2.2023 5.3987 1.8931 11 6 2.6692 6.4901 2.7294 12 1 3.5122 6.1514 3.3316 13 6 1.5531 6.9412 3.6360 14 1 0.5895 6.4558 3.5888 15 6 1.7622 7.9734 4.5258 16 7 2.9359 8.5641 4.5836 17 14 0.3790 8.5320 5.6501 18 1 0.4289 7.7599 6.9176 19 1 0.5350 9.9790 5.9454 20 1 -0.9265 8.3013 4.9810 21 6 3.1043 7.6400 1.8579 22 6 4.1814 8.4192 2.0634 23 6 4.2094 9.3646 1.0125 24 6 3.1476 9.1070 0.2281 25 8 2.4856 8.0570 0.7412 26 6 2.2797 2.1204 1.0895 27 6 2.1237 1.6827 2.5230 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.1608 4.3984 -1.8927 34 1 2.5254 4.4017 -2.5955 35 1 2.8869 5.4149 -1.1773 36 1 3.0831 9.2901 5.2099 37 1 4.8890 8.3379 2.8752 38 1 4.9424 10.1446 0.8679 39 1 2.8768 9.6487 -0.6662 40 1 1.1175 1.9205 2.8681 41 1 2.2877 0.6075 2.5944 42 1 2.8531 2.2035 3.1434 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646914582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:00 Heat of formation + Delta-G solvation = -20.522378 kcal Electronic energy + Delta-G solvation = -27125.872668 eV Core-core repulsion = 23266.804025 eV Total energy + Delta-G solvation = -3859.068643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.15411 -42.60296 -40.85919 -37.46236 -36.01527 -35.25617 -33.52921 -33.51636 -32.02390 -31.43961 -29.16957 -28.51515 -28.22316 -25.54677 -24.44287 -23.18760 -22.34054 -21.47247 -20.79446 -20.46210 -19.12977 -18.53295 -18.30366 -17.67427 -17.06048 -16.66156 -16.48709 -16.29673 -16.25313 -15.29635 -15.12672 -14.67557 -14.58782 -14.40204 -14.17219 -13.97519 -13.81229 -13.54047 -13.46936 -13.45277 -13.18461 -13.14830 -13.03089 -12.95539 -12.78672 -12.75726 -12.24035 -12.20650 -12.03396 -11.91341 -11.46945 -11.33628 -10.78452 -10.49273 -10.22850 -9.68827 -9.09417 -8.22184 -6.50887 0.55599 1.08245 1.12620 1.24112 1.33349 1.41277 1.43374 1.54235 1.99171 2.18822 2.43611 2.46687 3.02982 3.36876 3.46246 3.81154 3.98919 4.04584 4.07288 4.24305 4.27567 4.33944 4.42479 4.56332 4.58490 4.61885 4.64195 4.67051 4.73851 4.77219 4.84588 4.96151 4.99420 5.17425 5.23586 5.31799 5.38538 5.43351 5.47192 5.67474 5.82657 5.90129 5.95994 6.48824 6.50442 6.58693 6.90650 7.20786 8.74970 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013962 B = 0.004441 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2005.020537 B = 6303.796901 C = 7566.365154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.113 3.887 3 N -0.349 5.349 4 N -0.308 5.308 5 C 0.110 3.890 6 C -0.076 4.076 7 C -0.306 4.306 8 C 0.547 3.453 9 O -0.541 6.541 10 O -0.350 6.350 11 C 0.300 3.700 12 H 0.043 0.957 13 C -0.555 4.555 14 H 0.072 0.928 15 C 0.027 3.973 16 N -0.890 5.890 17 Si 0.980 3.020 18 H -0.264 1.264 19 H -0.278 1.278 20 H -0.267 1.267 21 C -0.004 4.004 22 C -0.191 4.191 23 C -0.227 4.227 24 C -0.069 4.069 25 O -0.194 6.194 26 C 0.146 3.854 27 C -0.100 4.100 28 H 0.110 0.890 29 H 0.058 0.942 30 H 0.047 0.953 31 H 0.110 0.890 32 H 0.128 0.872 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.271 0.729 37 H 0.122 0.878 38 H 0.166 0.834 39 H 0.240 0.760 40 H 0.103 0.897 41 H 0.120 0.880 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.520 -13.812 -8.379 16.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.128 5.128 4 N -0.130 5.130 5 C -0.056 4.056 6 C -0.135 4.135 7 C -0.319 4.319 8 C 0.390 3.610 9 O -0.431 6.431 10 O -0.266 6.266 11 C 0.246 3.754 12 H 0.061 0.939 13 C -0.592 4.592 14 H 0.090 0.910 15 C -0.176 4.176 16 N -0.525 5.525 17 Si 0.803 3.197 18 H -0.189 1.189 19 H -0.203 1.203 20 H -0.191 1.191 21 C -0.055 4.055 22 C -0.211 4.211 23 C -0.246 4.246 24 C -0.136 4.136 25 O -0.092 6.092 26 C 0.013 3.987 27 C -0.158 4.158 28 H 0.128 0.872 29 H 0.077 0.923 30 H 0.066 0.934 31 H 0.129 0.871 32 H 0.146 0.854 33 H 0.109 0.891 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.140 0.860 38 H 0.183 0.817 39 H 0.256 0.744 40 H 0.122 0.878 41 H 0.138 0.862 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.652 -14.658 -9.291 17.735 hybrid contribution 0.272 1.579 1.558 2.235 sum -3.381 -13.079 -7.733 15.566 Atomic orbital electron populations 1.22176 0.93024 1.04784 1.02396 1.22301 0.96238 0.75043 1.06902 1.48718 1.48929 1.13310 1.01883 1.76980 1.24212 1.03601 1.08250 1.22529 0.96675 0.94985 0.91448 1.20305 1.03063 0.92073 0.98014 1.19208 1.24510 0.94448 0.93728 1.20639 0.82955 0.81120 0.76247 1.90750 1.21259 1.76184 1.54889 1.86718 1.41354 1.35530 1.62972 1.18814 0.96496 0.76122 0.83939 0.93904 1.21106 0.98267 1.20390 1.19442 0.90959 1.25797 0.98991 0.94941 0.97915 1.70169 1.23451 1.23022 1.35815 0.85231 0.78466 0.77534 0.78518 1.18867 1.20330 1.19105 1.23301 0.92869 1.01978 0.87345 1.21276 1.00074 0.99222 1.00544 1.22028 1.02239 1.03323 0.96962 1.24674 0.94651 0.91816 1.02437 1.83972 1.49219 1.41075 1.34886 1.21664 0.94469 0.89619 0.92901 1.20760 1.04818 1.04501 0.85676 0.87164 0.92287 0.93371 0.87139 0.85446 0.89115 0.87982 0.92072 0.92007 0.85999 0.81664 0.74422 0.87823 0.86169 0.91099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 71.98 0.74 -1.30 16 2 C 0.11 1.58 6.93 86.38 0.60 2.18 16 3 N -0.35 -9.00 3.58 -332.94 -1.19 -10.20 16 4 N -0.31 -9.69 12.50 -46.65 -0.58 -10.28 16 5 C 0.11 3.85 7.27 43.53 0.32 4.17 16 6 C -0.08 -2.31 10.28 71.24 0.73 -1.58 16 7 C -0.31 -11.91 6.00 -20.16 -0.12 -12.03 16 8 C 0.55 25.95 7.09 70.20 0.50 26.45 16 9 O -0.54 -28.41 16.37 19.77 0.32 -28.09 16 10 O -0.35 -18.30 9.86 -54.61 -0.54 -18.84 16 11 C 0.30 17.01 2.42 29.10 0.07 17.08 16 12 H 0.04 2.66 7.15 -2.39 -0.02 2.65 16 13 C -0.56 -31.88 8.89 25.60 0.23 -31.65 16 14 H 0.07 4.08 7.81 -2.91 -0.02 4.06 16 15 C 0.03 1.48 5.30 84.65 0.45 1.93 16 16 N -0.89 -50.47 10.95 21.45 0.23 -50.24 16 17 Si 0.98 42.93 29.54 68.60 2.03 44.96 16 18 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 19 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 21 C 0.00 -0.24 5.53 24.83 0.14 -0.10 16 22 C -0.19 -9.89 9.17 22.19 0.20 -9.69 16 23 C -0.23 -9.48 10.91 22.19 0.24 -9.24 16 24 C -0.07 -2.74 12.09 66.97 0.81 -1.93 16 25 O -0.19 -9.68 10.65 -1.27 -0.01 -9.69 16 26 C 0.15 4.40 7.01 42.17 0.30 4.70 16 27 C -0.10 -2.23 9.93 71.23 0.71 -1.52 16 28 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 30 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.13 0.98 7.01 -2.39 -0.02 0.96 16 33 H 0.09 2.51 8.14 -2.38 -0.02 2.49 16 34 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 35 H 0.06 2.12 8.01 -2.39 -0.02 2.10 16 36 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 37 H 0.12 6.62 7.87 -2.91 -0.02 6.60 16 38 H 0.17 5.59 8.06 -2.91 -0.02 5.57 16 39 H 0.24 6.39 8.06 -2.91 -0.02 6.37 16 40 H 0.10 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.12 1.56 7.05 -2.39 -0.02 1.54 16 42 H 0.07 1.92 7.96 -2.39 -0.02 1.90 16 Total: -1.00 -78.29 368.10 7.19 -71.09 By element: Atomic # 1 Polarization: 22.77 SS G_CDS: 1.03 Total: 23.80 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.90 Total: -12.53 kcal Atomic # 7 Polarization: -69.17 SS G_CDS: -1.54 Total: -70.71 kcal Atomic # 8 Polarization: -56.39 SS G_CDS: -0.23 Total: -56.62 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -78.29 7.19 -71.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.571 kcal (2) G-P(sol) polarization free energy of solvation -78.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds