Wall clock time and date at job start Tue Mar 31 2020 13:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47188 * 2 1 4 4 N 1.39926 * 125.74536 * 90.02344 * 3 2 1 5 5 C 1.30432 * 108.91818 * 180.02562 * 4 3 2 6 6 C 1.50694 * 125.99149 * 180.02562 * 5 4 3 7 7 C 1.41339 * 108.01463 * 359.97438 * 5 4 3 8 8 C 1.47286 * 126.43220 * 180.02562 * 7 5 4 9 9 O 1.21527 * 120.00110 * 90.02198 * 8 7 5 10 10 O 1.34750 * 119.99899 * 270.03155 * 8 7 5 11 11 C 1.45202 * 116.99737 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47201 * 30.00161 * 11 10 8 13 13 C 1.50702 * 109.46885 * 149.99873 * 11 10 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.50700 * 109.47358 * 269.99976 * 11 10 8 22 22 C 1.34511 * 125.79031 * 144.71900 * 21 11 10 23 23 C 1.41379 * 106.84521 * 179.89176 * 22 21 11 24 24 C 1.34520 * 106.83536 * 0.36719 * 23 22 21 25 25 O 1.34296 * 108.42315 * 359.77591 * 24 23 22 26 26 C 1.34226 * 125.73847 * 270.34031 * 3 2 1 27 27 C 1.50698 * 126.30019 * 359.97438 * 26 3 2 28 28 H 1.09005 * 109.47472 * 300.00433 * 1 2 3 29 29 H 1.08998 * 109.47017 * 60.00133 * 1 2 3 30 30 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47485 * 239.99692 * 2 1 3 32 32 H 1.08999 * 109.46820 * 119.99357 * 2 1 3 33 33 H 1.09002 * 109.47032 * 269.96802 * 6 5 4 34 34 H 1.08995 * 109.47770 * 29.97035 * 6 5 4 35 35 H 1.08999 * 109.47351 * 149.97066 * 6 5 4 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 37 37 H 1.08003 * 126.57938 * 0.02562 * 22 21 11 38 38 H 1.07992 * 126.58428 * 180.16419 * 23 22 21 39 39 H 1.07999 * 125.78572 * 179.75417 * 24 23 22 40 40 H 1.08998 * 109.47136 * 270.22256 * 27 26 3 41 41 H 1.09007 * 109.46816 * 30.22321 * 27 26 3 42 42 H 1.09000 * 109.47374 * 150.22172 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2913 2.1518 1.1357 5 6 2.7068 3.3291 0.7581 6 6 3.1077 4.4608 1.6688 7 6 2.7162 3.3568 -0.6550 8 6 3.1169 4.4910 -1.5049 9 8 4.2744 4.6079 -1.8562 10 8 2.2001 5.3991 -1.8929 11 6 2.6664 6.4906 -2.7293 12 1 3.5092 6.1521 -3.3319 13 6 1.5498 6.9414 -3.6355 14 1 0.5860 6.4564 -3.5874 15 6 1.7568 7.9773 -4.5217 16 7 2.9303 8.5681 -4.5800 17 14 0.3705 8.5411 -5.6395 18 1 -0.7759 8.9989 -4.8141 19 1 0.8460 9.6606 -6.4915 20 1 -0.0604 7.4117 -6.5021 21 6 3.1015 7.6406 -1.8580 22 6 4.1255 8.4755 -2.1107 23 6 4.1748 9.3988 -1.0412 24 6 3.1831 9.0679 -0.1947 25 8 2.5364 8.0023 -0.6945 26 6 2.2736 2.1226 -1.0895 27 6 2.1112 1.6871 -2.5230 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8900 33 1 2.2354 5.0763 1.8890 34 1 3.5099 4.0552 2.5971 35 1 3.8676 5.0696 1.1790 36 1 3.0760 9.2966 -5.2037 37 1 4.7824 8.4474 -2.9675 38 1 4.8763 10.2115 -0.9244 39 1 2.9473 9.5732 0.7302 40 1 3.0397 1.2363 -2.8732 41 1 1.3043 0.9573 -2.5918 42 1 1.8718 2.5526 -3.1408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646914583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:06 Heat of formation + Delta-G solvation = -0.245941 kcal Electronic energy + Delta-G solvation = -27133.488912 eV Core-core repulsion = 23275.299522 eV Total energy + Delta-G solvation = -3858.189390 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.39531 -41.26609 -39.05799 -35.59359 -35.00048 -33.26390 -32.42717 -31.63892 -30.89080 -29.59896 -27.89781 -27.22157 -26.55937 -24.05282 -22.99782 -21.77894 -20.52210 -19.78833 -19.34343 -19.10632 -17.38462 -16.67693 -16.60455 -16.23400 -15.34401 -15.29748 -14.79956 -14.76975 -14.45418 -14.29576 -13.81680 -13.34264 -13.22463 -13.15279 -12.90079 -12.72504 -12.45999 -12.28989 -12.00021 -11.87922 -11.82182 -11.70571 -11.55640 -11.53277 -11.22823 -11.10857 -10.94471 -10.62717 -10.37497 -10.04659 -9.72326 -9.39020 -9.08255 -8.79936 -8.60325 -8.38505 -7.20447 -6.18703 -4.37998 1.75785 2.33293 2.59311 2.87037 2.93890 3.23751 3.27519 3.29735 3.73903 4.01912 4.22999 4.27766 4.41263 4.53408 4.71935 4.82236 4.95616 4.97077 5.08600 5.30441 5.38134 5.45072 5.47437 5.70454 5.77323 5.80585 5.89095 5.89757 5.90298 6.05210 6.09540 6.12843 6.43051 6.62613 6.77370 6.94604 7.04056 7.21211 7.28781 7.41857 7.71193 7.72708 7.76553 7.88724 8.41443 8.56022 8.83372 9.28853 10.78397 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.004441 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.652964 B = 6302.807008 C = 7571.381719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.128 3.872 3 N -0.362 5.362 4 N -0.301 5.301 5 C 0.122 3.878 6 C -0.077 4.077 7 C -0.255 4.255 8 C 0.540 3.460 9 O -0.508 6.508 10 O -0.340 6.340 11 C 0.297 3.703 12 H 0.078 0.922 13 C -0.529 4.529 14 H 0.077 0.923 15 C 0.070 3.930 16 N -0.867 5.867 17 Si 0.913 3.087 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.022 3.978 22 C -0.175 4.175 23 C -0.219 4.219 24 C -0.090 4.090 25 O -0.177 6.177 26 C 0.133 3.867 27 C -0.101 4.101 28 H 0.067 0.933 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.269 0.731 37 H 0.145 0.855 38 H 0.130 0.870 39 H 0.184 0.816 40 H 0.087 0.913 41 H 0.076 0.924 42 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.067 -12.771 7.490 14.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 N -0.142 5.142 4 N -0.122 5.122 5 C -0.045 4.045 6 C -0.136 4.136 7 C -0.267 4.267 8 C 0.381 3.619 9 O -0.397 6.397 10 O -0.256 6.256 11 C 0.244 3.756 12 H 0.095 0.905 13 C -0.566 4.566 14 H 0.095 0.905 15 C -0.136 4.136 16 N -0.502 5.502 17 Si 0.740 3.260 18 H -0.199 1.199 19 H -0.209 1.209 20 H -0.198 1.198 21 C -0.029 4.029 22 C -0.195 4.195 23 C -0.238 4.238 24 C -0.157 4.157 25 O -0.074 6.074 26 C 0.003 3.997 27 C -0.159 4.159 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.112 0.888 32 H 0.115 0.885 33 H 0.103 0.897 34 H 0.095 0.905 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.163 0.837 38 H 0.148 0.852 39 H 0.200 0.800 40 H 0.105 0.895 41 H 0.095 0.905 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.178 -13.591 8.382 16.116 hybrid contribution -0.260 1.385 -1.354 1.954 sum -2.438 -12.206 7.028 14.294 Atomic orbital electron populations 1.22208 0.94076 1.03042 1.03674 1.21705 0.95410 0.77656 1.04522 1.48234 1.50893 1.12005 1.03075 1.77038 1.24041 1.04013 1.07148 1.22266 0.96296 0.94037 0.91870 1.20272 1.02564 0.93371 0.97395 1.19173 1.20099 0.94246 0.93229 1.20068 0.83728 0.81139 0.76927 1.90796 1.20056 1.75434 1.53389 1.86719 1.40479 1.35308 1.63056 1.19197 0.97788 0.75157 0.83478 0.90472 1.20857 0.98267 1.19368 1.18155 0.90525 1.24926 0.96535 0.95262 0.96831 1.70023 1.21855 1.22809 1.35493 0.86306 0.81455 0.78321 0.79954 1.19887 1.20928 1.19761 1.23552 0.92824 1.01711 0.84834 1.21278 1.01305 0.97313 0.99564 1.21707 1.01967 1.02995 0.97154 1.23589 0.97607 0.93163 1.01365 1.83993 1.50781 1.39678 1.32932 1.21268 0.96694 0.90653 0.91114 1.20618 1.03167 1.03667 0.88454 0.91426 0.91690 0.90454 0.88782 0.88514 0.89665 0.90527 0.90158 0.92110 0.83731 0.85223 0.79956 0.89484 0.90471 0.88592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 37.16 0.38 -0.93 16 2 C 0.13 1.11 6.74 -4.04 -0.03 1.08 16 3 N -0.36 -4.98 3.58 -56.59 -0.20 -5.18 16 4 N -0.30 -4.85 12.50 33.90 0.42 -4.42 16 5 C 0.12 2.11 7.27 -82.01 -0.60 1.51 16 6 C -0.08 -1.15 10.28 36.00 0.37 -0.78 16 7 C -0.25 -4.80 6.00 -105.08 -0.63 -5.43 16 8 C 0.54 12.05 7.09 34.41 0.24 12.30 16 9 O -0.51 -12.45 16.37 -19.29 -0.32 -12.77 16 10 O -0.34 -8.35 9.85 -43.44 -0.43 -8.77 16 11 C 0.30 7.92 2.42 -29.03 -0.07 7.85 16 12 H 0.08 2.19 7.16 -51.93 -0.37 1.81 16 13 C -0.53 -14.54 8.89 -34.44 -0.31 -14.85 16 14 H 0.08 2.07 7.81 -52.49 -0.41 1.66 16 15 C 0.07 1.88 5.30 -17.82 -0.09 1.79 16 16 N -0.87 -23.72 10.49 55.43 0.58 -23.14 16 17 Si 0.91 20.74 29.54 -169.99 -5.02 15.72 16 18 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.02 0.57 5.66 -35.63 -0.20 0.37 16 22 C -0.18 -4.38 9.04 -39.71 -0.36 -4.74 16 23 C -0.22 -4.70 10.91 -39.70 -0.43 -5.13 16 24 C -0.09 -1.85 12.09 29.42 0.36 -1.49 16 25 O -0.18 -4.36 10.63 2.05 0.02 -4.33 16 26 C 0.13 2.04 7.01 -81.59 -0.57 1.47 16 27 C -0.10 -1.19 9.70 36.00 0.35 -0.85 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.59 7.64 -51.93 -0.40 0.19 16 32 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.08 1.29 8.01 -51.93 -0.42 0.88 16 36 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.14 3.72 7.51 -52.48 -0.39 3.33 16 38 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 39 H 0.18 2.84 8.06 -52.49 -0.42 2.42 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.08 0.66 7.71 -51.92 -0.40 0.26 16 42 H 0.10 1.30 7.96 -51.93 -0.41 0.89 16 LS Contribution 368.12 15.07 5.55 5.55 Total: -1.00 -33.45 368.12 -6.73 -40.18 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -5.74 Total: 5.04 kcal Atomic # 6 Polarization: -6.27 SS G_CDS: -1.59 Total: -7.86 kcal Atomic # 7 Polarization: -33.54 SS G_CDS: 0.80 Total: -32.74 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -0.72 Total: -25.88 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.45 -6.73 -40.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.931 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds