Wall clock time and date at job start Tue Mar 31 2020 13:03:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47188 * 2 1 4 4 N 1.39926 * 125.74536 * 90.02344 * 3 2 1 5 5 C 1.30432 * 108.91818 * 180.02562 * 4 3 2 6 6 C 1.50694 * 125.99149 * 180.02562 * 5 4 3 7 7 C 1.41339 * 108.01463 * 359.97438 * 5 4 3 8 8 C 1.47286 * 126.43220 * 180.02562 * 7 5 4 9 9 O 1.21527 * 120.00110 * 90.02198 * 8 7 5 10 10 O 1.34750 * 119.99899 * 270.03155 * 8 7 5 11 11 C 1.45202 * 116.99737 * 179.97438 * 10 8 7 12 12 H 1.09004 * 109.47201 * 30.00161 * 11 10 8 13 13 C 1.50702 * 109.46885 * 149.99873 * 11 10 8 14 14 H 1.08002 * 120.00299 * 0.02562 * 13 11 10 15 15 C 1.37884 * 119.99942 * 179.72213 * 13 11 10 16 16 N 1.31514 * 119.99698 * 0.28408 * 15 13 11 17 17 Si 1.86794 * 119.99837 * 180.27476 * 15 13 11 18 18 H 1.48504 * 109.47196 * 60.00645 * 17 15 13 19 19 H 1.48504 * 109.46887 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47679 * 300.00280 * 17 15 13 21 21 C 1.50700 * 109.47358 * 269.99976 * 11 10 8 22 22 C 1.34511 * 125.79031 * 144.71900 * 21 11 10 23 23 C 1.41379 * 106.84521 * 179.89176 * 22 21 11 24 24 C 1.34520 * 106.83536 * 0.36719 * 23 22 21 25 25 O 1.34296 * 108.42315 * 359.77591 * 24 23 22 26 26 C 1.34226 * 125.73847 * 270.34031 * 3 2 1 27 27 C 1.50698 * 126.30019 * 359.97438 * 26 3 2 28 28 H 1.09005 * 109.47472 * 300.00433 * 1 2 3 29 29 H 1.08998 * 109.47017 * 60.00133 * 1 2 3 30 30 H 1.08994 * 109.47203 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47485 * 239.99692 * 2 1 3 32 32 H 1.08999 * 109.46820 * 119.99357 * 2 1 3 33 33 H 1.09002 * 109.47032 * 269.96802 * 6 5 4 34 34 H 1.08995 * 109.47770 * 29.97035 * 6 5 4 35 35 H 1.08999 * 109.47351 * 149.97066 * 6 5 4 36 36 H 0.97005 * 119.99651 * 179.97438 * 16 15 13 37 37 H 1.08003 * 126.57938 * 0.02562 * 22 21 11 38 38 H 1.07992 * 126.58428 * 180.16419 * 23 22 21 39 39 H 1.07999 * 125.78572 * 179.75417 * 24 23 22 40 40 H 1.08998 * 109.47136 * 270.22256 * 27 26 3 41 41 H 1.09007 * 109.46816 * 30.22321 * 27 26 3 42 42 H 1.09000 * 109.47374 * 150.22172 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 7 2.2913 2.1518 1.1357 5 6 2.7068 3.3291 0.7581 6 6 3.1077 4.4608 1.6688 7 6 2.7162 3.3568 -0.6550 8 6 3.1169 4.4910 -1.5049 9 8 4.2744 4.6079 -1.8562 10 8 2.2001 5.3991 -1.8929 11 6 2.6664 6.4906 -2.7293 12 1 3.5092 6.1521 -3.3319 13 6 1.5498 6.9414 -3.6355 14 1 0.5860 6.4564 -3.5874 15 6 1.7568 7.9773 -4.5217 16 7 2.9303 8.5681 -4.5800 17 14 0.3705 8.5411 -5.6395 18 1 -0.7759 8.9989 -4.8141 19 1 0.8460 9.6606 -6.4915 20 1 -0.0604 7.4117 -6.5021 21 6 3.1015 7.6406 -1.8580 22 6 4.1255 8.4755 -2.1107 23 6 4.1748 9.3988 -1.0412 24 6 3.1831 9.0679 -0.1947 25 8 2.5364 8.0023 -0.6945 26 6 2.2736 2.1226 -1.0895 27 6 2.1112 1.6871 -2.5230 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8899 32 1 1.8932 -0.5137 0.8900 33 1 2.2354 5.0763 1.8890 34 1 3.5099 4.0552 2.5971 35 1 3.8676 5.0696 1.1790 36 1 3.0760 9.2966 -5.2037 37 1 4.7824 8.4474 -2.9675 38 1 4.8763 10.2115 -0.9244 39 1 2.9473 9.5732 0.7302 40 1 3.0397 1.2363 -2.8732 41 1 1.3043 0.9573 -2.5918 42 1 1.8718 2.5526 -3.1408 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646914583.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:05 Heat of formation + Delta-G solvation = -19.898345 kcal Electronic energy + Delta-G solvation = -27134.341105 eV Core-core repulsion = 23275.299522 eV Total energy + Delta-G solvation = -3859.041583 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.14623 -42.60236 -40.85722 -37.46352 -36.01737 -35.28065 -33.51978 -33.49177 -32.02404 -31.43010 -29.16015 -28.51528 -28.23510 -25.53983 -24.42961 -23.18384 -22.32411 -21.47179 -20.79368 -20.47727 -19.12066 -18.52971 -18.29770 -17.66979 -17.04341 -16.63662 -16.48645 -16.31497 -16.26041 -15.30445 -15.11183 -14.67323 -14.59099 -14.38896 -14.20587 -13.94432 -13.79334 -13.52795 -13.49766 -13.45989 -13.16810 -13.14044 -13.00015 -12.95234 -12.78475 -12.72946 -12.29789 -12.21338 -12.03012 -11.89790 -11.46856 -11.35486 -10.78987 -10.47251 -10.22198 -9.69173 -9.08116 -8.20682 -6.51076 0.55150 1.09624 1.12942 1.23159 1.34672 1.41406 1.45129 1.52583 2.00937 2.18126 2.42672 2.47447 3.03230 3.37082 3.45929 3.80251 3.99589 4.06214 4.07395 4.24033 4.28236 4.36052 4.43879 4.54019 4.60102 4.62334 4.63163 4.67941 4.73972 4.77620 4.86708 4.94053 4.98546 5.18877 5.23918 5.33202 5.40026 5.43930 5.49370 5.67326 5.83990 5.90280 5.96867 6.48754 6.50100 6.59549 6.90985 7.20606 8.74619 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.014006 B = 0.004441 C = 0.003697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.652964 B = 6302.807008 C = 7571.381719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.114 3.886 3 N -0.349 5.349 4 N -0.308 5.308 5 C 0.110 3.890 6 C -0.075 4.075 7 C -0.306 4.306 8 C 0.547 3.453 9 O -0.541 6.541 10 O -0.350 6.350 11 C 0.301 3.699 12 H 0.043 0.957 13 C -0.556 4.556 14 H 0.072 0.928 15 C 0.027 3.973 16 N -0.889 5.889 17 Si 0.980 3.020 18 H -0.272 1.272 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.010 4.010 22 C -0.188 4.188 23 C -0.229 4.229 24 C -0.070 4.070 25 O -0.195 6.195 26 C 0.147 3.853 27 C -0.101 4.101 28 H 0.047 0.953 29 H 0.058 0.942 30 H 0.110 0.890 31 H 0.127 0.873 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.102 0.898 35 H 0.059 0.941 36 H 0.271 0.729 37 H 0.126 0.874 38 H 0.165 0.835 39 H 0.240 0.760 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.489 -13.791 8.307 16.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.005 4.005 3 N -0.129 5.129 4 N -0.130 5.130 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.319 4.319 8 C 0.391 3.609 9 O -0.431 6.431 10 O -0.265 6.265 11 C 0.247 3.753 12 H 0.060 0.940 13 C -0.593 4.593 14 H 0.091 0.909 15 C -0.176 4.176 16 N -0.523 5.523 17 Si 0.802 3.198 18 H -0.197 1.197 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.061 4.061 22 C -0.208 4.208 23 C -0.248 4.248 24 C -0.136 4.136 25 O -0.092 6.092 26 C 0.014 3.986 27 C -0.159 4.159 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.129 0.871 31 H 0.145 0.855 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.121 0.879 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.183 0.817 39 H 0.256 0.744 40 H 0.123 0.877 41 H 0.136 0.864 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.605 -14.651 9.225 17.684 hybrid contribution 0.213 1.602 -1.536 2.230 sum -3.391 -13.048 7.688 15.520 Atomic orbital electron populations 1.22191 0.93041 1.04811 1.02421 1.22299 0.96222 0.75021 1.06930 1.48716 1.49098 1.13192 1.01876 1.76976 1.24125 1.03650 1.08272 1.22527 0.96659 0.95006 0.91441 1.20290 1.02244 0.92870 0.97939 1.19206 1.24360 0.94535 0.93756 1.20636 0.82958 0.81110 0.76237 1.90752 1.21306 1.76239 1.54824 1.86710 1.41346 1.35530 1.62964 1.18814 0.96424 0.76090 0.83927 0.93967 1.21088 0.98307 1.20338 1.19533 0.90945 1.25792 0.99030 0.94920 0.97872 1.70159 1.23463 1.22860 1.35841 0.85288 0.78207 0.78228 0.78039 1.19682 1.20080 1.18514 1.23340 0.94198 1.02454 0.86076 1.21339 1.00868 0.98426 1.00131 1.22051 1.03286 1.03432 0.95990 1.24669 0.95794 0.90981 1.02180 1.83966 1.51519 1.41255 1.32485 1.21670 0.94493 0.89570 0.92893 1.20773 1.05611 1.03778 0.85743 0.93351 0.92258 0.87141 0.85473 0.87111 0.89163 0.87933 0.92184 0.91959 0.85620 0.81727 0.74432 0.87685 0.86367 0.90929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 10.24 71.98 0.74 -1.30 16 2 C 0.11 1.59 6.74 86.38 0.58 2.17 16 3 N -0.35 -9.03 3.58 -332.95 -1.19 -10.22 16 4 N -0.31 -9.70 12.50 -46.66 -0.58 -10.28 16 5 C 0.11 3.86 7.27 43.53 0.32 4.18 16 6 C -0.07 -2.28 10.28 71.23 0.73 -1.55 16 7 C -0.31 -11.91 6.00 -20.16 -0.12 -12.03 16 8 C 0.55 25.99 7.09 70.20 0.50 26.49 16 9 O -0.54 -28.49 16.37 19.75 0.32 -28.16 16 10 O -0.35 -18.29 9.85 -53.91 -0.53 -18.83 16 11 C 0.30 17.08 2.42 29.10 0.07 17.15 16 12 H 0.04 2.63 7.16 -2.38 -0.02 2.61 16 13 C -0.56 -31.88 8.89 25.60 0.23 -31.65 16 14 H 0.07 4.07 7.81 -2.91 -0.02 4.05 16 15 C 0.03 1.50 5.30 84.66 0.45 1.95 16 16 N -0.89 -50.17 10.49 21.45 0.23 -49.94 16 17 Si 0.98 42.84 29.54 68.60 2.03 44.86 16 18 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 19 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 21 C -0.01 -0.56 5.66 24.83 0.14 -0.42 16 22 C -0.19 -9.74 9.04 22.19 0.20 -9.54 16 23 C -0.23 -9.60 10.91 22.19 0.24 -9.36 16 24 C -0.07 -2.75 12.09 66.97 0.81 -1.94 16 25 O -0.19 -9.69 10.63 1.08 0.01 -9.68 16 26 C 0.15 4.42 7.01 42.17 0.30 4.71 16 27 C -0.10 -2.27 9.70 71.24 0.69 -1.58 16 28 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.13 1.00 7.64 -2.39 -0.02 0.99 16 32 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.10 2.49 8.14 -2.39 -0.02 2.47 16 35 H 0.06 2.04 8.01 -2.39 -0.02 2.02 16 36 H 0.27 14.42 8.31 -92.70 -0.77 13.65 16 37 H 0.13 6.88 7.51 -2.91 -0.02 6.85 16 38 H 0.17 5.60 8.06 -2.91 -0.02 5.58 16 39 H 0.24 6.38 8.06 -2.91 -0.02 6.36 16 40 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.12 1.64 7.71 -2.38 -0.02 1.62 16 42 H 0.07 2.01 7.96 -2.39 -0.02 2.00 16 Total: -1.00 -77.96 368.12 7.18 -70.78 By element: Atomic # 1 Polarization: 23.16 SS G_CDS: 1.03 Total: 24.19 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 5.87 Total: -12.71 kcal Atomic # 7 Polarization: -68.89 SS G_CDS: -1.55 Total: -70.44 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -0.20 Total: -56.67 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -77.96 7.18 -70.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646914583.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.877 kcal (2) G-P(sol) polarization free energy of solvation -77.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds