Wall clock time and date at job start Tue Mar 31 2020 13:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46867 * 2 1 4 4 C 1.46418 * 119.23384 * 270.14047 * 3 2 1 5 5 C 1.53247 * 109.13503 * 151.12763 * 4 3 2 6 6 H 1.09003 * 109.61984 * 295.37956 * 5 4 3 7 7 O 1.45195 * 109.62241 * 175.00713 * 5 4 3 8 8 C 1.34707 * 116.99672 * 150.36899 * 7 5 4 9 9 O 1.21466 * 120.00151 * 0.02562 * 8 7 5 10 10 C 1.47768 * 119.99999 * 179.97438 * 8 7 5 11 11 C 1.39974 * 120.03180 * 0.02562 * 10 8 7 12 12 C 1.38311 * 120.35865 * 179.97438 * 11 10 8 13 13 C 1.37763 * 120.41459 * 359.97438 * 12 11 10 14 14 C 1.40749 * 120.05115 * 0.03453 * 13 12 11 15 15 C 1.41440 * 120.17833 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99547 * 334.71906 * 15 14 13 17 17 C 1.39938 * 120.00255 * 154.71235 * 15 14 13 18 18 N 1.30824 * 119.99770 * 342.80792 * 17 15 14 19 19 Si 1.86801 * 119.99945 * 162.80475 * 17 15 14 20 20 H 1.48503 * 109.47045 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47069 * 120.00305 * 19 17 15 22 22 H 1.48495 * 109.47213 * 240.00169 * 19 17 15 23 23 C 1.39046 * 120.03400 * 179.97438 * 10 8 7 24 24 C 1.53238 * 108.71348 * 55.18794 * 5 4 3 25 25 N 1.46375 * 109.15793 * 304.61681 * 24 5 4 26 26 C 1.34125 * 119.33218 * 90.00121 * 3 2 1 27 27 O 1.21590 * 118.69848 * 0.54906 * 26 3 2 28 28 H 1.08999 * 109.46994 * 300.00014 * 1 2 3 29 29 H 1.09001 * 109.47463 * 60.00326 * 1 2 3 30 30 H 1.09007 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46994 * 239.99986 * 2 1 3 32 32 H 1.08995 * 109.47122 * 119.99943 * 2 1 3 33 33 H 1.09003 * 109.69744 * 31.13546 * 4 3 2 34 34 H 1.08996 * 109.37781 * 270.92676 * 4 3 2 35 35 H 1.08008 * 119.81951 * 359.97438 * 11 10 8 36 36 H 1.08001 * 119.79281 * 179.97438 * 12 11 10 37 37 H 1.07995 * 119.97588 * 180.02562 * 13 12 11 38 38 H 0.97006 * 119.99851 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.20253 * 359.75238 * 23 10 8 40 40 H 1.09000 * 109.52254 * 64.52475 * 24 5 4 41 41 H 1.09003 * 109.51952 * 184.71260 * 24 5 4 42 42 H 0.96997 * 119.33138 * 209.05874 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2537 2.0565 -1.2777 5 6 2.0455 3.5637 -1.0952 6 1 1.0034 3.7615 -0.8437 7 8 2.3903 4.2559 -2.3240 8 6 1.7365 5.4049 -2.5828 9 8 0.9016 5.8175 -1.8030 10 6 2.0359 6.1640 -3.8147 11 6 2.9983 5.6895 -4.7135 12 6 3.2834 6.3943 -5.8689 13 6 2.6236 7.5708 -6.1490 14 6 1.6528 8.0640 -5.2572 15 6 0.9734 9.2713 -5.5423 16 1 1.4352 10.0141 -6.1760 17 6 -0.2971 9.5033 -5.0036 18 7 -0.9980 8.5062 -4.5281 19 14 -0.9922 11.2367 -4.9633 20 1 -0.0097 12.1780 -5.5581 21 1 -2.2551 11.2818 -5.7433 22 1 -1.2648 11.6282 -3.5571 23 6 1.3610 7.3498 -4.0828 24 6 2.9505 4.0509 0.0414 25 7 2.6730 3.2670 1.2460 26 6 2.2373 2.0007 1.1693 27 8 2.0324 1.3904 2.2008 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5559 1.6804 -2.0260 34 1 3.2762 1.8669 -1.6039 35 1 3.5211 4.7680 -4.5037 36 1 4.0280 6.0200 -6.5559 37 1 2.8516 8.1152 -7.0534 38 1 -1.8786 8.6671 -4.1543 39 1 0.6142 7.7174 -3.3947 40 1 3.9946 3.9230 -0.2441 41 1 2.7522 5.1045 0.2387 42 1 2.8073 3.6713 2.1174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649208372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:22 Heat of formation + Delta-G solvation = -91.933165 kcal Electronic energy + Delta-G solvation = -26277.892816 eV Core-core repulsion = 22415.727570 eV Total energy + Delta-G solvation = -3862.165247 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03340 -39.87086 -37.62959 -36.63452 -35.84277 -35.28550 -33.84075 -31.39435 -30.56603 -29.69041 -29.50064 -26.18528 -25.50523 -24.27721 -23.60248 -21.93239 -21.09183 -20.03289 -19.35012 -18.14597 -17.60967 -17.49937 -16.70447 -16.08397 -15.80176 -15.45451 -15.02450 -14.99364 -14.77571 -14.41218 -14.12317 -13.94978 -13.69958 -13.34115 -13.26490 -12.77842 -12.69052 -12.51235 -12.27324 -12.06873 -11.77276 -11.39798 -11.29201 -11.19568 -11.18656 -10.87783 -10.64971 -10.59491 -10.35482 -10.19622 -9.83042 -9.64918 -9.34181 -9.31864 -8.86128 -7.86874 -7.65887 -6.91801 -4.53448 1.81133 2.21065 2.68061 2.97293 3.01527 3.04118 3.07001 3.17270 3.39654 3.56624 3.83526 4.33534 4.41736 4.49393 4.72912 4.81253 5.04596 5.14881 5.22310 5.26592 5.35957 5.43112 5.46362 5.53918 5.64707 5.75125 6.00226 6.03412 6.10816 6.27843 6.41125 6.50905 6.72806 6.82909 6.85467 6.87951 7.07127 7.19503 7.56073 7.56952 7.63280 7.80448 7.99482 8.32301 8.35001 8.38731 8.66658 8.69224 10.03547 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002930 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.344009 B = 9555.088072 C =10121.518811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.129 3.871 3 N -0.620 5.620 4 C 0.118 3.882 5 C 0.060 3.940 6 H 0.097 0.903 7 O -0.340 6.340 8 C 0.513 3.487 9 O -0.511 6.511 10 C -0.116 4.116 11 C -0.194 4.194 12 C -0.103 4.103 13 C -0.200 4.200 14 C 0.095 3.905 15 C -0.459 4.459 16 H 0.084 0.916 17 C 0.073 3.927 18 N -0.787 5.787 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.270 1.270 23 C -0.087 4.087 24 C 0.094 3.906 25 N -0.730 5.730 26 C 0.710 3.290 27 O -0.597 6.597 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.285 0.715 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 -10.671 5.028 12.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 N -0.359 5.359 4 C -0.006 4.006 5 C 0.003 3.997 6 H 0.115 0.885 7 O -0.256 6.256 8 C 0.360 3.640 9 O -0.400 6.400 10 C -0.117 4.117 11 C -0.214 4.214 12 C -0.121 4.121 13 C -0.220 4.220 14 C 0.093 3.907 15 C -0.487 4.487 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.411 5.411 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.199 1.199 22 H -0.195 1.195 23 C -0.107 4.107 24 C -0.031 4.031 25 N -0.389 5.389 26 C 0.411 3.589 27 O -0.476 6.476 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.107 0.893 33 H 0.112 0.888 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.402 -11.016 5.717 13.169 hybrid contribution -0.489 1.045 0.260 1.183 sum 3.914 -9.971 5.977 12.266 Atomic orbital electron populations 1.22176 0.95907 1.02269 1.02604 1.21356 0.94337 0.80287 1.03361 1.46779 1.70220 1.14922 1.03996 1.21458 1.03250 0.89796 0.86058 1.22835 1.01166 0.91709 0.84035 0.88487 1.86666 1.62523 1.36982 1.39417 1.22026 0.77478 0.78004 0.86511 1.90786 1.32582 1.67811 1.48781 1.18773 1.02950 0.97399 0.92579 1.20554 1.02242 1.01535 0.97051 1.20519 0.99328 0.95825 0.96430 1.21214 1.03313 0.97658 0.99771 1.17547 0.91009 0.92493 0.89657 1.19616 1.00177 1.02000 1.26947 0.89836 1.25969 0.96851 0.98963 0.92819 1.69771 1.10671 1.32360 1.28345 0.86209 0.79203 0.82043 0.79046 1.18272 1.19854 1.19535 1.21667 0.98723 0.92846 0.97414 1.21894 0.99646 0.96894 0.84639 1.44792 1.72232 1.12075 1.09805 1.15468 0.78073 0.81555 0.83848 1.90941 1.59684 1.64434 1.32577 0.92098 0.92488 0.91419 0.90291 0.89320 0.88817 0.90185 0.87795 0.88438 0.88263 0.90408 0.84667 0.90401 0.88970 0.74325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.23 37.16 0.38 -1.23 16 2 C 0.13 1.24 6.03 -4.04 -0.02 1.22 16 3 N -0.62 -7.23 2.82 -179.74 -0.51 -7.74 16 4 C 0.12 1.27 6.17 -3.96 -0.02 1.25 16 5 C 0.06 0.81 2.70 -26.48 -0.07 0.74 16 6 H 0.10 1.50 7.17 -51.93 -0.37 1.13 16 7 O -0.34 -5.50 9.13 -40.51 -0.37 -5.87 16 8 C 0.51 10.39 7.88 34.63 0.27 10.67 16 9 O -0.51 -11.44 15.60 -19.24 -0.30 -11.74 16 10 C -0.12 -2.58 5.87 -105.05 -0.62 -3.19 16 11 C -0.19 -3.92 9.62 -38.90 -0.37 -4.30 16 12 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 13 C -0.20 -4.46 9.78 -38.81 -0.38 -4.84 16 14 C 0.10 2.38 5.57 -106.87 -0.59 1.79 16 15 C -0.46 -11.43 9.05 -37.73 -0.34 -11.78 16 16 H 0.08 1.98 7.90 -52.48 -0.41 1.56 16 17 C 0.07 1.76 5.15 -17.34 -0.09 1.67 16 18 N -0.79 -19.86 10.96 55.55 0.61 -19.25 16 19 Si 0.91 17.96 29.59 -169.99 -5.03 12.93 16 20 H -0.26 -5.01 7.11 56.52 0.40 -4.61 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 23 C -0.09 -2.18 8.24 -38.43 -0.32 -2.49 16 24 C 0.09 1.11 6.86 -3.99 -0.03 1.09 16 25 N -0.73 -8.69 5.58 -65.53 -0.37 -9.06 16 26 C 0.71 9.83 8.18 -88.07 -0.72 9.11 16 27 O -0.60 -10.02 16.49 5.29 0.09 -9.93 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.08 0.56 8.05 -51.93 -0.42 0.14 16 32 H 0.09 0.93 7.30 -51.93 -0.38 0.55 16 33 H 0.09 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.84 7.59 -52.48 -0.40 1.44 16 36 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 37 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 39 H 0.14 3.64 5.76 -52.49 -0.30 3.34 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.42 4.34 8.88 -40.82 -0.36 3.97 16 LS Contribution 356.82 15.07 5.38 5.38 Total: -1.00 -29.42 356.82 -9.41 -38.83 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: -5.58 Total: 9.23 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -3.32 Total: -2.78 kcal Atomic # 7 Polarization: -35.78 SS G_CDS: -0.26 Total: -36.04 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.58 Total: -27.54 kcal Atomic # 14 Polarization: 17.96 SS G_CDS: -5.03 Total: 12.93 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.42 -9.41 -38.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649208372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.108 kcal (2) G-P(sol) polarization free energy of solvation -29.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds