Wall clock time and date at job start Tue Mar 31 2020 13:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46500 * 109.46867 * 2 1 4 4 C 1.46418 * 119.23384 * 270.14047 * 3 2 1 5 5 C 1.53247 * 109.13503 * 151.12763 * 4 3 2 6 6 H 1.09003 * 109.61984 * 295.37956 * 5 4 3 7 7 O 1.45195 * 109.62241 * 175.00713 * 5 4 3 8 8 C 1.34707 * 116.99672 * 150.36899 * 7 5 4 9 9 O 1.21466 * 120.00151 * 0.02562 * 8 7 5 10 10 C 1.47768 * 119.99999 * 179.97438 * 8 7 5 11 11 C 1.39974 * 120.03180 * 0.02562 * 10 8 7 12 12 C 1.38311 * 120.35865 * 179.97438 * 11 10 8 13 13 C 1.37763 * 120.41459 * 359.97438 * 12 11 10 14 14 C 1.40749 * 120.05115 * 0.03453 * 13 12 11 15 15 C 1.41440 * 120.17833 * 180.02562 * 14 13 12 16 16 H 1.08007 * 119.99547 * 334.71906 * 15 14 13 17 17 C 1.39938 * 120.00255 * 154.71235 * 15 14 13 18 18 N 1.30824 * 119.99770 * 342.80792 * 17 15 14 19 19 Si 1.86801 * 119.99945 * 162.80475 * 17 15 14 20 20 H 1.48503 * 109.47045 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47069 * 120.00305 * 19 17 15 22 22 H 1.48495 * 109.47213 * 240.00169 * 19 17 15 23 23 C 1.39046 * 120.03400 * 179.97438 * 10 8 7 24 24 C 1.53238 * 108.71348 * 55.18794 * 5 4 3 25 25 N 1.46375 * 109.15793 * 304.61681 * 24 5 4 26 26 C 1.34125 * 119.33218 * 90.00121 * 3 2 1 27 27 O 1.21590 * 118.69848 * 0.54906 * 26 3 2 28 28 H 1.08999 * 109.46994 * 300.00014 * 1 2 3 29 29 H 1.09001 * 109.47463 * 60.00326 * 1 2 3 30 30 H 1.09007 * 109.47174 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46994 * 239.99986 * 2 1 3 32 32 H 1.08995 * 109.47122 * 119.99943 * 2 1 3 33 33 H 1.09003 * 109.69744 * 31.13546 * 4 3 2 34 34 H 1.08996 * 109.37781 * 270.92676 * 4 3 2 35 35 H 1.08008 * 119.81951 * 359.97438 * 11 10 8 36 36 H 1.08001 * 119.79281 * 179.97438 * 12 11 10 37 37 H 1.07995 * 119.97588 * 180.02562 * 13 12 11 38 38 H 0.97006 * 119.99851 * 179.97438 * 18 17 15 39 39 H 1.07996 * 120.20253 * 359.75238 * 23 10 8 40 40 H 1.09000 * 109.52254 * 64.52475 * 24 5 4 41 41 H 1.09003 * 109.51952 * 184.71260 * 24 5 4 42 42 H 0.96997 * 119.33138 * 209.05874 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2537 2.0565 -1.2777 5 6 2.0455 3.5637 -1.0952 6 1 1.0034 3.7615 -0.8437 7 8 2.3903 4.2559 -2.3240 8 6 1.7365 5.4049 -2.5828 9 8 0.9016 5.8175 -1.8030 10 6 2.0359 6.1640 -3.8147 11 6 2.9983 5.6895 -4.7135 12 6 3.2834 6.3943 -5.8689 13 6 2.6236 7.5708 -6.1490 14 6 1.6528 8.0640 -5.2572 15 6 0.9734 9.2713 -5.5423 16 1 1.4352 10.0141 -6.1760 17 6 -0.2971 9.5033 -5.0036 18 7 -0.9980 8.5062 -4.5281 19 14 -0.9922 11.2367 -4.9633 20 1 -0.0097 12.1780 -5.5581 21 1 -2.2551 11.2818 -5.7433 22 1 -1.2648 11.6282 -3.5571 23 6 1.3610 7.3498 -4.0828 24 6 2.9505 4.0509 0.0414 25 7 2.6730 3.2670 1.2460 26 6 2.2373 2.0007 1.1693 27 8 2.0324 1.3904 2.2008 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 1.5559 1.6804 -2.0260 34 1 3.2762 1.8669 -1.6039 35 1 3.5211 4.7680 -4.5037 36 1 4.0280 6.0200 -6.5559 37 1 2.8516 8.1152 -7.0534 38 1 -1.8786 8.6671 -4.1543 39 1 0.6142 7.7174 -3.3947 40 1 3.9946 3.9230 -0.2441 41 1 2.7522 5.1045 0.2387 42 1 2.8073 3.6713 2.1174 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649208372.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:21 Heat of formation + Delta-G solvation = -108.789284 kcal Electronic energy + Delta-G solvation = -26278.623753 eV Core-core repulsion = 22415.727570 eV Total energy + Delta-G solvation = -3862.896183 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16484 -41.27772 -39.26182 -38.02914 -36.90961 -36.44230 -35.59752 -32.53978 -31.96848 -31.35850 -30.69329 -27.29220 -27.11267 -25.55509 -24.76297 -23.09608 -22.79683 -21.57542 -20.36898 -19.72916 -18.72564 -18.67140 -18.08288 -17.69519 -16.99213 -16.85057 -16.52781 -16.36944 -15.99690 -15.49217 -15.30151 -15.13770 -15.03014 -14.76533 -14.49103 -14.32338 -13.97138 -13.65134 -13.51685 -13.30062 -12.98795 -12.88346 -12.81937 -12.58034 -12.49604 -12.20245 -12.09124 -11.96047 -11.91494 -11.53010 -11.38045 -11.25885 -11.10094 -10.37294 -9.76356 -9.60774 -9.42029 -8.68487 -6.39305 0.11260 0.97663 1.08637 1.38365 1.44842 1.53527 1.76527 1.90424 1.97140 2.19043 2.58793 2.72731 3.32594 3.36774 3.63788 3.65211 3.88981 4.10134 4.22286 4.30385 4.39675 4.44767 4.51701 4.56467 4.63002 4.65868 4.71044 4.87784 4.90246 5.05990 5.13675 5.17046 5.23321 5.28486 5.29353 5.45642 5.56473 5.82199 5.90520 5.92348 6.02538 6.24920 6.54063 6.57633 6.74750 6.87304 6.89558 7.35646 8.28913 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019435 B = 0.002930 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.344009 B = 9555.088072 C =10121.518811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.125 3.875 3 N -0.618 5.618 4 C 0.123 3.877 5 C 0.055 3.945 6 H 0.073 0.927 7 O -0.323 6.323 8 C 0.520 3.480 9 O -0.540 6.540 10 C -0.127 4.127 11 C -0.174 4.174 12 C -0.100 4.100 13 C -0.202 4.202 14 C 0.065 3.935 15 C -0.494 4.494 16 H 0.086 0.914 17 C 0.031 3.969 18 N -0.827 5.827 19 Si 0.980 3.020 20 H -0.252 1.252 21 H -0.266 1.266 22 H -0.271 1.271 23 C -0.121 4.121 24 C 0.099 3.901 25 N -0.724 5.724 26 C 0.701 3.299 27 O -0.632 6.632 28 H 0.031 0.969 29 H 0.056 0.944 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.110 0.890 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.287 0.713 39 H 0.104 0.896 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -12.153 3.781 14.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.004 3.996 3 N -0.356 5.356 4 C 0.001 3.999 5 C -0.002 4.002 6 H 0.091 0.909 7 O -0.238 6.238 8 C 0.368 3.632 9 O -0.431 6.431 10 C -0.129 4.129 11 C -0.193 4.193 12 C -0.118 4.118 13 C -0.221 4.221 14 C 0.063 3.937 15 C -0.523 4.523 16 H 0.104 0.896 17 C -0.183 4.183 18 N -0.453 5.453 19 Si 0.801 3.199 20 H -0.175 1.175 21 H -0.191 1.191 22 H -0.196 1.196 23 C -0.141 4.141 24 C -0.026 4.026 25 N -0.383 5.383 26 C 0.402 3.598 27 O -0.514 6.514 28 H 0.050 0.950 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.132 0.868 32 H 0.096 0.904 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.159 0.841 36 H 0.160 0.840 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 6.320 -12.516 4.441 14.707 hybrid contribution -0.945 1.320 0.648 1.748 sum 5.375 -11.196 5.088 13.421 Atomic orbital electron populations 1.22144 0.95967 1.03283 1.01129 1.21565 0.94258 0.79286 1.04540 1.46900 1.69592 1.15554 1.03578 1.21549 1.05193 0.87325 0.85868 1.23058 1.00285 0.93440 0.83396 0.90912 1.86599 1.61295 1.35231 1.40659 1.21712 0.77120 0.78719 0.85690 1.90780 1.33913 1.68829 1.49607 1.19006 1.03073 0.96887 0.93908 1.21016 1.00364 1.02060 0.95854 1.20986 0.99312 0.94568 0.96904 1.21529 1.02375 0.98570 0.99671 1.17885 0.92300 0.93172 0.90378 1.19871 1.01127 1.02806 1.28537 0.89631 1.26790 0.96885 1.02604 0.92045 1.69859 1.11150 1.34370 1.29930 0.85176 0.78629 0.77226 0.78855 1.17465 1.19101 1.19617 1.21459 1.00005 0.94919 0.97722 1.21879 1.00363 0.96341 0.83971 1.44746 1.71743 1.11601 1.10238 1.15706 0.78119 0.81857 0.84110 1.90916 1.61236 1.65328 1.33932 0.94951 0.92451 0.89232 0.86825 0.90355 0.87216 0.87710 0.84146 0.84032 0.86895 0.90277 0.87790 0.88142 0.89680 0.73635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.91 10.23 71.98 0.74 -2.18 16 2 C 0.13 2.13 6.03 86.38 0.52 2.65 16 3 N -0.62 -13.18 2.82 -841.22 -2.37 -15.55 16 4 C 0.12 2.28 6.17 86.48 0.53 2.81 16 5 C 0.06 1.40 2.70 30.76 0.08 1.48 16 6 H 0.07 2.25 7.17 -2.39 -0.02 2.23 16 7 O -0.32 -9.71 9.13 -56.17 -0.51 -10.23 16 8 C 0.52 20.88 7.88 70.34 0.55 21.43 16 9 O -0.54 -24.90 15.60 19.95 0.31 -24.58 16 10 C -0.13 -5.62 5.87 -20.14 -0.12 -5.73 16 11 C -0.17 -6.46 9.62 22.71 0.22 -6.24 16 12 C -0.10 -3.67 10.01 22.17 0.22 -3.45 16 13 C -0.20 -8.76 9.78 22.77 0.22 -8.54 16 14 C 0.06 3.31 5.57 -21.32 -0.12 3.19 16 15 C -0.49 -25.46 9.05 23.47 0.21 -25.25 16 16 H 0.09 4.17 7.90 -2.91 -0.02 4.14 16 17 C 0.03 1.57 5.15 85.25 0.44 2.01 16 18 N -0.83 -43.87 10.96 21.82 0.24 -43.63 16 19 Si 0.98 37.88 29.59 68.60 2.03 39.91 16 20 H -0.25 -9.27 7.11 99.48 0.71 -8.56 16 21 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.38 7.11 99.48 0.71 -9.67 16 23 C -0.12 -6.27 8.24 23.02 0.19 -6.08 16 24 C 0.10 2.19 6.86 86.48 0.59 2.78 16 25 N -0.72 -16.57 5.58 -479.87 -2.68 -19.25 16 26 C 0.70 18.81 8.18 179.46 1.47 20.28 16 27 O -0.63 -21.19 16.49 -4.00 -0.07 -21.26 16 28 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.11 1.17 8.05 -2.39 -0.02 1.15 16 32 H 0.08 1.54 7.30 -2.39 -0.02 1.52 16 33 H 0.11 1.73 8.07 -2.39 -0.02 1.72 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.14 4.20 7.59 -2.91 -0.02 4.18 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.96 16 37 H 0.11 4.49 8.06 -2.91 -0.02 4.46 16 38 H 0.29 14.00 8.30 -92.70 -0.77 13.23 16 39 H 0.10 5.98 5.76 -2.91 -0.02 5.96 16 40 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.42 8.60 8.88 -92.71 -0.82 7.78 16 Total: -1.00 -67.30 356.82 2.94 -64.36 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.23 Total: 31.06 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: 5.76 Total: -0.83 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -4.81 Total: -78.44 kcal Atomic # 8 Polarization: -55.80 SS G_CDS: -0.27 Total: -56.07 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Total: -67.30 2.94 -64.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649208372.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.428 kcal (2) G-P(sol) polarization free energy of solvation -67.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds