Wall clock time and date at job start Tue Mar 31 2020 13:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47146 * 2 1 4 4 C 1.46379 * 119.33336 * 89.99980 * 3 2 1 5 5 C 1.53231 * 109.15445 * 209.03822 * 4 3 2 6 6 H 1.09004 * 109.62463 * 64.42901 * 5 4 3 7 7 O 1.45205 * 109.62302 * 184.79612 * 5 4 3 8 8 C 1.34702 * 117.00215 * 210.00262 * 7 5 4 9 9 O 1.21465 * 119.99886 * 359.97438 * 8 7 5 10 10 C 1.47767 * 119.99783 * 180.02562 * 8 7 5 11 11 C 1.39959 * 120.03614 * 359.97438 * 10 8 7 12 12 C 1.38312 * 120.36085 * 180.02562 * 11 10 8 13 13 C 1.37765 * 120.41522 * 0.02562 * 12 11 10 14 14 C 1.40756 * 120.05008 * 359.97067 * 13 12 11 15 15 C 1.41437 * 120.17376 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99914 * 24.35976 * 15 14 13 17 17 C 1.39937 * 119.99757 * 204.35199 * 15 14 13 18 18 N 1.30830 * 120.00123 * 17.75007 * 17 15 14 19 19 Si 1.86799 * 120.00051 * 197.75171 * 17 15 14 20 20 H 1.48500 * 109.46945 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47237 * 120.00084 * 19 17 15 22 22 H 1.48500 * 109.47156 * 240.00417 * 19 17 15 23 23 C 1.39057 * 120.02746 * 179.72611 * 10 8 7 24 24 C 1.53243 * 108.56724 * 304.51885 * 5 4 3 25 25 N 1.46382 * 109.15188 * 55.47587 * 24 5 4 26 26 C 1.34138 * 119.32844 * 269.72829 * 3 2 1 27 27 O 1.21588 * 118.69838 * 359.42957 * 26 3 2 28 28 H 1.08999 * 109.47092 * 300.00116 * 1 2 3 29 29 H 1.09001 * 109.47118 * 60.00273 * 1 2 3 30 30 H 1.08996 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47092 * 239.99884 * 2 1 3 32 32 H 1.08999 * 109.47296 * 120.00239 * 2 1 3 33 33 H 1.09002 * 109.52136 * 328.94078 * 4 3 2 34 34 H 1.09001 * 109.52181 * 89.06896 * 4 3 2 35 35 H 1.08005 * 119.81962 * 359.97438 * 11 10 8 36 36 H 1.07995 * 119.79814 * 180.02562 * 12 11 10 37 37 H 1.07994 * 119.97537 * 179.97438 * 13 12 11 38 38 H 0.97001 * 119.99582 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.20719 * 359.97438 * 23 10 8 40 40 H 1.08999 * 109.52829 * 175.38580 * 24 5 4 41 41 H 1.09005 * 109.52053 * 295.58325 * 24 5 4 42 42 H 0.97002 * 119.32977 * 150.91841 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2573 2.0573 1.2761 5 6 2.0448 3.5639 1.0944 6 1 1.0020 3.7589 0.8440 7 8 2.3888 4.2566 2.3234 8 6 1.7266 5.3996 2.5871 9 8 0.8852 5.8067 1.8115 10 6 2.0247 6.1586 3.8194 11 6 2.9945 5.6903 4.7133 12 6 3.2785 6.3951 5.8690 13 6 2.6102 7.5655 6.1541 14 6 1.6316 8.0524 5.2673 15 6 0.9442 9.2541 5.5572 16 1 1.3968 9.9930 6.2018 17 6 -0.3221 9.4855 5.0086 18 7 -1.0187 8.4882 4.5271 19 14 -1.0181 11.2184 4.9636 20 1 -0.0408 12.1601 5.5666 21 1 -1.2798 11.6104 3.5554 22 1 -2.2870 11.2624 5.7337 23 6 1.3455 7.3416 4.0895 24 6 2.9506 4.0510 -0.0416 25 7 2.6740 3.2666 -1.2462 26 6 2.2426 1.9988 -1.1694 27 8 2.0426 1.3867 -2.2008 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5613 1.6789 2.0248 34 1 3.2804 1.8694 1.6018 35 1 3.5234 4.7731 4.4999 36 1 4.0289 6.0256 6.5522 37 1 2.8373 8.1099 7.0588 38 1 -1.8964 8.6488 4.1465 39 1 0.5995 7.7092 3.4005 40 1 2.7525 5.1044 -0.2393 41 1 3.9946 3.9230 0.2446 42 1 2.8085 3.6709 -2.1177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649208373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:26 Heat of formation + Delta-G solvation = -91.945274 kcal Electronic energy + Delta-G solvation = -26278.418500 eV Core-core repulsion = 22416.252728 eV Total energy + Delta-G solvation = -3862.165772 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03329 -39.86893 -37.62715 -36.63501 -35.84137 -35.28406 -33.84605 -31.39614 -30.56682 -29.69077 -29.49882 -26.18084 -25.50715 -24.27395 -23.59991 -21.93095 -21.09147 -20.03154 -19.35498 -18.14496 -17.60876 -17.49840 -16.70042 -16.08628 -15.79931 -15.45318 -15.02484 -14.99460 -14.77532 -14.41624 -14.12208 -13.94488 -13.70173 -13.34090 -13.26307 -12.77886 -12.69148 -12.50901 -12.26913 -12.06860 -11.77397 -11.39643 -11.29220 -11.19490 -11.18581 -10.87764 -10.64893 -10.59493 -10.35494 -10.19464 -9.83013 -9.64869 -9.33961 -9.31895 -8.86085 -7.86706 -7.66478 -6.92490 -4.53346 1.81407 2.21116 2.68057 2.97458 3.01326 3.04127 3.06910 3.17357 3.39798 3.56684 3.83200 4.33543 4.42235 4.49107 4.72866 4.81328 5.04776 5.14982 5.22439 5.26619 5.36182 5.43478 5.46365 5.53962 5.64709 5.75332 6.00415 6.03537 6.10971 6.28216 6.41284 6.51089 6.73013 6.83039 6.85736 6.87954 7.06875 7.19551 7.56299 7.56903 7.63568 7.80488 7.99500 8.32458 8.35055 8.38729 8.66639 8.68981 10.02757 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.002932 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.823352 B = 9547.616294 C =10114.690258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.129 3.871 3 N -0.620 5.620 4 C 0.117 3.883 5 C 0.060 3.940 6 H 0.098 0.902 7 O -0.340 6.340 8 C 0.513 3.487 9 O -0.511 6.511 10 C -0.115 4.115 11 C -0.195 4.195 12 C -0.102 4.102 13 C -0.201 4.201 14 C 0.095 3.905 15 C -0.458 4.458 16 H 0.084 0.916 17 C 0.073 3.927 18 N -0.786 5.786 19 Si 0.911 3.089 20 H -0.259 1.259 21 H -0.270 1.270 22 H -0.273 1.273 23 C -0.088 4.088 24 C 0.095 3.905 25 N -0.730 5.730 26 C 0.709 3.291 27 O -0.597 6.597 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.285 0.715 39 H 0.136 0.864 40 H 0.092 0.908 41 H 0.078 0.922 42 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -10.598 -5.060 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.007 3.993 3 N -0.359 5.359 4 C -0.006 4.006 5 C 0.003 3.997 6 H 0.116 0.884 7 O -0.256 6.256 8 C 0.360 3.640 9 O -0.400 6.400 10 C -0.116 4.116 11 C -0.215 4.215 12 C -0.121 4.121 13 C -0.221 4.221 14 C 0.093 3.907 15 C -0.487 4.487 16 H 0.102 0.898 17 C -0.146 4.146 18 N -0.410 5.410 19 Si 0.735 3.265 20 H -0.183 1.183 21 H -0.195 1.195 22 H -0.198 1.198 23 C -0.107 4.107 24 C -0.031 4.031 25 N -0.389 5.389 26 C 0.410 3.590 27 O -0.476 6.476 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.098 0.902 35 H 0.122 0.878 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.153 0.847 40 H 0.110 0.890 41 H 0.096 0.904 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 4.422 -10.946 -5.749 13.131 hybrid contribution -0.480 1.039 -0.262 1.174 sum 3.942 -9.906 -6.011 12.240 Atomic orbital electron populations 1.22172 0.95892 1.02263 1.02607 1.21356 0.94345 0.80270 1.03361 1.46772 1.70101 1.15040 1.04003 1.21451 1.03219 0.89837 0.86093 1.22835 1.01181 0.91685 0.84033 0.88437 1.86667 1.62107 1.37386 1.39436 1.22027 0.77568 0.77969 0.86460 1.90786 1.32403 1.67743 1.49025 1.18769 1.02822 0.97470 0.92588 1.20545 1.02095 1.01673 0.97158 1.20516 0.99280 0.95850 0.96408 1.21207 1.03176 0.97827 0.99841 1.17547 0.91038 0.92449 0.89675 1.19619 1.00387 1.02384 1.26283 0.89824 1.25977 0.96829 0.98966 0.92842 1.69777 1.10845 1.32359 1.28026 0.86211 0.79198 0.82045 0.79066 1.18260 1.19522 1.19847 1.21667 0.98793 0.92893 0.97396 1.21894 0.99636 0.96884 0.84641 1.44795 1.72371 1.11939 1.09805 1.15478 0.78055 0.81567 0.83860 1.90940 1.59743 1.64356 1.32598 0.92490 0.92098 0.91418 0.89312 0.90306 0.88855 0.90187 0.87807 0.88450 0.88276 0.90393 0.84675 0.88974 0.90401 0.74324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.24 37.16 0.38 -1.23 16 2 C 0.13 1.24 6.04 -4.04 -0.02 1.22 16 3 N -0.62 -7.24 2.81 -179.78 -0.51 -7.75 16 4 C 0.12 1.27 6.16 -3.99 -0.02 1.25 16 5 C 0.06 0.81 2.71 -26.49 -0.07 0.74 16 6 H 0.10 1.51 7.16 -51.93 -0.37 1.14 16 7 O -0.34 -5.51 9.13 -40.50 -0.37 -5.87 16 8 C 0.51 10.40 7.88 34.63 0.27 10.68 16 9 O -0.51 -11.45 15.59 -19.24 -0.30 -11.75 16 10 C -0.12 -2.57 5.87 -105.05 -0.62 -3.18 16 11 C -0.19 -3.95 9.62 -38.91 -0.37 -4.32 16 12 C -0.10 -2.06 10.01 -39.73 -0.40 -2.46 16 13 C -0.20 -4.48 9.78 -38.80 -0.38 -4.86 16 14 C 0.10 2.38 5.57 -106.87 -0.60 1.79 16 15 C -0.46 -11.42 9.05 -37.73 -0.34 -11.76 16 16 H 0.08 1.98 7.91 -52.49 -0.41 1.57 16 17 C 0.07 1.76 5.14 -17.34 -0.09 1.67 16 18 N -0.79 -19.81 10.96 55.55 0.61 -19.20 16 19 Si 0.91 17.94 29.59 -169.99 -5.03 12.91 16 20 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 C -0.09 -2.20 8.24 -38.42 -0.32 -2.52 16 24 C 0.09 1.12 6.86 -3.98 -0.03 1.09 16 25 N -0.73 -8.68 5.58 -65.52 -0.37 -9.05 16 26 C 0.71 9.83 8.18 -88.06 -0.72 9.11 16 27 O -0.60 -10.02 16.48 5.29 0.09 -9.93 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.93 7.29 -51.93 -0.38 0.55 16 32 H 0.08 0.56 8.06 -51.93 -0.42 0.14 16 33 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 34 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.10 1.84 7.59 -52.48 -0.40 1.44 16 36 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 37 H 0.10 2.04 8.06 -52.49 -0.42 1.62 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 39 H 0.14 3.64 5.75 -52.48 -0.30 3.34 16 40 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.42 4.33 8.88 -40.82 -0.36 3.97 16 LS Contribution 356.79 15.07 5.38 5.38 Total: -1.00 -29.41 356.79 -9.41 -38.82 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -5.58 Total: 9.25 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -3.33 Total: -2.80 kcal Atomic # 7 Polarization: -35.74 SS G_CDS: -0.26 Total: -36.00 kcal Atomic # 8 Polarization: -26.97 SS G_CDS: -0.58 Total: -27.56 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.41 -9.41 -38.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649208373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.124 kcal (2) G-P(sol) polarization free energy of solvation -29.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds