Wall clock time and date at job start Tue Mar 31 2020 13:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47146 * 2 1 4 4 C 1.46379 * 119.33336 * 89.99980 * 3 2 1 5 5 C 1.53231 * 109.15445 * 209.03822 * 4 3 2 6 6 H 1.09004 * 109.62463 * 64.42901 * 5 4 3 7 7 O 1.45205 * 109.62302 * 184.79612 * 5 4 3 8 8 C 1.34702 * 117.00215 * 210.00262 * 7 5 4 9 9 O 1.21465 * 119.99886 * 359.97438 * 8 7 5 10 10 C 1.47767 * 119.99783 * 180.02562 * 8 7 5 11 11 C 1.39959 * 120.03614 * 359.97438 * 10 8 7 12 12 C 1.38312 * 120.36085 * 180.02562 * 11 10 8 13 13 C 1.37765 * 120.41522 * 0.02562 * 12 11 10 14 14 C 1.40756 * 120.05008 * 359.97067 * 13 12 11 15 15 C 1.41437 * 120.17376 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99914 * 24.35976 * 15 14 13 17 17 C 1.39937 * 119.99757 * 204.35199 * 15 14 13 18 18 N 1.30830 * 120.00123 * 17.75007 * 17 15 14 19 19 Si 1.86799 * 120.00051 * 197.75171 * 17 15 14 20 20 H 1.48500 * 109.46945 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.47237 * 120.00084 * 19 17 15 22 22 H 1.48500 * 109.47156 * 240.00417 * 19 17 15 23 23 C 1.39057 * 120.02746 * 179.72611 * 10 8 7 24 24 C 1.53243 * 108.56724 * 304.51885 * 5 4 3 25 25 N 1.46382 * 109.15188 * 55.47587 * 24 5 4 26 26 C 1.34138 * 119.32844 * 269.72829 * 3 2 1 27 27 O 1.21588 * 118.69838 * 359.42957 * 26 3 2 28 28 H 1.08999 * 109.47092 * 300.00116 * 1 2 3 29 29 H 1.09001 * 109.47118 * 60.00273 * 1 2 3 30 30 H 1.08996 * 109.47377 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47092 * 239.99884 * 2 1 3 32 32 H 1.08999 * 109.47296 * 120.00239 * 2 1 3 33 33 H 1.09002 * 109.52136 * 328.94078 * 4 3 2 34 34 H 1.09001 * 109.52181 * 89.06896 * 4 3 2 35 35 H 1.08005 * 119.81962 * 359.97438 * 11 10 8 36 36 H 1.07995 * 119.79814 * 180.02562 * 12 11 10 37 37 H 1.07994 * 119.97537 * 179.97438 * 13 12 11 38 38 H 0.97001 * 119.99582 * 180.02562 * 18 17 15 39 39 H 1.08003 * 120.20719 * 359.97438 * 23 10 8 40 40 H 1.08999 * 109.52829 * 175.38580 * 24 5 4 41 41 H 1.09005 * 109.52053 * 295.58325 * 24 5 4 42 42 H 0.97002 * 119.32977 * 150.91841 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2573 2.0573 1.2761 5 6 2.0448 3.5639 1.0944 6 1 1.0020 3.7589 0.8440 7 8 2.3888 4.2566 2.3234 8 6 1.7266 5.3996 2.5871 9 8 0.8852 5.8067 1.8115 10 6 2.0247 6.1586 3.8194 11 6 2.9945 5.6903 4.7133 12 6 3.2785 6.3951 5.8690 13 6 2.6102 7.5655 6.1541 14 6 1.6316 8.0524 5.2673 15 6 0.9442 9.2541 5.5572 16 1 1.3968 9.9930 6.2018 17 6 -0.3221 9.4855 5.0086 18 7 -1.0187 8.4882 4.5271 19 14 -1.0181 11.2184 4.9636 20 1 -0.0408 12.1601 5.5666 21 1 -1.2798 11.6104 3.5554 22 1 -2.2870 11.2624 5.7337 23 6 1.3455 7.3416 4.0895 24 6 2.9506 4.0510 -0.0416 25 7 2.6740 3.2666 -1.2462 26 6 2.2426 1.9988 -1.1694 27 8 2.0426 1.3867 -2.2008 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.5613 1.6789 2.0248 34 1 3.2804 1.8694 1.6018 35 1 3.5234 4.7731 4.4999 36 1 4.0289 6.0256 6.5522 37 1 2.8373 8.1099 7.0588 38 1 -1.8964 8.6488 4.1465 39 1 0.5995 7.7092 3.4005 40 1 2.7525 5.1044 -0.2393 41 1 3.9946 3.9230 0.2446 42 1 2.8085 3.6709 -2.1177 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649208373.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:03:25 Heat of formation + Delta-G solvation = -108.790018 kcal Electronic energy + Delta-G solvation = -26279.148943 eV Core-core repulsion = 22416.252728 eV Total energy + Delta-G solvation = -3862.896215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.16447 -41.27743 -39.25983 -38.02973 -36.91001 -36.44080 -35.60226 -32.54105 -31.97134 -31.35676 -30.69449 -27.29372 -27.10836 -25.55319 -24.76052 -23.09536 -22.79734 -21.57482 -20.37441 -19.72902 -18.72594 -18.66890 -18.08026 -17.69719 -16.99077 -16.84962 -16.52675 -16.36911 -15.99799 -15.49741 -15.30182 -15.13721 -15.03028 -14.76259 -14.49261 -14.32244 -13.96871 -13.64971 -13.51770 -13.29920 -12.98759 -12.88473 -12.81817 -12.57974 -12.49783 -12.20116 -12.09114 -11.96128 -11.91451 -11.53011 -11.37857 -11.25812 -11.09802 -10.37324 -9.76397 -9.60774 -9.42593 -8.69068 -6.39107 0.11431 0.97691 1.08691 1.38317 1.44936 1.53548 1.76684 1.90716 1.96976 2.18876 2.58781 2.72421 3.32640 3.37260 3.64101 3.65296 3.89115 4.10032 4.22352 4.30381 4.39726 4.44841 4.51669 4.56461 4.62971 4.66070 4.71109 4.87754 4.90254 5.06033 5.13847 5.17140 5.23426 5.28387 5.29307 5.45638 5.56519 5.82329 5.90737 5.92434 6.02502 6.24929 6.54051 6.57569 6.74890 6.87067 6.89601 7.35655 8.28265 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.019402 B = 0.002932 C = 0.002768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1442.823352 B = 9547.616294 C =10114.690258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.125 3.875 3 N -0.618 5.618 4 C 0.123 3.877 5 C 0.055 3.945 6 H 0.073 0.927 7 O -0.323 6.323 8 C 0.520 3.480 9 O -0.540 6.540 10 C -0.127 4.127 11 C -0.175 4.175 12 C -0.099 4.099 13 C -0.203 4.203 14 C 0.065 3.935 15 C -0.494 4.494 16 H 0.086 0.914 17 C 0.032 3.968 18 N -0.826 5.826 19 Si 0.980 3.020 20 H -0.251 1.251 21 H -0.271 1.271 22 H -0.266 1.266 23 C -0.122 4.122 24 C 0.099 3.901 25 N -0.724 5.724 26 C 0.701 3.299 27 O -0.632 6.632 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.141 0.859 36 H 0.142 0.858 37 H 0.113 0.887 38 H 0.287 0.713 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.101 0.899 42 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.946 -12.057 -3.831 14.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.004 3.996 3 N -0.356 5.356 4 C 0.000 4.000 5 C -0.002 4.002 6 H 0.091 0.909 7 O -0.238 6.238 8 C 0.368 3.632 9 O -0.431 6.431 10 C -0.128 4.128 11 C -0.194 4.194 12 C -0.117 4.117 13 C -0.222 4.222 14 C 0.063 3.937 15 C -0.523 4.523 16 H 0.104 0.896 17 C -0.183 4.183 18 N -0.452 5.452 19 Si 0.801 3.199 20 H -0.175 1.175 21 H -0.196 1.196 22 H -0.191 1.191 23 C -0.142 4.142 24 C -0.025 4.025 25 N -0.383 5.383 26 C 0.402 3.598 27 O -0.514 6.514 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.108 0.892 31 H 0.097 0.903 32 H 0.131 0.869 33 H 0.127 0.873 34 H 0.123 0.877 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.131 0.869 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.103 0.897 41 H 0.119 0.881 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 6.346 -12.422 -4.490 14.654 hybrid contribution -0.938 1.308 -0.644 1.733 sum 5.408 -11.114 -5.135 13.384 Atomic orbital electron populations 1.22139 0.95949 1.03281 1.01131 1.21564 0.94267 0.79272 1.04536 1.46893 1.69475 1.15674 1.03586 1.21540 1.05152 0.87383 0.85906 1.23057 1.00305 0.93413 0.83399 0.90868 1.86599 1.60864 1.35654 1.40679 1.21713 0.77216 0.78671 0.85644 1.90779 1.33738 1.68762 1.49851 1.19003 1.02951 0.96959 0.93915 1.21006 1.00250 1.02167 0.95970 1.20982 0.99294 0.94587 0.96863 1.21523 1.02251 0.98721 0.99753 1.17886 0.92326 0.93134 0.90387 1.19874 1.01344 1.03200 1.27859 0.89615 1.26798 0.96861 1.02602 0.92064 1.69865 1.11336 1.34370 1.29598 0.85177 0.78625 0.77223 0.78873 1.17456 1.19604 1.19089 1.21460 1.00080 0.94970 0.97698 1.21880 1.00348 0.96346 0.83961 1.44749 1.71880 1.11459 1.10243 1.15715 0.78101 0.81871 0.84116 1.90915 1.61297 1.65250 1.33948 0.92469 0.94935 0.89227 0.90343 0.86853 0.87278 0.87709 0.84169 0.84051 0.86907 0.90255 0.87782 0.89652 0.88134 0.73628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.24 71.98 0.74 -2.18 16 2 C 0.13 2.14 6.04 86.38 0.52 2.66 16 3 N -0.62 -13.20 2.81 -841.32 -2.37 -15.57 16 4 C 0.12 2.28 6.16 86.48 0.53 2.81 16 5 C 0.06 1.40 2.71 30.75 0.08 1.49 16 6 H 0.07 2.26 7.16 -2.39 -0.02 2.25 16 7 O -0.32 -9.73 9.13 -56.11 -0.51 -10.24 16 8 C 0.52 20.90 7.88 70.34 0.55 21.46 16 9 O -0.54 -24.92 15.59 19.95 0.31 -24.61 16 10 C -0.13 -5.60 5.87 -20.14 -0.12 -5.72 16 11 C -0.17 -6.51 9.62 22.70 0.22 -6.29 16 12 C -0.10 -3.66 10.01 22.18 0.22 -3.44 16 13 C -0.20 -8.81 9.78 22.77 0.22 -8.59 16 14 C 0.06 3.31 5.57 -21.32 -0.12 3.19 16 15 C -0.49 -25.42 9.05 23.47 0.21 -25.21 16 16 H 0.09 4.17 7.91 -2.91 -0.02 4.15 16 17 C 0.03 1.58 5.14 85.25 0.44 2.01 16 18 N -0.83 -43.77 10.96 21.82 0.24 -43.53 16 19 Si 0.98 37.83 29.59 68.60 2.03 39.86 16 20 H -0.25 -9.25 7.11 99.48 0.71 -8.55 16 21 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 23 C -0.12 -6.32 8.24 23.02 0.19 -6.13 16 24 C 0.10 2.19 6.86 86.48 0.59 2.78 16 25 N -0.72 -16.55 5.58 -479.83 -2.68 -19.23 16 26 C 0.70 18.80 8.18 179.45 1.47 20.27 16 27 O -0.63 -21.18 16.48 -3.99 -0.07 -21.25 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.08 1.54 7.29 -2.39 -0.02 1.52 16 32 H 0.11 1.17 8.06 -2.39 -0.02 1.15 16 33 H 0.11 1.74 8.06 -2.39 -0.02 1.72 16 34 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.14 4.21 7.59 -2.91 -0.02 4.18 16 36 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 37 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.29 13.99 8.30 -92.71 -0.77 13.22 16 39 H 0.10 5.98 5.75 -2.91 -0.02 5.96 16 40 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 41 H 0.10 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.42 8.58 8.88 -92.71 -0.82 7.76 16 Total: -1.00 -67.26 356.79 2.94 -64.32 By element: Atomic # 1 Polarization: 30.91 SS G_CDS: 0.23 Total: 31.14 kcal Atomic # 6 Polarization: -6.64 SS G_CDS: 5.76 Total: -0.89 kcal Atomic # 7 Polarization: -73.53 SS G_CDS: -4.81 Total: -78.33 kcal Atomic # 8 Polarization: -55.83 SS G_CDS: -0.27 Total: -56.10 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 2.03 Total: 39.86 kcal Total: -67.26 2.94 -64.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649208373.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.469 kcal (2) G-P(sol) polarization free energy of solvation -67.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds