Wall clock time and date at job start Tue Mar 31 2020 12:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 C 1.50700 * 109.47186 * 65.00419 * 4 2 1 6 6 O 1.20827 * 120.00156 * 359.97438 * 5 4 2 7 7 O 1.34225 * 120.00151 * 179.97438 * 5 4 2 8 8 C 1.45202 * 117.00245 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46859 * 330.00593 * 8 7 5 10 10 C 1.50690 * 109.47667 * 209.99708 * 8 7 5 11 11 H 1.08003 * 119.99975 * 0.02562 * 10 8 7 12 12 C 1.37872 * 120.00675 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99824 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00503 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46983 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47275 * 120.00090 * 14 12 10 17 17 H 1.48504 * 109.47056 * 240.00260 * 14 12 10 18 18 C 1.50708 * 109.46968 * 89.99768 * 8 7 5 19 19 C 1.34515 * 125.79106 * 219.71649 * 18 8 7 20 20 C 1.41377 * 106.84309 * 179.89040 * 19 18 8 21 21 C 1.34511 * 106.83998 * 0.37207 * 20 19 18 22 22 O 1.34303 * 125.78802 * 40.02851 * 18 8 7 23 23 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 24 24 C 1.39868 * 126.04185 * 59.68535 * 23 2 1 25 25 N 1.30837 * 108.20146 * 179.82017 * 24 23 2 26 26 N 1.40086 * 108.20671 * 0.44238 * 25 24 23 27 27 C 1.46499 * 126.03669 * 179.73916 * 26 25 24 28 28 C 1.34944 * 107.92355 * 359.71835 * 26 25 24 29 29 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 31 31 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46705 * 184.99884 * 4 2 1 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 0.96994 * 120.00579 * 179.97438 * 13 12 10 35 35 H 1.08001 * 126.57653 * 0.03403 * 19 18 8 36 36 H 1.07995 * 126.57989 * 180.16532 * 20 19 18 37 37 H 1.07998 * 125.79099 * 179.74933 * 21 20 19 38 38 H 1.08000 * 125.90241 * 0.02562 * 24 23 2 39 39 H 1.08994 * 109.47496 * 269.97007 * 27 26 25 40 40 H 1.09002 * 109.47366 * 29.97781 * 27 26 25 41 41 H 1.09004 * 109.46747 * 149.97408 * 27 26 25 42 42 H 1.07998 * 126.12775 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0134 1.0830 -2.3638 7 8 1.9838 -0.3898 -3.6951 8 6 1.5657 0.4106 -4.8322 9 1 0.6369 0.9273 -4.5909 10 6 1.3473 -0.4853 -6.0241 11 1 1.5063 -1.5499 -5.9358 12 6 0.9434 0.0539 -7.2270 13 7 0.7493 1.3502 -7.3345 14 14 0.6720 -1.0568 -8.7042 15 1 0.9567 -2.4639 -8.3245 16 1 -0.7372 -0.9415 -9.1579 17 1 1.5814 -0.6479 -9.8048 18 6 2.6347 1.4230 -5.1540 19 6 2.4240 2.6991 -5.5236 20 6 3.6959 3.2836 -5.7219 21 6 4.6077 2.3274 -5.4696 22 8 3.9592 1.2025 -5.1261 23 6 2.0324 -0.7104 1.2304 24 6 1.7685 -2.0390 1.5790 25 7 2.3776 -2.2939 2.7085 26 7 3.0410 -1.1308 3.1202 27 6 3.8408 -0.9802 4.3384 28 6 2.8136 -0.1739 2.1964 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1263 -0.7996 -1.2056 33 1 1.6053 -1.7199 -1.2951 34 1 0.4655 1.7296 -8.1809 35 1 1.4668 3.1847 -5.6435 36 1 3.8968 4.3014 -6.0219 37 1 5.6795 2.4442 -5.5329 38 1 1.1686 -2.7354 1.0118 39 1 3.2004 -0.6458 5.1545 40 1 4.2906 -1.9383 4.5986 41 1 4.6266 -0.2441 4.1683 42 1 3.1883 0.8387 2.2229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650512358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:03 Heat of formation + Delta-G solvation = 3.075301 kcal Electronic energy + Delta-G solvation = -26283.971077 eV Core-core repulsion = 22425.925707 eV Total energy + Delta-G solvation = -3858.045371 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36802 -41.31701 -39.57659 -36.27392 -34.89078 -33.25679 -32.85789 -31.69705 -30.01074 -29.54272 -27.88104 -26.64247 -26.51940 -23.41083 -22.50320 -21.24379 -20.72862 -20.31144 -19.49949 -19.10005 -17.25491 -16.90012 -16.50685 -16.33879 -15.59317 -15.40461 -15.30588 -14.75144 -14.52534 -14.42925 -14.08231 -13.61579 -13.18445 -13.08102 -12.91879 -12.69905 -12.61188 -12.36952 -11.95862 -11.73028 -11.56627 -11.41427 -11.23531 -11.11478 -11.02528 -10.96349 -10.88882 -10.41246 -10.32800 -10.04579 -9.53678 -9.52436 -9.33863 -8.81113 -8.64025 -8.44976 -7.24368 -6.20204 -4.37708 1.77239 2.38668 2.70491 2.88904 2.99114 3.21681 3.28336 3.32911 3.61513 3.97486 4.20561 4.28450 4.37024 4.71272 4.85670 4.93873 5.00360 5.08341 5.10772 5.25227 5.32807 5.61248 5.62417 5.73957 5.76401 5.85275 5.88675 6.06113 6.07523 6.22720 6.39766 6.43259 6.51326 6.62383 6.78687 6.86987 7.00506 7.17047 7.24633 7.44455 7.58642 7.71218 7.72356 7.89732 8.38373 8.56261 8.82686 9.29302 10.78590 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.003104 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.664276 B = 9017.897459 C = 9813.784793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.002 3.998 3 H 0.083 0.917 4 C -0.106 4.106 5 C 0.453 3.547 6 O -0.515 6.515 7 O -0.350 6.350 8 C 0.297 3.703 9 H 0.079 0.921 10 C -0.530 4.530 11 H 0.078 0.922 12 C 0.069 3.931 13 N -0.868 5.868 14 Si 0.913 3.087 15 H -0.268 1.268 16 H -0.280 1.280 17 H -0.281 1.281 18 C 0.027 3.973 19 C -0.179 4.179 20 C -0.218 4.218 21 C -0.090 4.090 22 O -0.177 6.177 23 C -0.223 4.223 24 C 0.057 3.943 25 N -0.301 5.301 26 N -0.382 5.382 27 C 0.104 3.896 28 C 0.056 3.944 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.268 0.732 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.184 0.816 38 H 0.183 0.817 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.066 -1.222 17.286 18.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 H 0.101 0.899 4 C -0.144 4.144 5 C 0.297 3.703 6 O -0.404 6.404 7 O -0.266 6.266 8 C 0.244 3.756 9 H 0.096 0.904 10 C -0.567 4.567 11 H 0.096 0.904 12 C -0.137 4.137 13 N -0.503 5.503 14 Si 0.739 3.261 15 H -0.193 1.193 16 H -0.206 1.206 17 H -0.207 1.207 18 C -0.024 4.024 19 C -0.198 4.198 20 C -0.237 4.237 21 C -0.157 4.157 22 O -0.073 6.073 23 C -0.234 4.234 24 C -0.129 4.129 25 N -0.122 5.122 26 N -0.164 5.164 27 C -0.038 4.038 28 C -0.090 4.090 29 H 0.070 0.930 30 H 0.097 0.903 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.077 0.923 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.200 0.800 38 H 0.200 0.800 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.292 -1.899 18.260 19.106 hybrid contribution -0.155 0.681 -1.782 1.914 sum 5.137 -1.218 16.477 17.302 Atomic orbital electron populations 1.21955 0.94002 1.01700 1.02966 1.19191 0.96201 0.98283 0.88140 0.89879 1.21410 1.03477 1.00051 0.89505 1.23518 0.76513 0.84258 0.86054 1.90576 1.37771 1.24738 1.87364 1.86555 1.71655 1.53309 1.15118 1.19157 0.88794 0.86803 0.80839 0.90363 1.20943 1.47950 0.94358 0.93439 0.90404 1.24946 0.94380 0.95505 0.98868 1.70039 1.43434 1.10436 1.26345 0.86195 0.77894 0.80585 0.81398 1.19257 1.20567 1.20723 1.23576 0.80680 0.95814 1.02298 1.21204 0.97671 0.94041 1.06917 1.21687 0.93657 0.99919 1.08471 1.23592 0.97563 0.85316 1.09237 1.83994 1.19412 1.35601 1.68339 1.20067 1.07646 0.95382 1.00330 1.23785 0.98995 0.96194 0.93922 1.77338 1.13528 1.05956 1.15420 1.48421 1.40524 1.08377 1.19092 1.21811 0.94343 1.03967 0.83678 1.22353 1.00306 0.95664 0.90679 0.93049 0.90278 0.93103 0.88346 0.88135 0.92253 0.84130 0.85196 0.79950 0.80034 0.90959 0.89437 0.89575 0.80979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.82 37.16 0.33 -1.62 16 2 C 0.00 0.02 2.40 -91.77 -0.22 -0.20 16 3 H 0.08 1.12 7.92 -51.93 -0.41 0.70 16 4 C -0.11 -1.52 5.15 -27.88 -0.14 -1.66 16 5 C 0.45 8.97 7.64 36.01 0.28 9.25 16 6 O -0.51 -11.21 13.19 -18.75 -0.25 -11.45 16 7 O -0.35 -8.17 9.85 -41.27 -0.41 -8.58 16 8 C 0.30 7.81 2.42 -29.04 -0.07 7.74 16 9 H 0.08 2.19 7.15 -51.93 -0.37 1.82 16 10 C -0.53 -14.58 8.89 -34.45 -0.31 -14.89 16 11 H 0.08 2.11 7.81 -52.48 -0.41 1.70 16 12 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 13 N -0.87 -23.93 10.92 55.43 0.61 -23.33 16 14 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 C 0.03 0.71 5.54 -35.62 -0.20 0.51 16 19 C -0.18 -4.44 9.16 -39.70 -0.36 -4.80 16 20 C -0.22 -4.66 10.91 -39.71 -0.43 -5.09 16 21 C -0.09 -1.85 12.09 29.41 0.36 -1.49 16 22 O -0.18 -4.35 10.65 4.47 0.05 -4.30 16 23 C -0.22 -2.58 4.80 -105.05 -0.50 -3.08 16 24 C 0.06 0.67 11.54 -17.37 -0.20 0.47 16 25 N -0.30 -3.79 12.58 30.62 0.39 -3.41 16 26 N -0.38 -3.94 4.01 -68.16 -0.27 -4.21 16 27 C 0.10 0.61 11.47 59.85 0.69 1.29 16 28 C 0.06 0.56 11.38 -17.22 -0.20 0.37 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.08 1.24 5.96 -51.93 -0.31 0.93 16 31 H 0.05 0.59 8.02 -51.93 -0.42 0.18 16 32 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 34 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 35 H 0.14 3.57 7.85 -52.49 -0.41 3.16 16 36 H 0.13 2.35 8.06 -52.49 -0.42 1.92 16 37 H 0.18 2.84 8.06 -52.49 -0.42 2.42 16 38 H 0.18 1.74 8.06 -52.49 -0.42 1.32 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 LS Contribution 363.66 15.07 5.48 5.48 Total: -1.00 -33.30 363.66 -6.21 -39.51 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -5.69 Total: 5.87 kcal Atomic # 6 Polarization: -10.36 SS G_CDS: -1.08 Total: -11.45 kcal Atomic # 7 Polarization: -31.67 SS G_CDS: 0.72 Total: -30.95 kcal Atomic # 8 Polarization: -23.73 SS G_CDS: -0.61 Total: -24.33 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.30 -6.21 -39.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.585 kcal (2) G-P(sol) polarization free energy of solvation -33.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.510 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds