Wall clock time and date at job start Tue Mar 31 2020 12:48:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08993 * 109.46955 * 2 1 4 4 C 1.52999 * 109.46626 * 239.99528 * 2 1 3 5 5 C 1.50700 * 109.47186 * 65.00419 * 4 2 1 6 6 O 1.20827 * 120.00156 * 359.97438 * 5 4 2 7 7 O 1.34225 * 120.00151 * 179.97438 * 5 4 2 8 8 C 1.45202 * 117.00245 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.46859 * 330.00593 * 8 7 5 10 10 C 1.50690 * 109.47667 * 209.99708 * 8 7 5 11 11 H 1.08003 * 119.99975 * 0.02562 * 10 8 7 12 12 C 1.37872 * 120.00675 * 179.97438 * 10 8 7 13 13 N 1.31516 * 119.99824 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00503 * 180.02562 * 12 10 8 15 15 H 1.48500 * 109.46983 * 359.97438 * 14 12 10 16 16 H 1.48492 * 109.47275 * 120.00090 * 14 12 10 17 17 H 1.48504 * 109.47056 * 240.00260 * 14 12 10 18 18 C 1.50708 * 109.46968 * 89.99768 * 8 7 5 19 19 C 1.34515 * 125.79106 * 219.71649 * 18 8 7 20 20 C 1.41377 * 106.84309 * 179.89040 * 19 18 8 21 21 C 1.34511 * 106.83998 * 0.37207 * 20 19 18 22 22 O 1.34303 * 125.78802 * 40.02851 * 18 8 7 23 23 C 1.50698 * 109.47184 * 120.00158 * 2 1 3 24 24 C 1.39868 * 126.04185 * 59.68535 * 23 2 1 25 25 N 1.30837 * 108.20146 * 179.82017 * 24 23 2 26 26 N 1.40086 * 108.20671 * 0.44238 * 25 24 23 27 27 C 1.46499 * 126.03669 * 179.73916 * 26 25 24 28 28 C 1.34944 * 107.92355 * 359.71835 * 26 25 24 29 29 H 1.09001 * 109.46998 * 299.99880 * 1 2 3 30 30 H 1.09000 * 109.47050 * 60.00171 * 1 2 3 31 31 H 1.09001 * 109.46801 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46705 * 184.99884 * 4 2 1 33 33 H 1.08993 * 109.47768 * 305.00075 * 4 2 1 34 34 H 0.96994 * 120.00579 * 179.97438 * 13 12 10 35 35 H 1.08001 * 126.57653 * 0.03403 * 19 18 8 36 36 H 1.07995 * 126.57989 * 180.16532 * 20 19 18 37 37 H 1.07998 * 125.79099 * 179.74933 * 21 20 19 38 38 H 1.08000 * 125.90241 * 0.02562 * 24 23 2 39 39 H 1.08994 * 109.47496 * 269.97007 * 27 26 25 40 40 H 1.09002 * 109.47366 * 29.97781 * 27 26 25 41 41 H 1.09004 * 109.46747 * 149.97408 * 27 26 25 42 42 H 1.07998 * 126.12775 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 1.6413 0.0569 -2.4766 6 8 1.0134 1.0830 -2.3638 7 8 1.9838 -0.3898 -3.6951 8 6 1.5657 0.4106 -4.8322 9 1 0.6369 0.9273 -4.5909 10 6 1.3473 -0.4853 -6.0241 11 1 1.5063 -1.5499 -5.9358 12 6 0.9434 0.0539 -7.2270 13 7 0.7493 1.3502 -7.3345 14 14 0.6720 -1.0568 -8.7042 15 1 0.9567 -2.4639 -8.3245 16 1 -0.7372 -0.9415 -9.1579 17 1 1.5814 -0.6479 -9.8048 18 6 2.6347 1.4230 -5.1540 19 6 2.4240 2.6991 -5.5236 20 6 3.6959 3.2836 -5.7219 21 6 4.6077 2.3274 -5.4696 22 8 3.9592 1.2025 -5.1261 23 6 2.0324 -0.7104 1.2304 24 6 1.7685 -2.0390 1.5790 25 7 2.3776 -2.2939 2.7085 26 7 3.0410 -1.1308 3.1202 27 6 3.8408 -0.9802 4.3384 28 6 2.8136 -0.1739 2.1964 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 3.1263 -0.7996 -1.2056 33 1 1.6053 -1.7199 -1.2951 34 1 0.4655 1.7296 -8.1809 35 1 1.4668 3.1847 -5.6435 36 1 3.8968 4.3014 -6.0219 37 1 5.6795 2.4442 -5.5329 38 1 1.1686 -2.7354 1.0118 39 1 3.2004 -0.6458 5.1545 40 1 4.2906 -1.9383 4.5986 41 1 4.6266 -0.2441 4.1683 42 1 3.1883 0.8387 2.2229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650512358.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:02 Heat of formation + Delta-G solvation = -16.104569 kcal Electronic energy + Delta-G solvation = -26284.802779 eV Core-core repulsion = 22425.925707 eV Total energy + Delta-G solvation = -3858.877072 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.15179 -42.18354 -41.20321 -37.84687 -36.13685 -35.25747 -33.62419 -33.52468 -31.68452 -30.61640 -29.15885 -28.37888 -27.32824 -25.15090 -23.76551 -22.43891 -22.12100 -21.76963 -21.03630 -20.34998 -19.01991 -18.49742 -18.16252 -17.42221 -17.13161 -16.95096 -16.50048 -16.30153 -16.21578 -15.49741 -15.20284 -14.87249 -14.45437 -14.41995 -14.06835 -13.74448 -13.67348 -13.47849 -13.43300 -13.34273 -13.26110 -13.04856 -12.96041 -12.82352 -12.45647 -12.17706 -12.11772 -11.97287 -11.92545 -11.36030 -11.32633 -11.07090 -10.79190 -10.49971 -10.31682 -9.28419 -9.09418 -8.22351 -6.50498 0.98688 1.12457 1.38921 1.40574 1.42500 1.54650 1.72632 1.81238 1.99106 2.18224 2.44023 2.46258 3.02853 3.64417 3.79257 4.00187 4.12316 4.19609 4.25889 4.37656 4.42156 4.46622 4.48115 4.59041 4.64331 4.71421 4.73420 4.75254 4.78960 4.88214 5.02382 5.17700 5.21596 5.35384 5.40638 5.44938 5.47029 5.52091 5.71360 5.74673 5.88005 6.04208 6.17891 6.51133 6.62567 6.77703 7.01008 7.22431 8.74546 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017937 B = 0.003104 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1560.664276 B = 9017.897459 C = 9813.784793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.014 3.986 3 H 0.075 0.925 4 C -0.095 4.095 5 C 0.446 3.554 6 O -0.539 6.539 7 O -0.362 6.362 8 C 0.301 3.699 9 H 0.044 0.956 10 C -0.555 4.555 11 H 0.073 0.927 12 C 0.024 3.976 13 N -0.891 5.891 14 Si 0.979 3.021 15 H -0.262 1.262 16 H -0.271 1.271 17 H -0.278 1.278 18 C -0.002 4.002 19 C -0.193 4.193 20 C -0.228 4.228 21 C -0.071 4.071 22 O -0.195 6.195 23 C -0.240 4.240 24 C 0.051 3.949 25 N -0.333 5.333 26 N -0.382 5.382 27 C 0.094 3.906 28 C 0.064 3.936 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.062 0.938 32 H 0.114 0.886 33 H 0.121 0.879 34 H 0.270 0.730 35 H 0.121 0.879 36 H 0.165 0.835 37 H 0.239 0.761 38 H 0.194 0.806 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.055 -1.382 17.982 19.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.006 4.006 3 H 0.093 0.907 4 C -0.132 4.132 5 C 0.291 3.709 6 O -0.430 6.430 7 O -0.279 6.279 8 C 0.247 3.753 9 H 0.061 0.939 10 C -0.592 4.592 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.526 5.526 14 Si 0.802 3.198 15 H -0.186 1.186 16 H -0.196 1.196 17 H -0.203 1.203 18 C -0.053 4.053 19 C -0.213 4.213 20 C -0.247 4.247 21 C -0.137 4.137 22 O -0.092 6.092 23 C -0.251 4.251 24 C -0.135 4.135 25 N -0.155 5.155 26 N -0.164 5.164 27 C -0.046 4.046 28 C -0.083 4.083 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.132 0.868 33 H 0.139 0.861 34 H 0.079 0.921 35 H 0.139 0.861 36 H 0.183 0.817 37 H 0.255 0.745 38 H 0.211 0.789 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.131 0.869 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.283 -2.067 18.997 20.450 hybrid contribution -0.721 0.826 -1.874 2.171 sum 6.562 -1.240 17.122 18.379 Atomic orbital electron populations 1.21896 0.94521 1.02142 1.01736 1.19010 0.95701 0.97818 0.88066 0.90685 1.21572 1.04486 1.00175 0.86996 1.24660 0.75645 0.84415 0.86167 1.90564 1.38824 1.26136 1.87460 1.86544 1.72086 1.53355 1.15928 1.18703 0.88146 0.86850 0.81599 0.93877 1.21196 1.49039 0.94386 0.94591 0.90897 1.25812 0.93758 0.96952 1.01412 1.70166 1.43574 1.11864 1.26979 0.85189 0.78106 0.78877 0.77617 1.18591 1.19609 1.20348 1.23362 0.81393 0.96112 1.04404 1.21274 0.98572 0.94290 1.07137 1.22036 0.91986 1.01853 1.08792 1.24666 0.99687 0.83491 1.05900 1.83965 1.18833 1.37433 1.68976 1.19896 1.09281 0.95554 1.00394 1.24034 0.98981 0.96537 0.93913 1.77290 1.14674 1.07529 1.16053 1.48784 1.40035 1.07673 1.19921 1.22170 0.94870 1.05051 0.82535 1.22803 0.99007 0.96640 0.89875 0.92077 0.93540 0.91868 0.86804 0.86114 0.92100 0.86050 0.81744 0.74464 0.78889 0.89665 0.89216 0.86909 0.78172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 8.82 71.98 0.64 -3.18 16 2 C 0.01 0.35 2.40 -11.54 -0.03 0.32 16 3 H 0.07 1.99 7.92 -2.39 -0.02 1.97 16 4 C -0.09 -2.66 5.15 29.85 0.15 -2.51 16 5 C 0.45 18.27 7.64 71.24 0.54 18.81 16 6 O -0.54 -24.76 13.19 21.96 0.29 -24.47 16 7 O -0.36 -17.61 9.85 -49.43 -0.49 -18.09 16 8 C 0.30 16.61 2.42 29.10 0.07 16.68 16 9 H 0.04 2.62 7.15 -2.39 -0.02 2.60 16 10 C -0.56 -31.63 8.89 25.60 0.23 -31.41 16 11 H 0.07 4.09 7.81 -2.91 -0.02 4.06 16 12 C 0.02 1.31 5.30 84.65 0.45 1.76 16 13 N -0.89 -50.51 10.92 21.45 0.23 -50.28 16 14 Si 0.98 43.16 29.54 68.60 2.03 45.18 16 15 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 18 C 0.00 -0.12 5.54 24.84 0.14 0.02 16 19 C -0.19 -9.81 9.16 22.19 0.20 -9.61 16 20 C -0.23 -9.38 10.91 22.19 0.24 -9.14 16 21 C -0.07 -2.75 12.09 66.97 0.81 -1.94 16 22 O -0.19 -9.50 10.65 -1.37 -0.01 -9.51 16 23 C -0.24 -5.17 4.80 -20.14 -0.10 -5.27 16 24 C 0.05 1.12 11.54 85.24 0.98 2.10 16 25 N -0.33 -7.94 12.58 -57.02 -0.72 -8.66 16 26 N -0.38 -7.05 4.01 -369.57 -1.48 -8.54 16 27 C 0.09 0.85 11.47 127.77 1.47 2.32 16 28 C 0.06 1.14 11.38 83.54 0.95 2.09 16 29 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.05 1.52 5.96 -2.39 -0.01 1.51 16 31 H 0.06 1.46 8.02 -2.39 -0.02 1.44 16 32 H 0.11 2.89 8.14 -2.38 -0.02 2.87 16 33 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.27 14.39 8.31 -92.71 -0.77 13.62 16 35 H 0.12 6.51 7.85 -2.91 -0.02 6.49 16 36 H 0.17 5.47 8.06 -2.91 -0.02 5.45 16 37 H 0.24 6.22 8.06 -2.91 -0.02 6.19 16 38 H 0.19 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.20 2.28 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -75.48 363.66 7.62 -67.86 By element: Atomic # 1 Polarization: 24.43 SS G_CDS: 1.02 Total: 25.45 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 6.75 Total: -18.95 kcal Atomic # 7 Polarization: -65.51 SS G_CDS: -1.97 Total: -67.47 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -0.21 Total: -52.07 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -75.48 7.62 -67.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512358.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.758 kcal (2) G-P(sol) polarization free energy of solvation -75.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds