Wall clock time and date at job start Tue Mar 31 2020 12:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47045 * 2 1 4 4 C 1.53004 * 109.47300 * 119.99846 * 2 1 3 5 5 C 1.50700 * 109.47074 * 295.00060 * 4 2 1 6 6 O 1.20826 * 120.00409 * 359.97438 * 5 4 2 7 7 O 1.34229 * 119.99835 * 179.97438 * 5 4 2 8 8 C 1.45198 * 117.00099 * 179.97438 * 7 5 4 9 9 H 1.09007 * 109.46731 * 30.00729 * 8 7 5 10 10 C 1.50708 * 109.47133 * 150.00090 * 8 7 5 11 11 H 1.07994 * 119.99925 * 0.02562 * 10 8 7 12 12 C 1.37877 * 119.99573 * 180.02562 * 10 8 7 13 13 N 1.31513 * 120.00617 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 119.99530 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47068 * 89.99783 * 14 12 10 16 16 H 1.48496 * 109.47062 * 210.00012 * 14 12 10 17 17 H 1.48500 * 109.47101 * 329.99952 * 14 12 10 18 18 C 1.50694 * 109.47633 * 270.00509 * 8 7 5 19 19 C 1.34512 * 125.78995 * 144.99635 * 18 8 7 20 20 C 1.41389 * 106.84031 * 180.02562 * 19 18 8 21 21 C 1.34514 * 106.83719 * 359.97438 * 20 19 18 22 22 O 1.34298 * 108.42481 * 359.74122 * 21 20 19 23 23 C 1.50703 * 109.46927 * 239.99842 * 2 1 3 24 24 C 1.39863 * 126.03939 * 300.15097 * 23 2 1 25 25 N 1.30837 * 108.19940 * 180.23470 * 24 23 2 26 26 N 1.40080 * 108.20847 * 359.78161 * 25 24 23 27 27 C 1.46501 * 126.03988 * 180.02562 * 26 25 24 28 28 C 1.34953 * 107.92287 * 359.97438 * 26 25 24 29 29 H 1.08994 * 109.47304 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46962 * 300.00170 * 1 2 3 31 31 H 1.08991 * 109.47296 * 59.99704 * 1 2 3 32 32 H 1.09007 * 109.46984 * 54.99952 * 4 2 1 33 33 H 1.08989 * 109.47459 * 174.99700 * 4 2 1 34 34 H 0.96992 * 119.99842 * 179.97438 * 13 12 10 35 35 H 1.07997 * 126.58215 * 0.03671 * 19 18 8 36 36 H 1.07992 * 126.58273 * 179.97438 * 20 19 18 37 37 H 1.08008 * 125.78513 * 180.02562 * 21 20 19 38 38 H 1.08001 * 125.90034 * 0.02562 * 24 23 2 39 39 H 1.08999 * 109.47001 * 269.97426 * 27 26 25 40 40 H 1.09001 * 109.47118 * 29.97853 * 27 26 25 41 41 H 1.08997 * 109.46734 * 149.97364 * 27 26 25 42 42 H 1.08002 * 126.12372 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0571 2.4766 6 8 1.0141 1.0836 2.3638 7 8 1.9832 -0.3900 3.6952 8 6 1.5662 0.4110 4.8322 9 1 0.6379 0.9289 4.5908 10 6 1.3463 -0.4847 6.0241 11 1 1.5046 -1.5493 5.9360 12 6 0.9431 0.0552 7.2270 13 7 0.7508 1.3518 7.3344 14 14 0.6712 -1.0549 8.7046 15 1 1.9381 -1.1804 9.4692 16 1 -0.3778 -0.4693 9.5773 17 1 0.2374 -2.3976 8.2418 18 6 2.6363 1.4219 5.1541 19 6 2.4277 2.6705 5.6090 20 6 3.7002 3.2645 5.7734 21 6 4.6102 2.3431 5.4097 22 8 3.9604 1.2270 5.0413 23 6 2.0323 -0.7105 -1.2305 24 6 1.7710 -2.0400 -1.5773 25 7 2.3801 -2.2949 -2.7069 26 7 3.0451 -1.1324 -3.1176 27 6 3.8494 -0.9834 -4.3330 28 6 2.8130 -0.1738 -2.1966 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 0.4668 1.7314 8.1806 35 1 1.4717 3.1309 5.8102 36 1 3.9027 4.2657 6.1237 37 1 5.6820 2.4765 5.4174 38 1 1.1728 -2.7369 -1.0090 39 1 4.8859 -1.2419 -4.1167 40 1 3.4636 -1.6462 -5.1076 41 1 3.7969 0.0489 -4.6790 42 1 3.1876 0.8389 -2.2233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650512374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:07 Heat of formation + Delta-G solvation = 3.683840 kcal Electronic energy + Delta-G solvation = -26290.564659 eV Core-core repulsion = 22432.545677 eV Total energy + Delta-G solvation = -3858.018982 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.36504 -41.30961 -39.57248 -36.27171 -34.88937 -33.28496 -32.85674 -31.66562 -30.00516 -29.53391 -27.87733 -26.64210 -26.52445 -23.40793 -22.49800 -21.24282 -20.71724 -20.30179 -19.49675 -19.09596 -17.25076 -16.88950 -16.51460 -16.32954 -15.59302 -15.39500 -15.30322 -14.76329 -14.52400 -14.43245 -14.07300 -13.60375 -13.22214 -13.06218 -12.90509 -12.70034 -12.60860 -12.36054 -11.94744 -11.72374 -11.56780 -11.40373 -11.22443 -11.09818 -11.01567 -10.96970 -10.88455 -10.41119 -10.33797 -10.04228 -9.53964 -9.52374 -9.36275 -8.81546 -8.62229 -8.44845 -7.22592 -6.19483 -4.38494 1.77373 2.38792 2.70675 2.90260 2.99477 3.22845 3.27975 3.31062 3.62198 3.98488 4.20934 4.28040 4.36582 4.71339 4.86037 4.94111 5.00417 5.08003 5.10875 5.25411 5.32871 5.61380 5.62478 5.74120 5.76662 5.85476 5.89059 6.06382 6.08737 6.22975 6.41814 6.43536 6.51491 6.62600 6.79390 6.87091 7.02378 7.20390 7.26720 7.44912 7.58773 7.71863 7.75039 7.89662 8.39448 8.55813 8.82709 9.28612 10.77747 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.003106 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.847357 B = 9013.582186 C = 9814.349410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.002 3.998 3 H 0.083 0.917 4 C -0.106 4.106 5 C 0.454 3.546 6 O -0.515 6.515 7 O -0.350 6.350 8 C 0.298 3.702 9 H 0.079 0.921 10 C -0.529 4.529 11 H 0.078 0.922 12 C 0.069 3.931 13 N -0.868 5.868 14 Si 0.913 3.087 15 H -0.278 1.278 16 H -0.283 1.283 17 H -0.269 1.269 18 C 0.022 3.978 19 C -0.176 4.176 20 C -0.219 4.219 21 C -0.091 4.091 22 O -0.179 6.179 23 C -0.223 4.223 24 C 0.057 3.943 25 N -0.301 5.301 26 N -0.382 5.382 27 C 0.104 3.896 28 C 0.055 3.945 29 H 0.050 0.950 30 H 0.078 0.922 31 H 0.050 0.950 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.268 0.732 35 H 0.145 0.855 36 H 0.130 0.870 37 H 0.183 0.817 38 H 0.183 0.817 39 H 0.073 0.927 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.887 -1.174 -17.272 17.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.018 4.018 3 H 0.101 0.899 4 C -0.144 4.144 5 C 0.297 3.703 6 O -0.405 6.405 7 O -0.266 6.266 8 C 0.245 3.755 9 H 0.096 0.904 10 C -0.566 4.566 11 H 0.096 0.904 12 C -0.137 4.137 13 N -0.503 5.503 14 Si 0.740 3.260 15 H -0.204 1.204 16 H -0.208 1.208 17 H -0.194 1.194 18 C -0.029 4.029 19 C -0.195 4.195 20 C -0.238 4.238 21 C -0.158 4.158 22 O -0.075 6.075 23 C -0.234 4.234 24 C -0.129 4.129 25 N -0.122 5.122 26 N -0.164 5.164 27 C -0.038 4.038 28 C -0.090 4.090 29 H 0.069 0.931 30 H 0.097 0.903 31 H 0.070 0.930 32 H 0.119 0.881 33 H 0.117 0.883 34 H 0.078 0.922 35 H 0.163 0.837 36 H 0.148 0.852 37 H 0.200 0.800 38 H 0.200 0.800 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.108 -1.843 -18.265 19.055 hybrid contribution -0.096 0.640 1.806 1.919 sum 5.012 -1.203 -16.458 17.247 Atomic orbital electron populations 1.21950 0.94003 1.01700 1.02965 1.19193 0.96203 0.98286 0.88137 0.89879 1.21408 1.03477 1.00045 0.89508 1.23512 0.76492 0.84261 0.86048 1.90576 1.37799 1.24724 1.87362 1.86549 1.71694 1.53264 1.15125 1.19159 0.88819 0.86706 0.80805 0.90406 1.20917 1.47904 0.94309 0.93510 0.90439 1.24941 0.94381 0.95507 0.98850 1.70025 1.43402 1.10424 1.26428 0.86239 0.78068 0.80410 0.81290 1.20355 1.20838 1.19357 1.23605 0.80665 0.96080 1.02546 1.21287 0.97903 0.94353 1.05960 1.21718 0.93783 1.00377 1.07970 1.23588 0.97532 0.86103 1.08606 1.83988 1.19411 1.36512 1.67629 1.20064 1.07695 0.95341 1.00317 1.23783 0.98985 0.96166 0.93966 1.77336 1.13402 1.06023 1.15481 1.48424 1.40268 1.08373 1.19352 1.21811 0.94484 1.03421 0.84085 1.22355 1.00176 0.95686 0.90790 0.93102 0.90293 0.93039 0.88142 0.88346 0.92184 0.83679 0.85215 0.79981 0.80034 0.90868 0.89487 0.89610 0.80978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 8.82 37.16 0.33 -1.62 16 2 C 0.00 0.02 2.40 -91.77 -0.22 -0.20 16 3 H 0.08 1.12 7.92 -51.93 -0.41 0.71 16 4 C -0.11 -1.52 5.15 -27.88 -0.14 -1.67 16 5 C 0.45 9.00 7.64 36.01 0.28 9.28 16 6 O -0.51 -11.25 13.19 -18.75 -0.25 -11.49 16 7 O -0.35 -8.19 9.84 -42.00 -0.41 -8.60 16 8 C 0.30 7.85 2.41 -29.03 -0.07 7.78 16 9 H 0.08 2.18 7.16 -51.92 -0.37 1.81 16 10 C -0.53 -14.56 8.89 -34.44 -0.31 -14.86 16 11 H 0.08 2.10 7.81 -52.49 -0.41 1.69 16 12 C 0.07 1.85 5.30 -17.82 -0.09 1.76 16 13 N -0.87 -23.82 10.48 55.43 0.58 -23.24 16 14 Si 0.91 20.85 29.54 -169.99 -5.02 15.83 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 17 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 18 C 0.02 0.57 5.67 -35.63 -0.20 0.37 16 19 C -0.18 -4.38 9.04 -39.70 -0.36 -4.74 16 20 C -0.22 -4.70 10.91 -39.70 -0.43 -5.13 16 21 C -0.09 -1.88 12.09 29.42 0.36 -1.52 16 22 O -0.18 -4.39 10.63 2.21 0.02 -4.36 16 23 C -0.22 -2.58 4.80 -105.06 -0.50 -3.09 16 24 C 0.06 0.67 11.54 -17.37 -0.20 0.47 16 25 N -0.30 -3.80 12.58 30.62 0.39 -3.41 16 26 N -0.38 -3.95 4.01 -68.16 -0.27 -4.22 16 27 C 0.10 0.61 11.47 59.85 0.69 1.29 16 28 C 0.06 0.56 11.38 -17.22 -0.20 0.37 16 29 H 0.05 0.60 8.02 -51.93 -0.42 0.18 16 30 H 0.08 1.24 5.96 -51.93 -0.31 0.93 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.10 1.32 8.14 -51.94 -0.42 0.90 16 34 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.15 3.73 7.49 -52.49 -0.39 3.33 16 36 H 0.13 2.36 8.06 -52.49 -0.42 1.93 16 37 H 0.18 2.84 8.06 -52.48 -0.42 2.42 16 38 H 0.18 1.75 8.06 -52.49 -0.42 1.32 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 40 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 41 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -33.19 362.84 -6.26 -39.44 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.67 Total: 6.10 kcal Atomic # 6 Polarization: -10.43 SS G_CDS: -1.08 Total: -11.51 kcal Atomic # 7 Polarization: -31.56 SS G_CDS: 0.69 Total: -30.87 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.64 Total: -24.46 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.19 -6.26 -39.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.127 kcal (2) G-P(sol) polarization free energy of solvation -33.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds