Wall clock time and date at job start Tue Mar 31 2020 12:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 109.47045 * 2 1 4 4 C 1.53004 * 109.47300 * 119.99846 * 2 1 3 5 5 C 1.50700 * 109.47074 * 295.00060 * 4 2 1 6 6 O 1.20826 * 120.00409 * 359.97438 * 5 4 2 7 7 O 1.34229 * 119.99835 * 179.97438 * 5 4 2 8 8 C 1.45198 * 117.00099 * 179.97438 * 7 5 4 9 9 H 1.09007 * 109.46731 * 30.00729 * 8 7 5 10 10 C 1.50708 * 109.47133 * 150.00090 * 8 7 5 11 11 H 1.07994 * 119.99925 * 0.02562 * 10 8 7 12 12 C 1.37877 * 119.99573 * 180.02562 * 10 8 7 13 13 N 1.31513 * 120.00617 * 359.97438 * 12 10 8 14 14 Si 1.86804 * 119.99530 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.47068 * 89.99783 * 14 12 10 16 16 H 1.48496 * 109.47062 * 210.00012 * 14 12 10 17 17 H 1.48500 * 109.47101 * 329.99952 * 14 12 10 18 18 C 1.50694 * 109.47633 * 270.00509 * 8 7 5 19 19 C 1.34512 * 125.78995 * 144.99635 * 18 8 7 20 20 C 1.41389 * 106.84031 * 180.02562 * 19 18 8 21 21 C 1.34514 * 106.83719 * 359.97438 * 20 19 18 22 22 O 1.34298 * 108.42481 * 359.74122 * 21 20 19 23 23 C 1.50703 * 109.46927 * 239.99842 * 2 1 3 24 24 C 1.39863 * 126.03939 * 300.15097 * 23 2 1 25 25 N 1.30837 * 108.19940 * 180.23470 * 24 23 2 26 26 N 1.40080 * 108.20847 * 359.78161 * 25 24 23 27 27 C 1.46501 * 126.03988 * 180.02562 * 26 25 24 28 28 C 1.34953 * 107.92287 * 359.97438 * 26 25 24 29 29 H 1.08994 * 109.47304 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46962 * 300.00170 * 1 2 3 31 31 H 1.08991 * 109.47296 * 59.99704 * 1 2 3 32 32 H 1.09007 * 109.46984 * 54.99952 * 4 2 1 33 33 H 1.08989 * 109.47459 * 174.99700 * 4 2 1 34 34 H 0.96992 * 119.99842 * 179.97438 * 13 12 10 35 35 H 1.07997 * 126.58215 * 0.03671 * 19 18 8 36 36 H 1.07992 * 126.58273 * 179.97438 * 20 19 18 37 37 H 1.08008 * 125.78513 * 180.02562 * 21 20 19 38 38 H 1.08001 * 125.90034 * 0.02562 * 24 23 2 39 39 H 1.08999 * 109.47001 * 269.97426 * 27 26 25 40 40 H 1.09001 * 109.47118 * 29.97853 * 27 26 25 41 41 H 1.08997 * 109.46734 * 149.97364 * 27 26 25 42 42 H 1.08002 * 126.12372 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0571 2.4766 6 8 1.0141 1.0836 2.3638 7 8 1.9832 -0.3900 3.6952 8 6 1.5662 0.4110 4.8322 9 1 0.6379 0.9289 4.5908 10 6 1.3463 -0.4847 6.0241 11 1 1.5046 -1.5493 5.9360 12 6 0.9431 0.0552 7.2270 13 7 0.7508 1.3518 7.3344 14 14 0.6712 -1.0549 8.7046 15 1 1.9381 -1.1804 9.4692 16 1 -0.3778 -0.4693 9.5773 17 1 0.2374 -2.3976 8.2418 18 6 2.6363 1.4219 5.1541 19 6 2.4277 2.6705 5.6090 20 6 3.7002 3.2645 5.7734 21 6 4.6102 2.3431 5.4097 22 8 3.9604 1.2270 5.0413 23 6 2.0323 -0.7105 -1.2305 24 6 1.7710 -2.0400 -1.5773 25 7 2.3801 -2.2949 -2.7069 26 7 3.0451 -1.1324 -3.1176 27 6 3.8494 -0.9834 -4.3330 28 6 2.8130 -0.1738 -2.1966 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -1.7198 1.2952 33 1 3.1263 -0.7995 1.2056 34 1 0.4668 1.7314 8.1806 35 1 1.4717 3.1309 5.8102 36 1 3.9027 4.2657 6.1237 37 1 5.6820 2.4765 5.4174 38 1 1.1728 -2.7369 -1.0090 39 1 4.8859 -1.2419 -4.1167 40 1 3.4636 -1.6462 -5.1076 41 1 3.7969 0.0489 -4.6790 42 1 3.1876 0.8389 -2.2233 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650512374.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:06 Heat of formation + Delta-G solvation = -15.321065 kcal Electronic energy + Delta-G solvation = -26291.388773 eV Core-core repulsion = 22432.545677 eV Total energy + Delta-G solvation = -3858.843097 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.14651 -42.18381 -41.20232 -37.84737 -36.13764 -35.28135 -33.62360 -33.49778 -31.67440 -30.61567 -29.15871 -28.38311 -27.32867 -25.14507 -23.76313 -22.42842 -22.11925 -21.76958 -21.03438 -20.35054 -19.01098 -18.49317 -18.16889 -17.41843 -17.12519 -16.94413 -16.51396 -16.30105 -16.22386 -15.48990 -15.20709 -14.85681 -14.45737 -14.42094 -14.06013 -13.73796 -13.67424 -13.48047 -13.44432 -13.34349 -13.24587 -13.03897 -12.93951 -12.81951 -12.45014 -12.18210 -12.11925 -11.97314 -11.92555 -11.36063 -11.35142 -11.07229 -10.79547 -10.48257 -10.31647 -9.28422 -9.08402 -8.20999 -6.50779 0.98716 1.13623 1.39012 1.40944 1.43417 1.53403 1.72706 1.81058 2.00688 2.17467 2.42823 2.46913 3.03022 3.64310 3.79046 4.00080 4.12323 4.19626 4.26004 4.37724 4.43253 4.46445 4.48478 4.60452 4.64700 4.71532 4.73503 4.75621 4.79042 4.88167 5.02506 5.18802 5.21857 5.38169 5.40800 5.45162 5.48634 5.52427 5.71125 5.74660 5.89806 6.04345 6.17881 6.50728 6.63177 6.77715 7.01088 7.22214 8.74143 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.017981 B = 0.003106 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1556.847357 B = 9013.582186 C = 9814.349410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.014 3.986 3 H 0.075 0.925 4 C -0.095 4.095 5 C 0.446 3.554 6 O -0.540 6.540 7 O -0.362 6.362 8 C 0.302 3.698 9 H 0.043 0.957 10 C -0.556 4.556 11 H 0.073 0.927 12 C 0.024 3.976 13 N -0.890 5.890 14 Si 0.979 3.021 15 H -0.275 1.275 16 H -0.275 1.275 17 H -0.261 1.261 18 C -0.008 4.008 19 C -0.190 4.190 20 C -0.229 4.229 21 C -0.072 4.072 22 O -0.196 6.196 23 C -0.240 4.240 24 C 0.051 3.949 25 N -0.333 5.333 26 N -0.382 5.382 27 C 0.094 3.906 28 C 0.064 3.936 29 H 0.062 0.938 30 H 0.045 0.955 31 H 0.061 0.939 32 H 0.121 0.879 33 H 0.114 0.886 34 H 0.270 0.730 35 H 0.125 0.875 36 H 0.165 0.835 37 H 0.239 0.761 38 H 0.194 0.806 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.113 0.887 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.858 -1.325 -18.017 19.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.006 4.006 3 H 0.093 0.907 4 C -0.132 4.132 5 C 0.291 3.709 6 O -0.430 6.430 7 O -0.279 6.279 8 C 0.248 3.752 9 H 0.061 0.939 10 C -0.593 4.593 11 H 0.091 0.909 12 C -0.179 4.179 13 N -0.525 5.525 14 Si 0.802 3.198 15 H -0.201 1.201 16 H -0.200 1.200 17 H -0.185 1.185 18 C -0.058 4.058 19 C -0.210 4.210 20 C -0.248 4.248 21 C -0.138 4.138 22 O -0.093 6.093 23 C -0.251 4.251 24 C -0.135 4.135 25 N -0.155 5.155 26 N -0.164 5.164 27 C -0.046 4.046 28 C -0.083 4.083 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.139 0.861 33 H 0.132 0.868 34 H 0.079 0.921 35 H 0.143 0.857 36 H 0.182 0.818 37 H 0.255 0.745 38 H 0.211 0.789 39 H 0.103 0.897 40 H 0.108 0.892 41 H 0.131 0.869 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 7.082 -2.001 -19.050 20.422 hybrid contribution -0.650 0.783 1.915 2.169 sum 6.431 -1.218 -17.134 18.342 Atomic orbital electron populations 1.21891 0.94505 1.02144 1.01743 1.19012 0.95716 0.97814 0.88057 0.90694 1.21571 1.04469 1.00179 0.87011 1.24656 0.75623 0.84416 0.86167 1.90564 1.38858 1.26128 1.87461 1.86538 1.72122 1.53306 1.15932 1.18707 0.88147 0.86757 0.81577 0.93937 1.21178 1.49060 0.94372 0.94655 0.90869 1.25806 0.93757 0.96959 1.01379 1.70157 1.43464 1.11819 1.27029 0.85238 0.78079 0.78833 0.77639 1.20051 1.19967 1.18502 1.23402 0.81402 0.96450 1.04583 1.21346 0.98801 0.94668 1.06142 1.22063 0.92124 1.02226 1.08425 1.24663 0.99648 0.84188 1.05300 1.83961 1.18809 1.38297 1.68257 1.19893 1.09324 0.95516 1.00385 1.24033 0.98977 0.96509 0.93948 1.77287 1.14564 1.07586 1.16105 1.48786 1.39789 1.07651 1.20188 1.22171 0.94425 1.05364 0.82666 1.22804 0.98856 0.96669 0.89997 0.91867 0.93565 0.92040 0.86113 0.86830 0.92055 0.85659 0.81791 0.74469 0.78888 0.89738 0.89195 0.86853 0.78169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.82 8.82 71.98 0.64 -3.18 16 2 C 0.01 0.35 2.40 -11.54 -0.03 0.32 16 3 H 0.07 1.99 7.92 -2.39 -0.02 1.97 16 4 C -0.09 -2.67 5.15 29.85 0.15 -2.52 16 5 C 0.45 18.33 7.64 71.24 0.54 18.87 16 6 O -0.54 -24.84 13.19 21.96 0.29 -24.55 16 7 O -0.36 -17.63 9.84 -48.78 -0.48 -18.11 16 8 C 0.30 16.69 2.41 29.10 0.07 16.76 16 9 H 0.04 2.59 7.16 -2.38 -0.02 2.57 16 10 C -0.56 -31.65 8.89 25.60 0.23 -31.42 16 11 H 0.07 4.09 7.81 -2.91 -0.02 4.07 16 12 C 0.02 1.33 5.30 84.65 0.45 1.78 16 13 N -0.89 -50.24 10.48 21.45 0.22 -50.01 16 14 Si 0.98 43.07 29.54 68.60 2.03 45.10 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 18 C -0.01 -0.42 5.67 24.83 0.14 -0.28 16 19 C -0.19 -9.70 9.04 22.19 0.20 -9.50 16 20 C -0.23 -9.49 10.91 22.19 0.24 -9.25 16 21 C -0.07 -2.78 12.09 66.97 0.81 -1.97 16 22 O -0.20 -9.54 10.63 0.86 0.01 -9.53 16 23 C -0.24 -5.18 4.80 -20.15 -0.10 -5.27 16 24 C 0.05 1.12 11.54 85.23 0.98 2.10 16 25 N -0.33 -7.95 12.58 -57.03 -0.72 -8.66 16 26 N -0.38 -7.06 4.01 -369.56 -1.48 -8.54 16 27 C 0.09 0.85 11.47 127.77 1.47 2.32 16 28 C 0.06 1.14 11.38 83.54 0.95 2.09 16 29 H 0.06 1.46 8.02 -2.39 -0.02 1.44 16 30 H 0.05 1.52 5.96 -2.39 -0.01 1.50 16 31 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.12 2.93 8.14 -2.38 -0.02 2.91 16 33 H 0.11 2.90 8.14 -2.39 -0.02 2.88 16 34 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 35 H 0.13 6.79 7.49 -2.91 -0.02 6.76 16 36 H 0.16 5.50 8.06 -2.91 -0.02 5.47 16 37 H 0.24 6.22 8.06 -2.91 -0.02 6.20 16 38 H 0.19 3.50 8.06 -2.91 -0.02 3.47 16 39 H 0.08 0.60 8.14 -2.39 -0.02 0.59 16 40 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 0.40 8.14 -2.39 -0.02 0.39 16 42 H 0.20 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -75.28 362.84 7.64 -67.64 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: 1.03 Total: 25.83 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 6.75 Total: -19.15 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -1.98 Total: -67.22 kcal Atomic # 8 Polarization: -52.01 SS G_CDS: -0.18 Total: -52.19 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -75.28 7.64 -67.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512374.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.318 kcal (2) G-P(sol) polarization free energy of solvation -75.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds