Wall clock time and date at job start Tue Mar 31 2020 12:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47072 * 2 1 4 4 C 1.53005 * 109.47195 * 240.00624 * 2 1 3 5 5 C 1.50699 * 109.47414 * 65.00041 * 4 2 1 6 6 O 1.20827 * 119.99829 * 359.97438 * 5 4 2 7 7 O 1.34223 * 119.99913 * 180.02562 * 5 4 2 8 8 C 1.45205 * 116.99991 * 179.97438 * 7 5 4 9 9 H 1.09005 * 109.46861 * 30.00476 * 8 7 5 10 10 C 1.50697 * 109.47108 * 149.99505 * 8 7 5 11 11 H 1.08008 * 119.99634 * 115.39516 * 10 8 7 12 12 C 1.37872 * 120.00508 * 295.39869 * 10 8 7 13 13 N 1.31519 * 120.00352 * 173.37784 * 12 10 8 14 14 Si 1.86799 * 119.99751 * 353.38068 * 12 10 8 15 15 H 1.48505 * 109.47019 * 85.53003 * 14 12 10 16 16 H 1.48502 * 109.47139 * 205.52608 * 14 12 10 17 17 H 1.48499 * 109.47491 * 325.52721 * 14 12 10 18 18 C 1.50701 * 109.47550 * 270.00221 * 8 7 5 19 19 C 1.34511 * 125.78911 * 144.74781 * 18 8 7 20 20 C 1.41385 * 106.83526 * 179.97438 * 19 18 8 21 21 C 1.34510 * 106.84422 * 0.02562 * 20 19 18 22 22 O 1.34299 * 108.41956 * 359.73512 * 21 20 19 23 23 C 1.50693 * 109.47324 * 120.00487 * 2 1 3 24 24 C 1.39873 * 126.04050 * 59.69046 * 23 2 1 25 25 N 1.30835 * 108.20038 * 179.82307 * 24 23 2 26 26 N 1.40082 * 108.20705 * 0.43660 * 25 24 23 27 27 C 1.46508 * 126.03823 * 179.73990 * 26 25 24 28 28 C 1.34943 * 107.92877 * 359.72263 * 26 25 24 29 29 H 1.09003 * 109.47077 * 59.99903 * 1 2 3 30 30 H 1.09005 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47721 * 299.99743 * 1 2 3 32 32 H 1.09002 * 109.46792 * 185.00211 * 4 2 1 33 33 H 1.08998 * 109.46670 * 304.99418 * 4 2 1 34 34 H 0.97000 * 120.00127 * 180.02562 * 13 12 10 35 35 H 1.07992 * 126.58488 * 0.04065 * 19 18 8 36 36 H 1.07999 * 126.57816 * 179.97438 * 20 19 18 37 37 H 1.08002 * 125.79384 * 180.02562 * 21 20 19 38 38 H 1.07995 * 125.89682 * 0.02562 * 24 23 2 39 39 H 1.09000 * 109.46967 * 269.97813 * 27 26 25 40 40 H 1.09000 * 109.46876 * 29.97785 * 27 26 25 41 41 H 1.08995 * 109.47071 * 149.97810 * 27 26 25 42 42 H 1.07995 * 126.13171 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6414 0.0572 -2.4766 6 8 1.0133 1.0833 -2.3637 7 8 1.9832 -0.3898 -3.6952 8 6 1.5652 0.4107 -4.8323 9 1 1.5148 1.4595 -4.5393 10 6 2.5597 0.2495 -5.9529 11 1 2.2575 -0.2136 -6.8807 12 6 3.8554 0.6930 -5.7939 13 7 4.7562 0.4371 -6.7174 14 14 4.3317 1.6574 -4.2666 15 1 4.6835 0.7138 -3.1751 16 1 5.5012 2.5205 -4.5708 17 1 3.1892 2.5044 -3.8396 18 6 0.2065 -0.0469 -5.2966 19 6 -0.7630 0.7433 -5.7916 20 6 -1.8588 -0.0960 -6.0979 21 6 -1.4936 -1.3486 -5.7713 22 8 -0.2397 -1.3136 -5.2916 23 6 2.0323 -0.7105 1.2303 24 6 1.7685 -2.0392 1.5787 25 7 2.3776 -2.2941 2.7083 26 7 3.0409 -1.1310 3.1201 27 6 3.8407 -0.9804 4.3383 28 6 2.8135 -0.1740 2.1964 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 3.1263 -0.7994 -1.2056 33 1 1.6054 -1.7197 -1.2953 34 1 5.6678 0.7488 -6.6053 35 1 -0.7135 1.8132 -5.9296 36 1 -2.8075 0.2102 -6.5135 37 1 -2.1034 -2.2333 -5.8809 38 1 1.1687 -2.7354 1.0115 39 1 3.2001 -0.6462 5.1545 40 1 4.2905 -1.9386 4.5984 41 1 4.6264 -0.2444 4.1684 42 1 3.1882 0.8385 2.2229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650512377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:10 Heat of formation + Delta-G solvation = 7.036702 kcal Electronic energy + Delta-G solvation = -26564.601045 eV Core-core repulsion = 22706.727453 eV Total energy + Delta-G solvation = -3857.873591 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.84920 -41.34973 -39.64363 -36.33677 -34.91379 -33.03908 -32.85282 -32.29970 -30.62899 -29.74969 -27.96387 -26.93637 -26.64226 -23.27243 -22.55356 -21.27481 -21.10063 -20.51744 -19.58627 -19.24247 -17.44032 -17.22999 -16.80555 -16.44934 -15.83630 -15.58689 -15.19619 -15.12800 -14.62716 -14.47106 -13.90023 -13.75527 -13.50304 -13.09504 -12.97312 -12.73240 -12.69690 -12.47585 -12.14605 -12.09556 -12.02939 -11.73800 -11.49965 -11.27219 -11.01830 -10.94873 -10.88570 -10.42043 -10.16988 -9.85165 -9.70280 -9.55717 -9.52303 -9.26087 -8.88453 -8.44791 -7.74339 -6.44059 -4.52885 1.77530 2.38881 2.43209 2.71038 2.93508 3.15368 3.20950 3.25967 3.28598 3.61011 3.79520 4.17577 4.34838 4.71241 4.86220 4.90927 4.94291 5.06211 5.11552 5.25849 5.32842 5.38741 5.60055 5.62152 5.64222 5.71086 5.74253 5.84643 5.91252 6.06324 6.19566 6.33988 6.41664 6.42448 6.49294 6.56068 6.64130 6.73553 6.87242 7.10306 7.12627 7.50038 7.58904 7.89467 8.09840 8.59538 8.67275 9.13218 10.64828 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004034 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.807155 B = 6939.814195 C = 8411.751367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.001 3.999 3 H 0.082 0.918 4 C -0.114 4.114 5 C 0.446 3.554 6 O -0.522 6.522 7 O -0.351 6.351 8 C 0.253 3.747 9 H 0.081 0.919 10 C -0.514 4.514 11 H 0.091 0.909 12 C 0.096 3.904 13 N -0.863 5.863 14 Si 0.867 3.133 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.256 1.256 18 C 0.031 3.969 19 C -0.226 4.226 20 C -0.212 4.212 21 C -0.069 4.069 22 O -0.166 6.166 23 C -0.223 4.223 24 C 0.058 3.942 25 N -0.301 5.301 26 N -0.381 5.381 27 C 0.104 3.896 28 C 0.055 3.945 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.051 0.949 32 H 0.098 0.902 33 H 0.101 0.899 34 H 0.274 0.726 35 H 0.143 0.857 36 H 0.140 0.860 37 H 0.194 0.806 38 H 0.182 0.818 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.086 0.914 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.021 -1.389 16.836 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 H 0.100 0.900 4 C -0.152 4.152 5 C 0.290 3.710 6 O -0.412 6.412 7 O -0.268 6.268 8 C 0.202 3.798 9 H 0.099 0.901 10 C -0.549 4.549 11 H 0.109 0.891 12 C -0.113 4.113 13 N -0.498 5.498 14 Si 0.692 3.308 15 H -0.191 1.191 16 H -0.207 1.207 17 H -0.180 1.180 18 C -0.020 4.020 19 C -0.245 4.245 20 C -0.232 4.232 21 C -0.137 4.137 22 O -0.061 6.061 23 C -0.234 4.234 24 C -0.129 4.129 25 N -0.122 5.122 26 N -0.164 5.164 27 C -0.038 4.038 28 C -0.090 4.090 29 H 0.096 0.904 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.084 0.916 35 H 0.161 0.839 36 H 0.158 0.842 37 H 0.210 0.790 38 H 0.199 0.801 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.500 -2.176 17.888 18.574 hybrid contribution 0.014 1.237 -0.110 1.242 sum -4.486 -0.939 17.779 18.360 Atomic orbital electron populations 1.21933 0.94031 1.01633 1.02839 1.19197 0.96165 0.98284 0.88249 0.89953 1.21523 1.03624 1.00206 0.89866 1.23705 0.76312 0.84347 0.86663 1.90540 1.38068 1.24882 1.87739 1.87091 1.70660 1.54675 1.14368 1.19763 0.85646 0.91731 0.82698 0.90139 1.20869 0.94471 1.41869 0.97730 0.89064 1.24975 0.95739 0.94258 0.96283 1.69891 1.03308 1.42372 1.34180 0.86937 0.79278 0.80907 0.83673 1.19063 1.20706 1.17977 1.23202 0.96820 0.80726 1.01291 1.21408 0.93634 1.00743 1.08711 1.21684 1.00565 0.93323 1.07605 1.23849 0.85258 0.99525 1.05062 1.84077 1.27130 1.30042 1.64844 1.20063 1.07699 0.95423 1.00262 1.23769 0.99024 0.96142 0.93929 1.77331 1.13496 1.05929 1.15421 1.48419 1.40512 1.08349 1.19093 1.21814 0.94339 1.03997 0.83641 1.22349 1.00286 0.95686 0.90706 0.90419 0.93159 0.93035 0.88352 0.88098 0.91611 0.83914 0.84198 0.78966 0.80071 0.90951 0.89410 0.89572 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.82 37.16 0.33 -1.66 16 2 C 0.00 0.01 2.40 -91.77 -0.22 -0.21 16 3 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 4 C -0.11 -1.80 5.15 -27.88 -0.14 -1.94 16 5 C 0.45 9.18 6.98 36.00 0.25 9.43 16 6 O -0.52 -11.37 13.19 -18.75 -0.25 -11.62 16 7 O -0.35 -8.35 8.56 -41.95 -0.36 -8.71 16 8 C 0.25 6.32 1.72 -29.04 -0.05 6.27 16 9 H 0.08 2.05 5.75 -51.93 -0.30 1.75 16 10 C -0.51 -14.38 9.30 -34.44 -0.32 -14.70 16 11 H 0.09 2.76 7.99 -52.48 -0.42 2.34 16 12 C 0.10 2.68 5.47 -17.82 -0.10 2.58 16 13 N -0.86 -24.97 13.96 55.43 0.77 -24.20 16 14 Si 0.87 20.96 26.02 -169.99 -4.42 16.54 16 15 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 17 H -0.26 -6.15 6.51 56.52 0.37 -5.78 16 18 C 0.03 0.71 6.13 -35.63 -0.22 0.49 16 19 C -0.23 -4.65 10.81 -39.70 -0.43 -5.08 16 20 C -0.21 -3.71 10.91 -39.70 -0.43 -4.14 16 21 C -0.07 -1.20 12.09 29.41 0.36 -0.84 16 22 O -0.17 -3.61 10.64 2.34 0.02 -3.58 16 23 C -0.22 -2.77 4.80 -105.05 -0.50 -3.27 16 24 C 0.06 0.71 11.54 -17.36 -0.20 0.51 16 25 N -0.30 -3.97 12.58 30.62 0.39 -3.59 16 26 N -0.38 -4.18 4.01 -68.16 -0.27 -4.46 16 27 C 0.10 0.66 11.47 59.85 0.69 1.35 16 28 C 0.06 0.60 11.38 -17.22 -0.20 0.41 16 29 H 0.08 1.24 5.96 -51.93 -0.31 0.94 16 30 H 0.05 0.61 8.02 -51.93 -0.42 0.20 16 31 H 0.05 0.63 8.14 -51.94 -0.42 0.21 16 32 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.10 1.40 8.14 -51.93 -0.42 0.98 16 34 H 0.27 7.32 8.31 -40.82 -0.34 6.99 16 35 H 0.14 2.72 8.06 -52.49 -0.42 2.30 16 36 H 0.14 1.95 8.06 -52.49 -0.42 1.53 16 37 H 0.19 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.18 1.87 8.06 -52.49 -0.42 1.44 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 40 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.17 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 361.71 15.07 5.45 5.45 Total: -1.00 -33.80 361.71 -5.53 -39.34 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.67 Total: 5.63 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: -1.19 Total: -10.81 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.89 Total: -32.24 kcal Atomic # 8 Polarization: -23.33 SS G_CDS: -0.58 Total: -23.91 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.42 Total: 16.54 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -33.80 -5.53 -39.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.373 kcal (2) G-P(sol) polarization free energy of solvation -33.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds