Wall clock time and date at job start Tue Mar 31 2020 12:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47072 * 2 1 4 4 C 1.53005 * 109.47195 * 240.00624 * 2 1 3 5 5 C 1.50699 * 109.47414 * 65.00041 * 4 2 1 6 6 O 1.20827 * 119.99829 * 359.97438 * 5 4 2 7 7 O 1.34223 * 119.99913 * 180.02562 * 5 4 2 8 8 C 1.45205 * 116.99991 * 179.97438 * 7 5 4 9 9 H 1.09005 * 109.46861 * 30.00476 * 8 7 5 10 10 C 1.50697 * 109.47108 * 149.99505 * 8 7 5 11 11 H 1.08008 * 119.99634 * 115.39516 * 10 8 7 12 12 C 1.37872 * 120.00508 * 295.39869 * 10 8 7 13 13 N 1.31519 * 120.00352 * 173.37784 * 12 10 8 14 14 Si 1.86799 * 119.99751 * 353.38068 * 12 10 8 15 15 H 1.48505 * 109.47019 * 85.53003 * 14 12 10 16 16 H 1.48502 * 109.47139 * 205.52608 * 14 12 10 17 17 H 1.48499 * 109.47491 * 325.52721 * 14 12 10 18 18 C 1.50701 * 109.47550 * 270.00221 * 8 7 5 19 19 C 1.34511 * 125.78911 * 144.74781 * 18 8 7 20 20 C 1.41385 * 106.83526 * 179.97438 * 19 18 8 21 21 C 1.34510 * 106.84422 * 0.02562 * 20 19 18 22 22 O 1.34299 * 108.41956 * 359.73512 * 21 20 19 23 23 C 1.50693 * 109.47324 * 120.00487 * 2 1 3 24 24 C 1.39873 * 126.04050 * 59.69046 * 23 2 1 25 25 N 1.30835 * 108.20038 * 179.82307 * 24 23 2 26 26 N 1.40082 * 108.20705 * 0.43660 * 25 24 23 27 27 C 1.46508 * 126.03823 * 179.73990 * 26 25 24 28 28 C 1.34943 * 107.92877 * 359.72263 * 26 25 24 29 29 H 1.09003 * 109.47077 * 59.99903 * 1 2 3 30 30 H 1.09005 * 109.47157 * 179.97438 * 1 2 3 31 31 H 1.08989 * 109.47721 * 299.99743 * 1 2 3 32 32 H 1.09002 * 109.46792 * 185.00211 * 4 2 1 33 33 H 1.08998 * 109.46670 * 304.99418 * 4 2 1 34 34 H 0.97000 * 120.00127 * 180.02562 * 13 12 10 35 35 H 1.07992 * 126.58488 * 0.04065 * 19 18 8 36 36 H 1.07999 * 126.57816 * 179.97438 * 20 19 18 37 37 H 1.08002 * 125.79384 * 180.02562 * 21 20 19 38 38 H 1.07995 * 125.89682 * 0.02562 * 24 23 2 39 39 H 1.09000 * 109.46967 * 269.97813 * 27 26 25 40 40 H 1.09000 * 109.46876 * 29.97785 * 27 26 25 41 41 H 1.08995 * 109.47071 * 149.97810 * 27 26 25 42 42 H 1.07995 * 126.13171 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.6414 0.0572 -2.4766 6 8 1.0133 1.0833 -2.3637 7 8 1.9832 -0.3898 -3.6952 8 6 1.5652 0.4107 -4.8323 9 1 1.5148 1.4595 -4.5393 10 6 2.5597 0.2495 -5.9529 11 1 2.2575 -0.2136 -6.8807 12 6 3.8554 0.6930 -5.7939 13 7 4.7562 0.4371 -6.7174 14 14 4.3317 1.6574 -4.2666 15 1 4.6835 0.7138 -3.1751 16 1 5.5012 2.5205 -4.5708 17 1 3.1892 2.5044 -3.8396 18 6 0.2065 -0.0469 -5.2966 19 6 -0.7630 0.7433 -5.7916 20 6 -1.8588 -0.0960 -6.0979 21 6 -1.4936 -1.3486 -5.7713 22 8 -0.2397 -1.3136 -5.2916 23 6 2.0323 -0.7105 1.2303 24 6 1.7685 -2.0392 1.5787 25 7 2.3776 -2.2941 2.7083 26 7 3.0409 -1.1310 3.1201 27 6 3.8407 -0.9804 4.3383 28 6 2.8135 -0.1740 2.1964 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5137 0.8899 32 1 3.1263 -0.7994 -1.2056 33 1 1.6054 -1.7197 -1.2953 34 1 5.6678 0.7488 -6.6053 35 1 -0.7135 1.8132 -5.9296 36 1 -2.8075 0.2102 -6.5135 37 1 -2.1034 -2.2333 -5.8809 38 1 1.1687 -2.7354 1.0115 39 1 3.2001 -0.6462 5.1545 40 1 4.2905 -1.9386 4.5984 41 1 4.6264 -0.2444 4.1684 42 1 3.1882 0.8385 2.2229 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650512377.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:09 Heat of formation + Delta-G solvation = -13.577879 kcal Electronic energy + Delta-G solvation = -26565.494960 eV Core-core repulsion = 22706.727453 eV Total energy + Delta-G solvation = -3858.767507 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.40807 -42.22118 -41.28945 -37.93256 -36.17584 -35.08155 -33.89956 -33.65736 -32.35557 -30.68753 -29.25329 -28.65322 -27.36031 -24.96553 -23.85210 -22.64266 -22.18950 -21.79252 -21.10018 -20.39807 -19.46440 -18.75174 -18.34001 -17.55324 -17.37297 -16.80370 -16.72415 -16.34726 -16.29039 -15.43805 -15.29748 -15.11776 -14.69333 -14.57183 -14.02147 -13.88296 -13.76142 -13.66198 -13.57217 -13.46982 -13.34798 -13.31778 -13.12000 -12.80339 -12.48384 -12.17346 -12.08675 -11.99786 -11.89811 -11.54458 -11.37334 -11.21406 -10.97284 -10.76970 -10.35075 -9.33929 -9.29476 -8.56925 -6.71617 0.87615 0.95473 1.21571 1.23141 1.31766 1.36878 1.67324 1.73989 1.80352 2.02051 2.15101 2.28445 2.94471 3.61137 3.73272 3.91289 4.00033 4.10666 4.16618 4.19793 4.29470 4.30898 4.40276 4.45511 4.51763 4.60557 4.66690 4.70722 4.74593 4.84668 4.93468 4.98344 5.04291 5.08028 5.18400 5.22928 5.35951 5.43671 5.66145 5.70219 5.81813 6.01199 6.14402 6.33203 6.37541 6.74047 6.94073 7.00252 8.56651 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013131 B = 0.004034 C = 0.003328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.807155 B = 6939.814195 C = 8411.751367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.012 3.988 3 H 0.076 0.924 4 C -0.107 4.107 5 C 0.439 3.561 6 O -0.535 6.535 7 O -0.367 6.367 8 C 0.264 3.736 9 H 0.069 0.931 10 C -0.531 4.531 11 H 0.051 0.949 12 C 0.053 3.947 13 N -0.905 5.905 14 Si 0.920 3.080 15 H -0.252 1.252 16 H -0.266 1.266 17 H -0.258 1.258 18 C -0.018 4.018 19 C -0.227 4.227 20 C -0.216 4.216 21 C -0.056 4.056 22 O -0.189 6.189 23 C -0.241 4.241 24 C 0.051 3.949 25 N -0.333 5.333 26 N -0.382 5.382 27 C 0.094 3.906 28 C 0.063 3.937 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.120 0.880 34 H 0.280 0.720 35 H 0.149 0.851 36 H 0.180 0.820 37 H 0.244 0.756 38 H 0.194 0.806 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.112 0.888 42 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.871 -1.365 19.248 20.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.008 4.008 3 H 0.095 0.905 4 C -0.145 4.145 5 C 0.284 3.716 6 O -0.426 6.426 7 O -0.284 6.284 8 C 0.212 3.788 9 H 0.087 0.913 10 C -0.567 4.567 11 H 0.069 0.931 12 C -0.152 4.152 13 N -0.542 5.542 14 Si 0.742 3.258 15 H -0.176 1.176 16 H -0.190 1.190 17 H -0.182 1.182 18 C -0.069 4.069 19 C -0.246 4.246 20 C -0.235 4.235 21 C -0.122 4.122 22 O -0.086 6.086 23 C -0.253 4.253 24 C -0.135 4.135 25 N -0.155 5.155 26 N -0.164 5.164 27 C -0.046 4.046 28 C -0.084 4.084 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.123 0.877 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.167 0.833 36 H 0.197 0.803 37 H 0.260 0.740 38 H 0.211 0.789 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.130 0.870 42 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.348 -2.160 20.324 21.127 hybrid contribution 0.146 1.182 -0.837 1.456 sum -5.202 -0.978 19.487 20.193 Atomic orbital electron populations 1.21864 0.94073 1.02103 1.01909 1.19042 0.96063 0.97818 0.87846 0.90526 1.21678 1.04169 1.00604 0.88032 1.24603 0.75801 0.84559 0.86598 1.90530 1.38621 1.25740 1.87724 1.86971 1.71383 1.54571 1.15488 1.19219 0.86133 0.91312 0.82159 0.91314 1.20910 0.95691 1.42114 0.97948 0.93074 1.25690 0.95483 0.94903 0.99098 1.69978 1.03982 1.44023 1.36184 0.86113 0.79250 0.79943 0.80489 1.17612 1.19040 1.18204 1.22955 0.97067 0.81992 1.04875 1.21778 0.94257 1.01403 1.07172 1.22108 1.01174 0.92677 1.07546 1.24941 0.83636 1.01510 1.02159 1.84034 1.29268 1.29526 1.65752 1.19920 1.09364 0.95626 1.00384 1.24017 0.99031 0.96485 0.93929 1.77283 1.14621 1.07494 1.16056 1.48787 1.40005 1.07637 1.19931 1.22177 0.94881 1.05045 0.82525 1.22812 0.98984 0.96701 0.89931 0.93256 0.92040 0.91869 0.87651 0.86200 0.91025 0.83318 0.80258 0.73953 0.78941 0.89503 0.89227 0.86984 0.78141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.82 71.98 0.63 -3.01 16 2 C 0.01 0.31 2.40 -11.54 -0.03 0.28 16 3 H 0.08 2.05 7.92 -2.39 -0.02 2.03 16 4 C -0.11 -3.23 5.15 29.85 0.15 -3.07 16 5 C 0.44 17.97 6.98 71.24 0.50 18.47 16 6 O -0.54 -23.38 13.19 21.96 0.29 -23.09 16 7 O -0.37 -17.72 8.56 -48.75 -0.42 -18.13 16 8 C 0.26 13.61 1.72 29.10 0.05 13.66 16 9 H 0.07 3.63 5.75 -2.38 -0.01 3.62 16 10 C -0.53 -31.19 9.30 25.60 0.24 -30.95 16 11 H 0.05 3.31 7.99 -2.91 -0.02 3.29 16 12 C 0.05 3.04 5.47 84.65 0.46 3.51 16 13 N -0.91 -54.19 13.96 21.45 0.30 -53.89 16 14 Si 0.92 43.68 26.02 68.60 1.78 45.46 16 15 H -0.25 -11.31 7.11 99.48 0.71 -10.60 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.26 -12.21 6.51 99.48 0.65 -11.57 16 18 C -0.02 -0.87 6.13 24.83 0.15 -0.72 16 19 C -0.23 -9.32 10.81 22.19 0.24 -9.09 16 20 C -0.22 -7.06 10.91 22.19 0.24 -6.82 16 21 C -0.06 -1.80 12.09 66.97 0.81 -0.99 16 22 O -0.19 -8.25 10.64 0.79 0.01 -8.24 16 23 C -0.24 -5.45 4.80 -20.14 -0.10 -5.55 16 24 C 0.05 1.17 11.54 85.24 0.98 2.15 16 25 N -0.33 -8.20 12.58 -57.03 -0.72 -8.92 16 26 N -0.38 -7.38 4.01 -369.55 -1.48 -8.87 16 27 C 0.09 0.92 11.47 127.77 1.47 2.39 16 28 C 0.06 1.19 11.38 83.54 0.95 2.14 16 29 H 0.05 1.55 5.96 -2.39 -0.01 1.54 16 30 H 0.06 1.40 8.02 -2.38 -0.02 1.39 16 31 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.11 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.12 3.14 8.14 -2.39 -0.02 3.12 16 34 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 35 H 0.15 5.72 8.06 -2.91 -0.02 5.70 16 36 H 0.18 4.30 8.06 -2.91 -0.02 4.28 16 37 H 0.24 4.96 8.06 -2.91 -0.02 4.94 16 38 H 0.19 3.66 8.06 -2.91 -0.02 3.64 16 39 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 42 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -77.04 361.71 7.49 -69.55 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.97 Total: 23.71 kcal Atomic # 6 Polarization: -24.35 SS G_CDS: 6.76 Total: -17.59 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: -1.90 Total: -71.68 kcal Atomic # 8 Polarization: -49.34 SS G_CDS: -0.12 Total: -49.46 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.78 Total: 45.46 kcal Total: -77.04 7.49 -69.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512377.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.977 kcal (2) G-P(sol) polarization free energy of solvation -77.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds