Wall clock time and date at job start Tue Mar 31 2020 12:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47195 * 2 1 4 4 C 1.53002 * 109.47178 * 120.00230 * 2 1 3 5 5 C 1.50693 * 109.46947 * 294.99747 * 4 2 1 6 6 O 1.20823 * 120.00257 * 0.02562 * 5 4 2 7 7 O 1.34228 * 119.99949 * 179.97438 * 5 4 2 8 8 C 1.45201 * 117.00151 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47445 * 330.00280 * 8 7 5 10 10 C 1.50705 * 109.47526 * 210.00007 * 8 7 5 11 11 H 1.07993 * 120.00080 * 273.48700 * 10 8 7 12 12 C 1.37877 * 119.99606 * 93.47960 * 10 8 7 13 13 N 1.31520 * 119.99581 * 181.27896 * 12 10 8 14 14 Si 1.86796 * 120.00424 * 1.28794 * 12 10 8 15 15 H 1.48498 * 109.47451 * 84.87250 * 14 12 10 16 16 H 1.48503 * 109.47249 * 204.87880 * 14 12 10 17 17 H 1.48506 * 109.47069 * 324.87869 * 14 12 10 18 18 C 1.50705 * 109.47068 * 90.00344 * 8 7 5 19 19 C 1.34517 * 125.78640 * 216.36615 * 18 8 7 20 20 C 1.41386 * 106.83749 * 179.88736 * 19 18 8 21 21 C 1.34512 * 106.84065 * 0.36994 * 20 19 18 22 22 O 1.34302 * 108.42263 * 359.77459 * 21 20 19 23 23 C 1.50705 * 109.47330 * 239.99910 * 2 1 3 24 24 C 1.39862 * 126.04102 * 300.00403 * 23 2 1 25 25 N 1.30838 * 108.20359 * 179.97438 * 24 23 2 26 26 N 1.40078 * 108.20564 * 359.97438 * 25 24 23 27 27 C 1.46499 * 126.03731 * 180.02562 * 26 25 24 28 28 C 1.34947 * 107.92729 * 0.02562 * 26 25 24 29 29 H 1.08998 * 109.46621 * 299.99734 * 1 2 3 30 30 H 1.08995 * 109.46661 * 59.99627 * 1 2 3 31 31 H 1.08998 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47257 * 55.00079 * 4 2 1 33 33 H 1.09007 * 109.47165 * 175.00254 * 4 2 1 34 34 H 0.97004 * 119.99318 * 180.02562 * 13 12 10 35 35 H 1.07998 * 126.57970 * 0.02822 * 19 18 8 36 36 H 1.08000 * 126.57984 * 180.16356 * 20 19 18 37 37 H 1.08001 * 125.79202 * 179.74960 * 21 20 19 38 38 H 1.08005 * 125.90217 * 359.97438 * 24 23 2 39 39 H 1.09003 * 109.47126 * 269.97831 * 27 26 25 40 40 H 1.08997 * 109.47368 * 29.97634 * 27 26 25 41 41 H 1.09004 * 109.46964 * 149.98194 * 27 26 25 42 42 H 1.08000 * 126.12887 * 179.73324 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0134 1.0830 2.3637 7 8 1.9831 -0.3902 3.6951 8 6 1.5651 0.4103 4.8322 9 1 1.5147 1.4590 4.5394 10 6 2.5596 0.2489 5.9530 11 1 2.4576 -0.5680 6.6519 12 6 3.5998 1.1441 6.0858 13 7 4.4820 0.9888 7.0488 14 14 3.7558 2.5777 4.8984 15 1 2.9105 3.7043 5.3688 16 1 5.1734 3.0154 4.8344 17 1 3.3074 2.1528 3.5479 18 6 0.2065 -0.0476 5.2965 19 6 -0.7707 0.7452 5.7719 20 6 -1.8645 -0.0948 6.0834 21 6 -1.4873 -1.3516 5.7874 22 8 -0.2320 -1.3169 5.3112 23 6 2.0324 -0.7104 -1.2305 24 6 1.7735 -2.0408 -1.5759 25 7 2.3772 -2.2938 -2.7088 26 7 3.0398 -1.1305 -3.1209 27 6 3.8382 -0.9793 -4.3399 28 6 2.8129 -0.1736 -2.1968 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 1.2951 33 1 3.1264 -0.7995 1.2056 34 1 5.2136 1.6189 7.1424 35 1 -0.7287 1.8179 5.8905 36 1 -2.8185 0.2131 6.4853 37 1 -2.0912 -2.2382 5.9120 38 1 1.1781 -2.7388 -1.0060 39 1 4.8759 -1.2378 -4.1290 40 1 3.4490 -1.6410 -5.1136 41 1 3.7839 0.0536 -4.6840 42 1 3.1903 0.8380 -2.2217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650512390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:14 Heat of formation + Delta-G solvation = 2.134594 kcal Electronic energy + Delta-G solvation = -26435.560894 eV Core-core repulsion = 22577.474731 eV Total energy + Delta-G solvation = -3858.086163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.80989 -41.34484 -39.56394 -36.27342 -34.87497 -33.12731 -32.84891 -32.26608 -30.61570 -29.73974 -27.93510 -26.95213 -26.63927 -23.28404 -22.51247 -21.26081 -21.08450 -20.48569 -19.56860 -19.21387 -17.46784 -17.20443 -16.79939 -16.40143 -15.77968 -15.58332 -15.21138 -15.11844 -14.63637 -14.47075 -13.86887 -13.73326 -13.47056 -13.13788 -12.96083 -12.74906 -12.68122 -12.48707 -12.11914 -12.06640 -12.01596 -11.69355 -11.48360 -11.26645 -11.03067 -10.97497 -10.89784 -10.41067 -10.16879 -9.73792 -9.66140 -9.54825 -9.51919 -9.22625 -8.97097 -8.44230 -7.71914 -6.49589 -4.58677 1.77917 2.39321 2.46050 2.71675 3.00754 3.08749 3.19484 3.26323 3.30401 3.66693 3.81977 4.11027 4.34720 4.71678 4.86608 4.90988 4.95744 5.05576 5.11598 5.27691 5.32151 5.42348 5.62416 5.63288 5.66210 5.72599 5.75546 5.86079 5.99998 6.07951 6.16804 6.28220 6.43266 6.46190 6.50493 6.58266 6.64817 6.77531 6.87657 7.09290 7.16265 7.52294 7.59288 7.91102 8.07978 8.61598 8.72166 9.07048 10.59250 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.003826 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.450808 B = 7315.791916 C = 8690.819367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.001 3.999 3 H 0.082 0.918 4 C -0.112 4.112 5 C 0.449 3.551 6 O -0.526 6.526 7 O -0.354 6.354 8 C 0.254 3.746 9 H 0.079 0.921 10 C -0.507 4.507 11 H 0.089 0.911 12 C 0.091 3.909 13 N -0.858 5.858 14 Si 0.871 3.129 15 H -0.265 1.265 16 H -0.277 1.277 17 H -0.257 1.257 18 C 0.033 3.967 19 C -0.229 4.229 20 C -0.211 4.211 21 C -0.072 4.072 22 O -0.168 6.168 23 C -0.222 4.222 24 C 0.057 3.943 25 N -0.301 5.301 26 N -0.381 5.381 27 C 0.104 3.896 28 C 0.055 3.945 29 H 0.077 0.923 30 H 0.050 0.950 31 H 0.049 0.951 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.275 0.725 35 H 0.141 0.859 36 H 0.140 0.860 37 H 0.193 0.807 38 H 0.182 0.818 39 H 0.073 0.927 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.560 -1.906 -17.145 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.019 4.019 3 H 0.100 0.900 4 C -0.150 4.150 5 C 0.293 3.707 6 O -0.417 6.417 7 O -0.270 6.270 8 C 0.202 3.798 9 H 0.097 0.903 10 C -0.542 4.542 11 H 0.107 0.893 12 C -0.118 4.118 13 N -0.493 5.493 14 Si 0.696 3.304 15 H -0.190 1.190 16 H -0.203 1.203 17 H -0.181 1.181 18 C -0.018 4.018 19 C -0.248 4.248 20 C -0.230 4.230 21 C -0.139 4.139 22 O -0.063 6.063 23 C -0.234 4.234 24 C -0.129 4.129 25 N -0.122 5.122 26 N -0.164 5.164 27 C -0.038 4.038 28 C -0.091 4.091 29 H 0.096 0.904 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.086 0.914 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.210 0.790 38 H 0.199 0.801 39 H 0.091 0.909 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -4.061 -2.648 -18.164 18.800 hybrid contribution -0.149 1.560 0.311 1.597 sum -4.209 -1.089 -17.854 18.376 Atomic orbital electron populations 1.21932 0.94110 1.01591 1.02809 1.19198 0.96109 0.98293 0.88280 0.89970 1.21490 1.03561 1.00065 0.89876 1.23653 0.76191 0.84244 0.86645 1.90525 1.38396 1.25015 1.87755 1.87113 1.70747 1.54855 1.14308 1.19515 0.85896 0.91442 0.82901 0.90348 1.20809 1.10130 1.14994 1.08265 0.89290 1.25124 0.94117 0.97673 0.94868 1.69869 1.12863 1.36199 1.30361 0.86895 0.78332 0.82647 0.82504 1.19040 1.20276 1.18131 1.23317 0.96619 0.80665 1.01227 1.21362 0.93614 1.00616 1.09224 1.21667 1.00459 0.93220 1.07647 1.23822 0.85115 0.99413 1.05577 1.84075 1.27267 1.29969 1.65004 1.20072 1.07678 0.95328 1.00307 1.23769 0.99032 0.96133 0.93953 1.77331 1.13565 1.05941 1.15377 1.48417 1.40473 1.08413 1.19086 1.21812 0.94639 1.03391 0.83956 1.22350 1.00186 0.95732 0.90788 0.90423 0.93098 0.93197 0.88278 0.88337 0.91450 0.84079 0.84244 0.79026 0.80087 0.90852 0.89476 0.89623 0.81000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.82 37.16 0.33 -1.66 16 2 C 0.00 0.01 2.40 -91.77 -0.22 -0.21 16 3 H 0.08 1.16 7.92 -51.93 -0.41 0.75 16 4 C -0.11 -1.71 5.14 -27.88 -0.14 -1.85 16 5 C 0.45 9.19 7.57 36.00 0.27 9.46 16 6 O -0.53 -11.53 13.19 -18.75 -0.25 -11.78 16 7 O -0.35 -8.39 9.84 -41.81 -0.41 -8.80 16 8 C 0.25 6.36 1.96 -29.03 -0.06 6.31 16 9 H 0.08 1.99 4.56 -51.93 -0.24 1.75 16 10 C -0.51 -14.15 9.23 -34.44 -0.32 -14.47 16 11 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 12 C 0.09 2.51 5.47 -17.82 -0.10 2.41 16 13 N -0.86 -24.56 13.96 55.43 0.77 -23.79 16 14 Si 0.87 20.69 26.90 -169.99 -4.57 16.11 16 15 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.26 -6.13 6.91 56.52 0.39 -5.74 16 18 C 0.03 0.77 6.17 -35.62 -0.22 0.55 16 19 C -0.23 -4.81 10.81 -39.70 -0.43 -5.24 16 20 C -0.21 -3.75 10.91 -39.70 -0.43 -4.18 16 21 C -0.07 -1.26 12.09 29.42 0.36 -0.90 16 22 O -0.17 -3.67 10.64 2.92 0.03 -3.64 16 23 C -0.22 -2.71 4.80 -105.05 -0.50 -3.22 16 24 C 0.06 0.70 11.54 -17.37 -0.20 0.50 16 25 N -0.30 -3.92 12.58 30.62 0.39 -3.54 16 26 N -0.38 -4.12 4.01 -68.16 -0.27 -4.39 16 27 C 0.10 0.65 11.47 59.85 0.69 1.33 16 28 C 0.05 0.59 11.38 -17.22 -0.20 0.39 16 29 H 0.08 1.25 5.96 -51.93 -0.31 0.94 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.61 8.02 -51.93 -0.42 0.19 16 32 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.10 1.44 8.14 -51.92 -0.42 1.01 16 34 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.14 2.77 8.06 -52.49 -0.42 2.35 16 36 H 0.14 1.99 8.06 -52.49 -0.42 1.57 16 37 H 0.19 2.41 8.06 -52.49 -0.42 1.99 16 38 H 0.18 1.84 8.06 -52.48 -0.42 1.41 16 39 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 42 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 363.98 15.07 5.49 5.49 Total: -1.00 -33.78 363.98 -5.60 -39.38 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -5.59 Total: 5.74 kcal Atomic # 6 Polarization: -9.59 SS G_CDS: -1.18 Total: -10.77 kcal Atomic # 7 Polarization: -32.61 SS G_CDS: 0.89 Total: -31.72 kcal Atomic # 8 Polarization: -23.60 SS G_CDS: -0.63 Total: -24.23 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -4.57 Total: 16.11 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.78 -5.60 -39.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.512 kcal (2) G-P(sol) polarization free energy of solvation -33.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds