Wall clock time and date at job start Tue Mar 31 2020 12:48:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47195 * 2 1 4 4 C 1.53002 * 109.47178 * 120.00230 * 2 1 3 5 5 C 1.50693 * 109.46947 * 294.99747 * 4 2 1 6 6 O 1.20823 * 120.00257 * 0.02562 * 5 4 2 7 7 O 1.34228 * 119.99949 * 179.97438 * 5 4 2 8 8 C 1.45201 * 117.00151 * 180.02562 * 7 5 4 9 9 H 1.09004 * 109.47445 * 330.00280 * 8 7 5 10 10 C 1.50705 * 109.47526 * 210.00007 * 8 7 5 11 11 H 1.07993 * 120.00080 * 273.48700 * 10 8 7 12 12 C 1.37877 * 119.99606 * 93.47960 * 10 8 7 13 13 N 1.31520 * 119.99581 * 181.27896 * 12 10 8 14 14 Si 1.86796 * 120.00424 * 1.28794 * 12 10 8 15 15 H 1.48498 * 109.47451 * 84.87250 * 14 12 10 16 16 H 1.48503 * 109.47249 * 204.87880 * 14 12 10 17 17 H 1.48506 * 109.47069 * 324.87869 * 14 12 10 18 18 C 1.50705 * 109.47068 * 90.00344 * 8 7 5 19 19 C 1.34517 * 125.78640 * 216.36615 * 18 8 7 20 20 C 1.41386 * 106.83749 * 179.88736 * 19 18 8 21 21 C 1.34512 * 106.84065 * 0.36994 * 20 19 18 22 22 O 1.34302 * 108.42263 * 359.77459 * 21 20 19 23 23 C 1.50705 * 109.47330 * 239.99910 * 2 1 3 24 24 C 1.39862 * 126.04102 * 300.00403 * 23 2 1 25 25 N 1.30838 * 108.20359 * 179.97438 * 24 23 2 26 26 N 1.40078 * 108.20564 * 359.97438 * 25 24 23 27 27 C 1.46499 * 126.03731 * 180.02562 * 26 25 24 28 28 C 1.34947 * 107.92729 * 0.02562 * 26 25 24 29 29 H 1.08998 * 109.46621 * 299.99734 * 1 2 3 30 30 H 1.08995 * 109.46661 * 59.99627 * 1 2 3 31 31 H 1.08998 * 109.47195 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47257 * 55.00079 * 4 2 1 33 33 H 1.09007 * 109.47165 * 175.00254 * 4 2 1 34 34 H 0.97004 * 119.99318 * 180.02562 * 13 12 10 35 35 H 1.07998 * 126.57970 * 0.02822 * 19 18 8 36 36 H 1.08000 * 126.57984 * 180.16356 * 20 19 18 37 37 H 1.08001 * 125.79202 * 179.74960 * 21 20 19 38 38 H 1.08005 * 125.90217 * 359.97438 * 24 23 2 39 39 H 1.09003 * 109.47126 * 269.97831 * 27 26 25 40 40 H 1.08997 * 109.47368 * 29.97634 * 27 26 25 41 41 H 1.09004 * 109.46964 * 149.98194 * 27 26 25 42 42 H 1.08000 * 126.12887 * 179.73324 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0570 2.4765 6 8 1.0134 1.0830 2.3637 7 8 1.9831 -0.3902 3.6951 8 6 1.5651 0.4103 4.8322 9 1 1.5147 1.4590 4.5394 10 6 2.5596 0.2489 5.9530 11 1 2.4576 -0.5680 6.6519 12 6 3.5998 1.1441 6.0858 13 7 4.4820 0.9888 7.0488 14 14 3.7558 2.5777 4.8984 15 1 2.9105 3.7043 5.3688 16 1 5.1734 3.0154 4.8344 17 1 3.3074 2.1528 3.5479 18 6 0.2065 -0.0476 5.2965 19 6 -0.7707 0.7452 5.7719 20 6 -1.8645 -0.0948 6.0834 21 6 -1.4873 -1.3516 5.7874 22 8 -0.2320 -1.3169 5.3112 23 6 2.0324 -0.7104 -1.2305 24 6 1.7735 -2.0408 -1.5759 25 7 2.3772 -2.2938 -2.7088 26 7 3.0398 -1.1305 -3.1209 27 6 3.8382 -0.9793 -4.3399 28 6 2.8129 -0.1736 -2.1968 29 1 -0.3632 0.5138 0.8900 30 1 -0.3632 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 1.2951 33 1 3.1264 -0.7995 1.2056 34 1 5.2136 1.6189 7.1424 35 1 -0.7287 1.8179 5.8905 36 1 -2.8185 0.2131 6.4853 37 1 -2.0912 -2.2382 5.9120 38 1 1.1781 -2.7388 -1.0060 39 1 4.8759 -1.2378 -4.1290 40 1 3.4490 -1.6410 -5.1136 41 1 3.7839 0.0536 -4.6840 42 1 3.1903 0.8380 -2.2217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650512390.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:13 Heat of formation + Delta-G solvation = -18.389888 kcal Electronic energy + Delta-G solvation = -26436.450902 eV Core-core repulsion = 22577.474731 eV Total energy + Delta-G solvation = -3858.976171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.39042 -42.20676 -41.21304 -37.86242 -36.14361 -35.15740 -33.88130 -33.64513 -32.35143 -30.66996 -29.22842 -28.66360 -27.35195 -24.96584 -23.80623 -22.64410 -22.16836 -21.77723 -21.07862 -20.39021 -19.47680 -18.72670 -18.31430 -17.54731 -17.31405 -16.82680 -16.70677 -16.33971 -16.28479 -15.41237 -15.26629 -15.10106 -14.69185 -14.58783 -14.02179 -13.85646 -13.74461 -13.65840 -13.54390 -13.47372 -13.33616 -13.30208 -13.06724 -12.86637 -12.46934 -12.15631 -12.03454 -12.00106 -11.80547 -11.50333 -11.35468 -11.20185 -11.01366 -10.75997 -10.34051 -9.33431 -9.28428 -8.59671 -6.75408 0.88257 0.96572 1.21784 1.25122 1.34180 1.41980 1.69396 1.75000 1.81682 2.06792 2.12735 2.29051 2.95419 3.62295 3.75551 3.93227 4.03764 4.12362 4.17338 4.21026 4.25761 4.32240 4.40947 4.45927 4.52242 4.62690 4.69036 4.71524 4.76664 4.85654 4.94515 4.99895 5.04435 5.07998 5.19458 5.24705 5.37696 5.44903 5.67924 5.71117 5.80241 6.04940 6.15503 6.34010 6.38173 6.75155 6.94034 7.02386 8.54229 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.013252 B = 0.003826 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2112.450808 B = 7315.791916 C = 8690.819367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.013 3.987 3 H 0.075 0.925 4 C -0.103 4.103 5 C 0.442 3.558 6 O -0.541 6.541 7 O -0.371 6.371 8 C 0.263 3.737 9 H 0.072 0.928 10 C -0.525 4.525 11 H 0.045 0.955 12 C 0.048 3.952 13 N -0.902 5.902 14 Si 0.932 3.068 15 H -0.254 1.254 16 H -0.260 1.260 17 H -0.262 1.262 18 C -0.016 4.016 19 C -0.231 4.231 20 C -0.215 4.215 21 C -0.058 4.058 22 O -0.191 6.191 23 C -0.240 4.240 24 C 0.051 3.949 25 N -0.333 5.333 26 N -0.382 5.382 27 C 0.094 3.906 28 C 0.063 3.937 29 H 0.048 0.952 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.109 0.891 34 H 0.282 0.718 35 H 0.147 0.853 36 H 0.180 0.820 37 H 0.244 0.756 38 H 0.194 0.806 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.114 0.886 42 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.596 -1.481 -19.361 20.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.007 4.007 3 H 0.094 0.906 4 C -0.141 4.141 5 C 0.287 3.713 6 O -0.432 6.432 7 O -0.288 6.288 8 C 0.211 3.789 9 H 0.089 0.911 10 C -0.561 4.561 11 H 0.064 0.936 12 C -0.157 4.157 13 N -0.538 5.538 14 Si 0.753 3.247 15 H -0.178 1.178 16 H -0.185 1.185 17 H -0.186 1.186 18 C -0.067 4.067 19 C -0.250 4.250 20 C -0.234 4.234 21 C -0.124 4.124 22 O -0.087 6.087 23 C -0.252 4.252 24 C -0.135 4.135 25 N -0.155 5.155 26 N -0.164 5.164 27 C -0.046 4.046 28 C -0.084 4.084 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.136 0.864 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.165 0.835 36 H 0.197 0.803 37 H 0.260 0.740 38 H 0.210 0.790 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.132 0.868 42 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -5.093 -2.232 -20.400 21.144 hybrid contribution 0.057 1.329 0.948 1.634 sum -5.036 -0.903 -19.452 20.113 Atomic orbital electron populations 1.21863 0.94247 1.02032 1.01822 1.19031 0.95920 0.97796 0.87959 0.90641 1.21630 1.04303 1.00324 0.87841 1.24597 0.75614 0.84461 0.86628 1.90511 1.39020 1.25940 1.87764 1.86993 1.71511 1.54784 1.15508 1.19091 0.86238 0.91278 0.82293 0.91093 1.20819 1.11700 1.14265 1.09340 0.93630 1.25853 0.93468 1.00036 0.96363 1.69958 1.13880 1.37742 1.32207 0.85966 0.79268 0.79590 0.79855 1.17810 1.18475 1.18616 1.23087 0.96962 0.81917 1.04685 1.21740 0.94274 1.01275 1.07744 1.22095 1.01107 0.92588 1.07597 1.24923 0.83488 1.01436 1.02579 1.84033 1.29401 1.29427 1.65870 1.19918 1.09331 0.95519 1.00413 1.24013 0.99041 0.96477 0.93945 1.77283 1.14711 1.07498 1.16000 1.48782 1.39971 1.07683 1.19941 1.22175 0.94542 1.05385 0.82528 1.22807 0.98857 0.96736 0.90022 0.93339 0.91961 0.92091 0.86436 0.87321 0.90806 0.83514 0.80289 0.73967 0.78970 0.89828 0.89112 0.86811 0.78174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.67 8.82 71.98 0.64 -3.04 16 2 C 0.01 0.33 2.40 -11.54 -0.03 0.30 16 3 H 0.08 2.03 7.92 -2.39 -0.02 2.01 16 4 C -0.10 -3.06 5.14 29.85 0.15 -2.90 16 5 C 0.44 18.14 7.57 71.23 0.54 18.68 16 6 O -0.54 -23.83 13.19 21.97 0.29 -23.54 16 7 O -0.37 -18.06 9.84 -48.95 -0.48 -18.54 16 8 C 0.26 13.63 1.96 29.10 0.06 13.69 16 9 H 0.07 3.70 4.56 -2.38 -0.01 3.69 16 10 C -0.53 -30.90 9.23 25.60 0.24 -30.66 16 11 H 0.05 2.98 8.06 -2.91 -0.02 2.95 16 12 C 0.05 2.72 5.47 84.65 0.46 3.18 16 13 N -0.90 -53.45 13.96 21.45 0.30 -53.16 16 14 Si 0.93 43.39 26.90 68.60 1.85 45.23 16 15 H -0.25 -11.25 7.11 99.48 0.71 -10.54 16 16 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.26 -12.26 6.91 99.48 0.69 -11.57 16 18 C -0.02 -0.76 6.17 24.83 0.15 -0.60 16 19 C -0.23 -9.65 10.81 22.19 0.24 -9.41 16 20 C -0.22 -7.14 10.91 22.19 0.24 -6.89 16 21 C -0.06 -1.89 12.09 66.97 0.81 -1.08 16 22 O -0.19 -8.38 10.64 0.21 0.00 -8.37 16 23 C -0.24 -5.37 4.80 -20.14 -0.10 -5.47 16 24 C 0.05 1.15 11.54 85.23 0.98 2.14 16 25 N -0.33 -8.15 12.58 -57.02 -0.72 -8.87 16 26 N -0.38 -7.32 4.01 -369.56 -1.48 -8.80 16 27 C 0.09 0.91 11.47 127.77 1.47 2.38 16 28 C 0.06 1.17 11.38 83.54 0.95 2.12 16 29 H 0.05 1.54 5.96 -2.39 -0.01 1.52 16 30 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.06 1.40 8.02 -2.39 -0.02 1.38 16 32 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 33 H 0.11 3.03 8.14 -2.38 -0.02 3.01 16 34 H 0.28 15.24 8.31 -92.71 -0.77 14.47 16 35 H 0.15 5.77 8.06 -2.91 -0.02 5.74 16 36 H 0.18 4.39 8.06 -2.91 -0.02 4.36 16 37 H 0.24 5.04 8.06 -2.91 -0.02 5.01 16 38 H 0.19 3.63 8.06 -2.91 -0.02 3.60 16 39 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 Total: -1.00 -77.38 363.98 7.57 -69.81 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 1.01 Total: 23.81 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: 6.80 Total: -17.57 kcal Atomic # 7 Polarization: -68.92 SS G_CDS: -1.90 Total: -70.82 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -0.19 Total: -50.46 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 1.85 Total: 45.23 kcal Total: -77.38 7.57 -69.81 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650512390.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.423 kcal (2) G-P(sol) polarization free energy of solvation -77.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds