Wall clock time and date at job start Tue Mar 31 2020 12:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50707 * 109.46869 * 2 1 4 4 O 1.21298 * 119.99712 * 0.02562 * 3 2 1 5 5 C 1.46827 * 119.99906 * 180.02562 * 3 2 1 6 6 C 1.40064 * 120.10286 * 180.02562 * 5 3 2 7 7 C 1.36593 * 119.90034 * 179.70138 * 6 5 3 8 8 C 1.39226 * 120.10242 * 0.27395 * 7 6 5 9 9 N 1.39304 * 119.89908 * 179.97438 * 8 7 6 10 10 C 1.34777 * 120.00094 * 33.58806 * 9 8 7 11 11 O 1.21578 * 119.99626 * 5.32132 * 10 9 8 12 12 N 1.34774 * 119.99510 * 185.32251 * 10 9 8 13 13 C 1.47066 * 136.06383 * 359.62567 * 12 10 9 14 14 C 1.53231 * 88.08343 * 207.20579 * 13 12 10 15 15 O 1.42899 * 114.01889 * 87.71632 * 14 13 12 16 16 C 1.50710 * 114.32406 * 220.47129 * 14 13 12 17 17 H 1.07997 * 119.99770 * 93.76043 * 16 14 13 18 18 C 1.37876 * 119.99877 * 273.76115 * 16 14 13 19 19 N 1.31523 * 119.99808 * 359.97438 * 18 16 14 20 20 Si 1.86791 * 120.00140 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47400 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47409 * 119.99800 * 20 18 16 23 23 H 1.48497 * 109.47509 * 239.99755 * 20 18 16 24 24 C 1.47067 * 136.05389 * 179.97438 * 12 10 9 25 25 C 1.39223 * 120.20022 * 359.97438 * 8 7 6 26 26 C 1.36601 * 120.10444 * 359.97438 * 25 8 7 27 27 H 1.09002 * 109.47224 * 59.99664 * 1 2 3 28 28 H 1.08994 * 109.46762 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.46750 * 300.00048 * 1 2 3 30 30 H 1.09002 * 109.46964 * 240.00681 * 2 1 3 31 31 H 1.08993 * 109.47342 * 120.00260 * 2 1 3 32 32 H 1.08004 * 120.04709 * 359.96852 * 6 5 3 33 33 H 1.07997 * 119.95341 * 180.30143 * 7 6 5 34 34 H 0.97001 * 119.99611 * 213.58079 * 9 8 7 35 35 H 1.09003 * 113.46661 * 321.94349 * 13 12 10 36 36 H 1.09006 * 113.46265 * 92.37490 * 13 12 10 37 37 H 0.96697 * 113.99769 * 86.39047 * 15 14 13 38 38 H 0.97001 * 119.99885 * 180.02562 * 19 18 16 39 39 H 1.09005 * 113.46602 * 267.62505 * 24 12 10 40 40 H 1.09007 * 113.47003 * 38.06358 * 24 12 10 41 41 H 1.07998 * 119.94789 * 179.97438 * 25 8 7 42 42 H 1.07998 * 120.05483 * 180.02562 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 8 1.2440 2.3428 0.0005 5 6 3.4759 1.6892 -0.0006 6 6 3.9451 3.0089 0.0000 7 6 5.2889 3.2538 0.0056 8 6 6.1918 2.1941 0.0051 9 7 7.5614 2.4487 0.0103 10 6 8.0441 3.5257 0.6611 11 8 7.2981 4.2204 1.3235 12 7 9.3538 3.8323 0.5774 13 6 10.5346 3.2620 -0.0885 14 6 11.3944 3.8830 1.0175 15 8 11.5522 3.0505 2.1681 16 6 12.6876 4.4868 0.5332 17 1 12.7353 5.5383 0.2913 18 6 13.8096 3.6968 0.3990 19 7 13.7514 2.4165 0.6941 20 14 15.4125 4.4453 -0.2005 21 1 15.2153 5.8937 -0.4621 22 1 16.4604 4.2673 0.8366 23 1 15.8363 3.7698 -1.4532 24 6 10.2324 4.8812 1.1169 25 6 5.7301 0.8806 -0.0007 26 6 4.3880 0.6262 -0.0053 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3632 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8934 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.2454 3.8317 0.0003 33 1 5.6516 4.2710 0.0110 34 1 8.1676 1.8507 -0.4544 35 1 10.5494 2.1721 -0.0875 36 1 10.7236 3.6858 -1.0749 37 1 12.2851 2.4231 2.1021 38 1 14.5409 1.8608 0.6001 39 1 10.3401 5.7402 0.4546 40 1 9.9907 5.1655 2.1411 41 1 6.4341 0.0617 -0.0015 42 1 4.0307 -0.3930 -0.0094 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771821353.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:07:00 Heat of formation + Delta-G solvation = -67.212824 kcal Electronic energy + Delta-G solvation = -25586.188082 eV Core-core repulsion = 21725.094789 eV Total energy + Delta-G solvation = -3861.093292 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.99096 -41.01778 -40.08950 -38.78881 -35.94047 -35.86492 -34.12921 -33.87134 -32.11688 -31.57695 -29.91315 -27.32670 -26.88454 -25.93630 -24.33590 -23.22325 -22.23544 -20.79862 -20.44604 -19.60801 -19.06001 -18.44618 -17.83659 -17.12256 -16.93031 -16.62050 -16.42398 -16.36276 -15.89976 -15.55605 -15.13870 -14.97318 -14.66808 -14.49220 -14.45904 -14.25102 -13.84494 -13.74589 -13.59804 -13.42134 -13.07355 -12.81806 -12.76298 -12.64643 -12.24018 -12.22684 -12.16246 -11.97454 -11.73492 -11.42825 -11.13277 -10.70834 -10.64935 -10.29273 -10.10639 -9.74952 -9.13759 -8.28757 -6.44993 -0.41764 0.40832 1.25352 1.41812 1.46036 1.52426 1.61611 1.98066 2.39830 2.73373 2.82010 2.95820 3.08777 3.67259 3.76524 3.89318 4.08092 4.09904 4.25001 4.27674 4.33448 4.37859 4.46424 4.50709 4.59792 4.65065 4.79993 4.84709 4.87331 4.97506 5.04955 5.10704 5.14003 5.20294 5.25934 5.32256 5.37317 5.45063 5.72835 5.88675 5.89289 6.08438 6.60206 6.61546 6.88739 7.27427 7.33989 7.48572 8.77715 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.039950 B = 0.002237 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.712312 B =12515.191390 C =12841.966510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.164 4.164 3 C 0.398 3.602 4 O -0.503 6.503 5 C -0.211 4.211 6 C -0.051 4.051 7 C -0.160 4.160 8 C 0.194 3.806 9 N -0.672 5.672 10 C 0.724 3.276 11 O -0.620 6.620 12 N -0.653 5.653 13 C 0.087 3.913 14 C 0.219 3.781 15 O -0.586 6.586 16 C -0.549 4.549 17 H 0.075 0.925 18 C 0.033 3.967 19 N -0.916 5.916 20 Si 0.970 3.030 21 H -0.267 1.267 22 H -0.283 1.283 23 H -0.277 1.277 24 C 0.128 3.872 25 C -0.160 4.160 26 C -0.027 4.027 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.043 0.957 30 H 0.129 0.871 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.112 0.888 34 H 0.421 0.579 35 H 0.067 0.933 36 H 0.096 0.904 37 H 0.390 0.610 38 H 0.277 0.723 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.163 0.837 42 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.031 -10.270 -5.932 19.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.201 4.201 3 C 0.279 3.721 4 O -0.382 6.382 5 C -0.213 4.213 6 C -0.070 4.070 7 C -0.181 4.181 8 C 0.097 3.903 9 N -0.319 5.319 10 C 0.428 3.572 11 O -0.501 6.501 12 N -0.389 5.389 13 C -0.036 4.036 14 C 0.178 3.822 15 O -0.399 6.399 16 C -0.587 4.587 17 H 0.093 0.907 18 C -0.168 4.168 19 N -0.557 5.557 20 Si 0.795 3.205 21 H -0.192 1.192 22 H -0.209 1.209 23 H -0.202 1.202 24 C 0.005 3.995 25 C -0.180 4.180 26 C -0.046 4.046 27 H 0.064 0.936 28 H 0.104 0.896 29 H 0.062 0.938 30 H 0.147 0.853 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.130 0.870 34 H 0.259 0.741 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.246 0.754 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.072 0.928 41 H 0.180 0.820 42 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -16.497 -9.137 -5.235 19.571 hybrid contribution 1.840 0.311 -0.465 1.923 sum -14.656 -8.827 -5.700 18.034 Atomic orbital electron populations 1.21618 0.94273 1.02798 1.01644 1.22082 0.97783 0.93084 1.07145 1.22992 0.87139 0.92666 0.69256 1.90513 1.59162 1.49530 1.38982 1.20684 0.95943 0.93988 1.10701 1.21014 0.94387 0.97370 0.94231 1.20813 0.93296 0.99154 1.04824 1.18163 0.81731 0.94789 0.95625 1.42391 1.06722 1.27716 1.55056 1.15410 0.80415 0.81376 0.80032 1.90869 1.57149 1.54542 1.47571 1.48786 1.04392 1.32542 1.53148 1.23995 0.80899 0.99312 0.99355 1.19761 0.91353 0.87776 0.83323 1.86044 1.57798 1.54682 1.41408 1.21662 0.94858 0.96896 1.45320 0.90662 1.25742 1.02129 0.95023 0.93870 1.69319 1.31607 1.05886 1.48892 0.85318 0.78524 0.78854 0.77797 1.19157 1.20934 1.20206 1.23289 0.85294 0.92353 0.98552 1.20994 0.97636 0.93967 1.05418 1.21383 0.90892 1.00083 0.92202 0.93550 0.89615 0.93795 0.85296 0.85689 0.85876 0.86976 0.74067 0.91477 0.88645 0.75412 0.91319 0.87700 0.92787 0.81976 0.79898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 9.20 71.98 0.66 -1.14 16 2 C -0.16 -1.69 5.02 29.85 0.15 -1.54 16 3 C 0.40 8.07 7.11 27.94 0.20 8.27 16 4 O -0.50 -14.30 15.96 -3.09 -0.05 -14.35 16 5 C -0.21 -4.57 5.87 -20.14 -0.12 -4.69 16 6 C -0.05 -1.43 9.54 22.33 0.21 -1.21 16 7 C -0.16 -5.05 8.58 22.12 0.19 -4.86 16 8 C 0.19 5.44 6.27 38.43 0.24 5.68 16 9 N -0.67 -20.57 5.32 -317.14 -1.69 -22.26 16 10 C 0.72 28.89 8.52 179.06 1.53 30.42 16 11 O -0.62 -28.85 14.79 -3.96 -0.06 -28.90 16 12 N -0.65 -26.26 3.69 -877.55 -3.24 -29.50 16 13 C 0.09 3.40 7.69 83.08 0.64 4.04 16 14 C 0.22 10.02 1.57 -11.29 -0.02 10.00 16 15 O -0.59 -29.50 13.53 -148.98 -2.02 -31.52 16 16 C -0.55 -26.02 8.69 25.60 0.22 -25.80 16 17 H 0.08 3.46 7.81 -2.91 -0.02 3.44 16 18 C 0.03 1.54 5.40 84.65 0.46 2.00 16 19 N -0.92 -43.96 11.01 21.45 0.24 -43.73 16 20 Si 0.97 37.70 29.54 68.60 2.03 39.73 16 21 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 22 H -0.28 -11.11 7.11 99.48 0.71 -10.40 16 23 H -0.28 -10.50 7.11 99.48 0.71 -9.79 16 24 C 0.13 5.40 8.04 83.18 0.67 6.07 16 25 C -0.16 -3.06 9.90 22.12 0.22 -2.84 16 26 C -0.03 -0.42 9.42 22.33 0.21 -0.21 16 27 H 0.05 0.69 8.10 -2.39 -0.02 0.67 16 28 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.04 0.68 8.10 -2.38 -0.02 0.66 16 30 H 0.13 0.61 8.08 -2.39 -0.02 0.59 16 31 H 0.13 0.71 8.09 -2.39 -0.02 0.69 16 32 H 0.12 3.53 7.64 -2.91 -0.02 3.51 16 33 H 0.11 4.15 6.41 -2.91 -0.02 4.13 16 34 H 0.42 10.56 8.54 -92.71 -0.79 9.77 16 35 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.10 3.47 8.10 -2.38 -0.02 3.45 16 37 H 0.39 19.82 6.33 -74.06 -0.47 19.35 16 38 H 0.28 12.55 8.31 -92.71 -0.77 11.78 16 39 H 0.11 3.97 8.10 -2.38 -0.02 3.95 16 40 H 0.05 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.16 2.15 8.06 -2.91 -0.02 2.12 16 42 H 0.18 1.00 7.03 -2.91 -0.02 0.98 16 Total: -1.00 -65.94 359.10 0.48 -65.46 By element: Atomic # 1 Polarization: 41.08 SS G_CDS: -0.19 Total: 40.89 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 5.46 Total: 24.19 kcal Atomic # 7 Polarization: -90.79 SS G_CDS: -4.69 Total: -95.48 kcal Atomic # 8 Polarization: -72.65 SS G_CDS: -2.12 Total: -74.77 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.73 kcal Total: -65.94 0.48 -65.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771821353.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.756 kcal (2) G-P(sol) polarization free energy of solvation -65.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds