Wall clock time and date at job start Tue Mar 31 2020 14:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47038 * 120.00315 * 2 1 3 5 5 C 1.50707 * 109.46935 * 294.99817 * 4 2 1 6 6 C 1.38265 * 119.98347 * 89.99975 * 5 4 2 7 7 C 1.38229 * 120.04743 * 180.02562 * 6 5 4 8 8 C 1.38217 * 120.02586 * 0.02663 * 7 6 5 9 9 C 1.38446 * 119.97609 * 359.97438 * 8 7 6 10 10 F 1.35091 * 120.02454 * 179.73046 * 9 8 7 11 11 C 1.38175 * 119.98725 * 270.02376 * 5 4 2 12 12 C 1.50703 * 109.47075 * 239.99872 * 2 1 3 13 13 O 1.21286 * 120.00153 * 245.47077 * 12 2 1 14 14 N 1.34772 * 120.00030 * 65.47480 * 12 2 1 15 15 C 1.46507 * 119.99933 * 4.88750 * 14 12 2 16 16 C 1.50698 * 109.46668 * 96.35803 * 15 14 12 17 17 H 1.07990 * 120.00616 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99560 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99837 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47215 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47374 * 119.99820 * 20 18 16 23 23 H 1.48498 * 109.46970 * 239.99970 * 20 18 16 24 24 C 1.46504 * 120.00217 * 184.89264 * 14 12 2 25 25 C 1.52989 * 109.47388 * 84.70766 * 24 14 12 26 26 C 1.47205 * 109.47473 * 179.97438 * 25 24 14 27 27 N 6.96605 * 92.14541 * 242.19257 * 2 1 3 28 28 H 1.09003 * 109.47533 * 190.36626 * 1 2 3 29 29 H 1.08996 * 109.47280 * 310.37418 * 1 2 3 30 30 H 1.09000 * 109.47089 * 70.37345 * 1 2 3 31 31 H 1.09005 * 109.47072 * 175.00290 * 4 2 1 32 32 H 1.08996 * 109.47380 * 54.99707 * 4 2 1 33 33 H 1.07994 * 119.97602 * 0.04550 * 6 5 4 34 34 H 1.07996 * 119.98843 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.01266 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.01289 * 359.97438 * 11 5 4 37 37 H 1.09004 * 109.46972 * 216.35368 * 15 14 12 38 38 H 1.08995 * 109.46735 * 336.35465 * 15 14 12 39 39 H 0.97003 * 119.99712 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47039 * 204.71423 * 24 14 12 41 41 H 1.09001 * 109.46939 * 324.70626 * 24 14 12 42 42 H 1.08998 * 109.47567 * 300.00333 * 25 24 14 43 43 H 1.09009 * 109.47170 * 60.00302 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 6 0.4351 -0.2053 3.0996 7 6 0.0678 0.5081 4.2251 8 6 0.9059 1.4851 4.7287 9 6 2.1139 1.7486 4.1057 10 9 2.9313 2.7070 4.5939 11 6 2.4810 1.0328 2.9786 12 6 2.0323 -0.7105 -1.2305 13 8 2.6455 -1.7512 -1.1220 14 7 1.8001 -0.1893 -2.4515 15 6 1.1544 1.1196 -2.5786 16 6 2.2068 2.1842 -2.7519 17 1 3.2521 1.9131 -2.7655 18 6 1.8352 3.5046 -2.8919 19 7 0.5623 3.8348 -2.8748 20 14 3.1397 4.8243 -3.1060 21 1 4.4857 4.1971 -3.0906 22 1 2.9322 5.5200 -4.4015 23 1 3.0385 5.8051 -1.9957 24 6 2.1934 -0.9317 -3.6517 25 6 1.0906 -1.9258 -4.0207 26 6 1.4855 -2.6713 -5.2270 27 7 1.7907 -3.2474 -6.1573 28 1 -0.3634 -1.0109 0.1849 29 1 -0.3633 0.6657 0.7829 30 1 -0.3633 0.3452 -0.9680 31 1 3.1263 -0.7995 1.2056 32 1 1.6053 -1.7198 1.2951 33 1 -0.2204 -0.9684 2.7067 34 1 -0.8747 0.3027 4.7107 35 1 0.6190 2.0421 5.6084 36 1 3.4230 1.2375 2.4917 37 1 0.4944 1.1165 -3.4461 38 1 0.5727 1.3264 -1.6803 39 1 0.3009 4.7637 -2.9737 40 1 2.3455 -0.2351 -4.4762 41 1 3.1197 -1.4722 -3.4573 42 1 0.9385 -2.6224 -3.1962 43 1 0.1642 -1.3852 -4.2152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000067215870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:26 Heat of formation + Delta-G solvation = -42.877703 kcal Electronic energy + Delta-G solvation = -26270.663063 eV Core-core repulsion = 22422.997810 eV Total energy + Delta-G solvation = -3847.665253 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -48.84919 -39.92074 -38.93288 -36.72257 -35.29905 -34.73717 -32.87897 -31.59931 -30.71211 -30.08345 -27.27690 -26.69549 -24.69237 -23.37589 -22.80082 -22.21993 -20.77699 -18.24381 -17.55315 -17.29304 -16.68525 -16.37894 -16.27935 -16.08748 -15.62043 -15.44784 -14.85565 -14.64141 -14.47499 -14.05832 -13.79499 -13.69239 -13.27172 -13.12779 -12.69627 -12.62313 -12.34545 -12.32219 -12.20734 -12.10244 -11.79056 -11.68398 -11.60180 -11.33331 -11.08941 -10.97881 -10.89849 -10.71858 -10.62617 -10.57331 -10.18818 -9.74978 -9.17307 -8.89013 -8.62035 -8.59848 -7.92426 -6.26353 -4.32950 1.16319 1.21360 2.82946 2.93411 3.18045 3.23336 3.27970 3.32786 3.52318 3.71644 4.24063 4.27509 4.35768 4.69246 4.78258 5.00184 5.08024 5.15374 5.18953 5.24530 5.27851 5.33699 5.41458 5.42372 5.64937 5.75814 5.82679 5.90389 6.01408 6.07020 6.11592 6.12632 6.20736 6.25390 6.29196 6.43231 6.47444 6.60407 6.66026 6.90908 7.09590 7.37679 7.68101 7.69433 7.96305 8.17824 8.68699 8.85641 9.35415 10.80401 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.004431 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.574406 B = 6317.916978 C = 8501.431591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.101 4.101 3 H 0.109 0.891 4 C -0.062 4.062 5 C -0.041 4.041 6 C -0.125 4.125 7 C -0.092 4.092 8 C -0.164 4.164 9 C 0.098 3.902 10 F -0.143 7.143 11 C -0.149 4.149 12 C 0.523 3.477 13 O -0.570 6.570 14 N -0.593 5.593 15 C 0.222 3.778 16 C -0.541 4.541 17 H 0.062 0.938 18 C 0.067 3.933 19 N -0.889 5.889 20 Si 0.893 3.107 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.282 1.282 24 C 0.126 3.874 25 C -0.045 4.045 26 C 0.221 3.779 27 N -0.451 5.451 28 H 0.052 0.948 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.035 0.965 38 H 0.061 0.939 39 H 0.265 0.735 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.108 0.892 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.612 -5.738 11.816 13.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.122 4.122 3 H 0.127 0.873 4 C -0.100 4.100 5 C -0.041 4.041 6 C -0.143 4.143 7 C -0.110 4.110 8 C -0.183 4.183 9 C 0.079 3.921 10 F -0.121 7.121 11 C -0.167 4.167 12 C 0.312 3.688 13 O -0.451 6.451 14 N -0.323 5.323 15 C 0.103 3.897 16 C -0.579 4.579 17 H 0.080 0.920 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.721 3.279 21 H -0.197 1.197 22 H -0.208 1.208 23 H -0.208 1.208 24 C 0.000 4.000 25 C -0.086 4.086 26 C -0.097 4.097 27 N -0.128 5.128 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.148 0.852 36 H 0.154 0.846 37 H 0.053 0.947 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.126 0.874 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -2.941 -6.915 10.464 12.883 hybrid contribution 0.642 1.564 0.256 1.710 sum -2.299 -5.351 10.721 12.200 Atomic orbital electron populations 1.22030 0.93027 1.01629 1.04063 1.21167 0.97720 1.01807 0.91552 0.87299 1.20476 1.02214 0.97848 0.89461 1.19804 0.93504 0.94924 0.95897 1.21159 0.96425 1.00790 0.95935 1.20966 0.99083 0.94937 0.95998 1.21085 0.94011 1.01090 1.02072 1.17712 0.89815 0.89396 0.95149 1.91489 1.71846 1.61480 1.87322 1.21120 1.02005 0.97479 0.96124 1.20476 0.78816 0.84563 0.84974 1.90610 1.42374 1.25070 1.87068 1.48174 1.59364 1.20943 1.03799 1.19843 0.93452 0.76937 0.99490 1.21511 0.93620 0.91494 1.51295 0.92013 1.24904 0.95446 0.98562 0.94712 1.69907 1.14971 1.18563 1.49277 0.86511 0.81886 0.81635 0.77916 1.19653 1.20836 1.20779 1.21088 0.95739 0.93825 0.89303 1.19779 1.01808 0.97607 0.89445 1.29118 0.93047 0.93248 0.94263 1.81176 1.09165 1.10497 1.11965 0.92852 0.91730 0.90143 0.90144 0.90078 0.85279 0.85239 0.85180 0.84630 0.94659 0.92192 0.92513 0.89154 0.90302 0.87378 0.87102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 7.90 37.15 0.29 -1.71 16 2 C -0.10 -1.54 1.88 -91.77 -0.17 -1.71 16 3 H 0.11 1.88 7.73 -51.93 -0.40 1.48 16 4 C -0.06 -0.82 4.14 -27.88 -0.12 -0.94 16 5 C -0.04 -0.51 4.73 -104.63 -0.50 -1.00 16 6 C -0.12 -1.32 8.25 -39.57 -0.33 -1.65 16 7 C -0.09 -0.90 10.04 -39.59 -0.40 -1.30 16 8 C -0.16 -1.79 10.03 -39.51 -0.40 -2.19 16 9 C 0.10 1.28 7.30 -39.42 -0.29 0.99 16 10 F -0.14 -1.98 17.27 2.25 0.04 -1.94 16 11 C -0.15 -1.94 9.68 -39.52 -0.38 -2.33 16 12 C 0.52 9.05 6.94 -10.99 -0.08 8.97 16 13 O -0.57 -10.80 15.62 5.55 0.09 -10.71 16 14 N -0.59 -10.38 2.47 -175.06 -0.43 -10.81 16 15 C 0.22 4.52 4.42 -5.19 -0.02 4.49 16 16 C -0.54 -12.89 9.37 -34.44 -0.32 -13.22 16 17 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 18 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -22.92 13.29 55.43 0.74 -22.18 16 20 Si 0.89 19.80 29.54 -169.99 -5.02 14.78 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 C 0.13 1.94 5.37 -4.05 -0.02 1.92 16 25 C -0.04 -0.56 5.99 -29.52 -0.18 -0.73 16 26 C 0.22 3.12 15.43 -20.76 -0.32 2.80 16 27 N -0.45 -7.42 18.54 42.15 0.78 -6.64 16 28 H 0.05 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.06 0.83 6.98 -51.93 -0.36 0.46 16 30 H 0.08 1.19 5.42 -51.93 -0.28 0.90 16 31 H 0.08 1.12 7.98 -51.93 -0.41 0.71 16 32 H 0.08 1.01 8.05 -51.93 -0.42 0.59 16 33 H 0.13 1.14 8.04 -52.49 -0.42 0.72 16 34 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 35 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.14 1.73 8.06 -52.49 -0.42 1.30 16 37 H 0.04 0.75 8.12 -51.93 -0.42 0.33 16 38 H 0.06 1.23 4.12 -51.93 -0.21 1.01 16 39 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 40 H 0.09 1.43 8.03 -51.93 -0.42 1.01 16 41 H 0.08 1.26 7.52 -51.93 -0.39 0.87 16 42 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.11 1.22 8.14 -51.92 -0.42 0.80 16 LS Contribution 371.62 15.07 5.60 5.60 Total: -1.00 -28.17 371.62 -7.35 -35.51 By element: Atomic # 1 Polarization: 8.24 SS G_CDS: -5.82 Total: 2.42 kcal Atomic # 6 Polarization: -2.71 SS G_CDS: -3.32 Total: -6.03 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: 1.09 Total: -39.63 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.09 Total: -10.71 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -28.17 -7.35 -35.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067215870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.364 kcal (2) G-P(sol) polarization free energy of solvation -28.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds