Wall clock time and date at job start Tue Mar 31 2020 14:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09000 * 109.47043 * 2 1 4 4 C 1.52998 * 109.47038 * 120.00315 * 2 1 3 5 5 C 1.50707 * 109.46935 * 294.99817 * 4 2 1 6 6 C 1.38265 * 119.98347 * 89.99975 * 5 4 2 7 7 C 1.38229 * 120.04743 * 180.02562 * 6 5 4 8 8 C 1.38217 * 120.02586 * 0.02663 * 7 6 5 9 9 C 1.38446 * 119.97609 * 359.97438 * 8 7 6 10 10 F 1.35091 * 120.02454 * 179.73046 * 9 8 7 11 11 C 1.38175 * 119.98725 * 270.02376 * 5 4 2 12 12 C 1.50703 * 109.47075 * 239.99872 * 2 1 3 13 13 O 1.21286 * 120.00153 * 245.47077 * 12 2 1 14 14 N 1.34772 * 120.00030 * 65.47480 * 12 2 1 15 15 C 1.46507 * 119.99933 * 4.88750 * 14 12 2 16 16 C 1.50698 * 109.46668 * 96.35803 * 15 14 12 17 17 H 1.07990 * 120.00616 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99560 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99837 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99989 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47215 * 359.97438 * 20 18 16 22 22 H 1.48503 * 109.47374 * 119.99820 * 20 18 16 23 23 H 1.48498 * 109.46970 * 239.99970 * 20 18 16 24 24 C 1.46504 * 120.00217 * 184.89264 * 14 12 2 25 25 C 1.52989 * 109.47388 * 84.70766 * 24 14 12 26 26 C 1.47205 * 109.47473 * 179.97438 * 25 24 14 27 27 N 6.96605 * 92.14541 * 242.19257 * 2 1 3 28 28 H 1.09003 * 109.47533 * 190.36626 * 1 2 3 29 29 H 1.08996 * 109.47280 * 310.37418 * 1 2 3 30 30 H 1.09000 * 109.47089 * 70.37345 * 1 2 3 31 31 H 1.09005 * 109.47072 * 175.00290 * 4 2 1 32 32 H 1.08996 * 109.47380 * 54.99707 * 4 2 1 33 33 H 1.07994 * 119.97602 * 0.04550 * 6 5 4 34 34 H 1.07996 * 119.98843 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.01266 * 180.02562 * 8 7 6 36 36 H 1.08001 * 120.01289 * 359.97438 * 11 5 4 37 37 H 1.09004 * 109.46972 * 216.35368 * 15 14 12 38 38 H 1.08995 * 109.46735 * 336.35465 * 15 14 12 39 39 H 0.97003 * 119.99712 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47039 * 204.71423 * 24 14 12 41 41 H 1.09001 * 109.46939 * 324.70626 * 24 14 12 42 42 H 1.08998 * 109.47567 * 300.00333 * 25 24 14 43 43 H 1.09009 * 109.47170 * 60.00302 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6412 0.0570 2.4766 6 6 0.4351 -0.2053 3.0996 7 6 0.0678 0.5081 4.2251 8 6 0.9059 1.4851 4.7287 9 6 2.1139 1.7486 4.1057 10 9 2.9313 2.7070 4.5939 11 6 2.4810 1.0328 2.9786 12 6 2.0323 -0.7105 -1.2305 13 8 2.6455 -1.7512 -1.1220 14 7 1.8001 -0.1893 -2.4515 15 6 1.1544 1.1196 -2.5786 16 6 2.2068 2.1842 -2.7519 17 1 3.2521 1.9131 -2.7655 18 6 1.8352 3.5046 -2.8919 19 7 0.5623 3.8348 -2.8748 20 14 3.1397 4.8243 -3.1060 21 1 4.4857 4.1971 -3.0906 22 1 2.9322 5.5200 -4.4015 23 1 3.0385 5.8051 -1.9957 24 6 2.1934 -0.9317 -3.6517 25 6 1.0906 -1.9258 -4.0207 26 6 1.4855 -2.6713 -5.2270 27 7 1.7907 -3.2474 -6.1573 28 1 -0.3634 -1.0109 0.1849 29 1 -0.3633 0.6657 0.7829 30 1 -0.3633 0.3452 -0.9680 31 1 3.1263 -0.7995 1.2056 32 1 1.6053 -1.7198 1.2951 33 1 -0.2204 -0.9684 2.7067 34 1 -0.8747 0.3027 4.7107 35 1 0.6190 2.0421 5.6084 36 1 3.4230 1.2375 2.4917 37 1 0.4944 1.1165 -3.4461 38 1 0.5727 1.3264 -1.6803 39 1 0.3009 4.7637 -2.9737 40 1 2.3455 -0.2351 -4.4762 41 1 3.1197 -1.4722 -3.4573 42 1 0.9385 -2.6224 -3.1962 43 1 0.1642 -1.3852 -4.2152 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067215870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:00:25 Heat of formation + Delta-G solvation = -55.044113 kcal Electronic energy + Delta-G solvation = -26271.190638 eV Core-core repulsion = 22422.997810 eV Total energy + Delta-G solvation = -3848.192828 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.85869 -41.19721 -39.94373 -37.94368 -36.75553 -35.88162 -34.63300 -32.79246 -31.71345 -31.08090 -28.98250 -27.72864 -25.90497 -25.01103 -23.82660 -23.27384 -21.84309 -19.62023 -18.84518 -18.37091 -18.33405 -17.59970 -17.24319 -17.01717 -17.00458 -16.55116 -16.26869 -16.07484 -15.75890 -15.19941 -14.95787 -14.78316 -14.41441 -14.25787 -14.12164 -13.72455 -13.66090 -13.59072 -13.49859 -13.27466 -12.98213 -12.96317 -12.81733 -12.70961 -12.53117 -12.46008 -12.12209 -11.93671 -11.88178 -11.79929 -11.70076 -11.44586 -10.64688 -10.38688 -9.82080 -9.52744 -9.44525 -8.16437 -6.26755 0.26718 0.33261 1.39284 1.45303 1.52304 1.63085 1.79186 1.87259 2.30610 2.45459 2.72055 3.15089 3.19027 3.33245 3.66228 3.89012 3.97616 4.09514 4.14022 4.18067 4.23849 4.30854 4.39075 4.49874 4.56777 4.63410 4.83808 4.90085 4.92921 4.97690 5.03455 5.08093 5.12188 5.22121 5.24034 5.29916 5.34571 5.46131 5.51065 5.67816 5.73695 5.90010 6.04011 6.15257 6.55559 6.64037 6.88563 7.36453 7.47719 8.88409 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.009258 B = 0.004431 C = 0.003293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3023.574406 B = 6317.916978 C = 8501.431591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.082 0.918 4 C -0.052 4.052 5 C -0.051 4.051 6 C -0.121 4.121 7 C -0.084 4.084 8 C -0.162 4.162 9 C 0.073 3.927 10 F -0.155 7.155 11 C -0.168 4.168 12 C 0.521 3.479 13 O -0.586 6.586 14 N -0.593 5.593 15 C 0.235 3.765 16 C -0.545 4.545 17 H 0.047 0.953 18 C 0.029 3.971 19 N -0.912 5.912 20 Si 0.939 3.061 21 H -0.276 1.276 22 H -0.280 1.280 23 H -0.282 1.282 24 C 0.122 3.878 25 C -0.029 4.029 26 C 0.245 3.755 27 N -0.491 5.491 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.166 0.834 35 H 0.151 0.849 36 H 0.124 0.876 37 H 0.030 0.970 38 H 0.064 0.936 39 H 0.266 0.734 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.123 0.877 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.380 -6.516 13.008 15.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.119 4.119 3 H 0.100 0.900 4 C -0.090 4.090 5 C -0.052 4.052 6 C -0.138 4.138 7 C -0.102 4.102 8 C -0.181 4.181 9 C 0.054 3.946 10 F -0.134 7.134 11 C -0.187 4.187 12 C 0.311 3.689 13 O -0.467 6.467 14 N -0.323 5.323 15 C 0.115 3.885 16 C -0.584 4.584 17 H 0.065 0.935 18 C -0.172 4.172 19 N -0.551 5.551 20 Si 0.766 3.234 21 H -0.200 1.200 22 H -0.206 1.206 23 H -0.208 1.208 24 C -0.003 4.003 25 C -0.070 4.070 26 C -0.073 4.073 27 N -0.169 5.169 28 H 0.097 0.903 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.112 0.888 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.168 0.832 36 H 0.142 0.858 37 H 0.048 0.952 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.101 0.899 41 H 0.089 0.911 42 H 0.141 0.859 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -4.699 -7.701 11.650 14.734 hybrid contribution 1.225 1.791 -0.080 2.172 sum -3.474 -5.909 11.570 13.448 Atomic orbital electron populations 1.21970 0.91208 1.03340 1.03478 1.21139 0.99180 1.00100 0.91465 0.90001 1.20355 1.01253 0.98346 0.89056 1.19752 0.94469 0.95012 0.95921 1.21476 0.95641 1.00949 0.95777 1.21389 0.99929 0.93551 0.95333 1.21420 0.93032 1.01246 1.02362 1.17999 0.90890 0.89892 0.95854 1.91450 1.72409 1.62027 1.87493 1.21172 1.02200 0.98518 0.96814 1.20837 0.78312 0.84396 0.85344 1.90601 1.42994 1.25890 1.87263 1.48090 1.59300 1.20213 1.04683 1.19551 0.92412 0.77285 0.99259 1.21764 0.93747 0.92577 1.50322 0.93465 1.25426 0.96700 1.00103 0.94989 1.69959 1.15891 1.18833 1.50457 0.85796 0.80030 0.79840 0.77744 1.20034 1.20586 1.20785 1.21137 0.96654 0.94105 0.88397 1.19706 1.01216 0.97022 0.89040 1.29277 0.91850 0.92295 0.93836 1.81204 1.10418 1.11969 1.13340 0.90264 0.91022 0.91576 0.91766 0.88778 0.82808 0.81631 0.83164 0.85813 0.95187 0.91861 0.92495 0.89854 0.91083 0.85911 0.84975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.51 7.90 71.98 0.57 -2.94 16 2 C -0.10 -2.90 1.88 -11.54 -0.02 -2.92 16 3 H 0.08 2.89 7.73 -2.39 -0.02 2.87 16 4 C -0.05 -1.34 4.14 29.85 0.12 -1.22 16 5 C -0.05 -1.21 4.73 -19.87 -0.09 -1.30 16 6 C -0.12 -2.18 8.25 22.27 0.18 -2.00 16 7 C -0.08 -1.35 10.04 22.26 0.22 -1.12 16 8 C -0.16 -3.19 10.03 22.31 0.22 -2.96 16 9 C 0.07 1.87 7.30 22.38 0.16 2.03 16 10 F -0.15 -4.38 17.27 44.97 0.78 -3.61 16 11 C -0.17 -4.48 9.68 22.31 0.22 -4.26 16 12 C 0.52 17.69 6.94 87.66 0.61 18.30 16 13 O -0.59 -21.67 15.62 -3.05 -0.05 -21.72 16 14 N -0.59 -20.43 2.47 -826.15 -2.04 -22.47 16 15 C 0.24 9.51 4.42 85.63 0.38 9.88 16 16 C -0.55 -26.17 9.37 25.60 0.24 -25.93 16 17 H 0.05 2.36 7.81 -2.92 -0.02 2.34 16 18 C 0.03 1.42 5.46 84.66 0.46 1.89 16 19 N -0.91 -46.87 13.29 21.45 0.28 -46.58 16 20 Si 0.94 40.75 29.54 68.60 2.03 42.78 16 21 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 C 0.12 3.67 5.37 86.37 0.46 4.14 16 25 C -0.03 -0.66 5.99 28.79 0.17 -0.48 16 26 C 0.24 6.56 15.43 89.44 1.38 7.94 16 27 N -0.49 -15.81 18.54 20.01 0.37 -15.44 16 28 H 0.08 1.53 8.09 -2.39 -0.02 1.52 16 29 H 0.07 1.66 6.98 -2.39 -0.02 1.65 16 30 H 0.07 1.83 5.42 -2.39 -0.01 1.82 16 31 H 0.06 1.82 7.98 -2.38 -0.02 1.81 16 32 H 0.09 2.15 8.05 -2.39 -0.02 2.13 16 33 H 0.15 2.01 8.04 -2.91 -0.02 1.99 16 34 H 0.17 1.47 8.06 -2.91 -0.02 1.45 16 35 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 36 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 37 H 0.03 1.26 8.12 -2.38 -0.02 1.24 16 38 H 0.06 2.56 4.12 -2.39 -0.01 2.55 16 39 H 0.27 13.13 8.31 -92.71 -0.77 12.36 16 40 H 0.08 2.61 8.03 -2.39 -0.02 2.59 16 41 H 0.07 2.25 7.52 -2.39 -0.02 2.23 16 42 H 0.12 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.13 2.55 8.14 -2.38 -0.02 2.53 16 Total: -1.00 -60.48 371.62 7.69 -52.79 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: 1.02 Total: 15.21 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 5.29 Total: -0.96 kcal Atomic # 7 Polarization: -83.10 SS G_CDS: -1.38 Total: -84.49 kcal Atomic # 8 Polarization: -21.67 SS G_CDS: -0.05 Total: -21.72 kcal Atomic # 9 Polarization: -4.38 SS G_CDS: 0.78 Total: -3.61 kcal Atomic # 14 Polarization: 40.75 SS G_CDS: 2.03 Total: 42.78 kcal Total: -60.48 7.69 -52.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067215870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.253 kcal (2) G-P(sol) polarization free energy of solvation -60.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds