Wall clock time and date at job start Tue Mar 31 2020 14:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.46817 * 2 1 4 4 C 1.50696 * 109.47151 * 120.00171 * 2 1 3 5 5 O 1.21287 * 120.00089 * 120.00505 * 4 2 1 6 6 N 1.34781 * 119.99890 * 300.00258 * 4 2 1 7 7 C 1.40087 * 119.99524 * 175.38111 * 6 4 2 8 8 C 1.39029 * 119.92566 * 214.82411 * 7 6 4 9 9 C 1.38038 * 120.20648 * 179.80320 * 8 7 6 10 10 C 1.38679 * 119.93937 * 0.43560 * 9 8 7 11 11 N 1.39456 * 133.24923 * 179.79129 * 10 9 8 12 12 H 0.97003 * 125.83070 * 0.05072 * 11 10 9 13 13 C 1.34634 * 108.33944 * 180.02562 * 11 10 9 14 14 O 1.21692 * 125.15269 * 179.97438 * 13 11 10 15 15 N 1.34621 * 109.69030 * 0.02562 * 13 11 10 16 16 H 0.96996 * 125.79890 * 180.02562 * 15 13 11 17 17 C 1.39296 * 108.39593 * 359.97438 * 15 13 11 18 18 C 1.38612 * 133.25559 * 180.02562 * 17 15 13 19 19 N 1.46902 * 109.47119 * 240.00789 * 2 1 3 20 20 C 1.46906 * 110.99574 * 306.03950 * 19 2 1 21 21 C 1.46898 * 111.00392 * 69.99594 * 19 2 1 22 22 C 1.50696 * 109.47163 * 169.99911 * 21 19 2 23 23 H 1.08003 * 119.99644 * 0.02562 * 22 21 19 24 24 C 1.37873 * 120.00149 * 179.97438 * 22 21 19 25 25 N 1.31521 * 120.00172 * 180.02562 * 24 22 21 26 26 Si 1.86791 * 120.00137 * 0.02562 * 24 22 21 27 27 H 1.48502 * 109.47155 * 89.99927 * 26 24 22 28 28 H 1.48501 * 109.47687 * 209.99917 * 26 24 22 29 29 H 1.48508 * 109.47137 * 330.00027 * 26 24 22 30 30 H 1.08995 * 109.47642 * 299.99555 * 1 2 3 31 31 H 1.09004 * 109.47676 * 59.99680 * 1 2 3 32 32 H 1.08998 * 109.47269 * 179.97438 * 1 2 3 33 33 H 0.96995 * 119.99722 * 355.37452 * 6 4 2 34 34 H 1.07998 * 119.89789 * 0.02610 * 8 7 6 35 35 H 1.08001 * 120.03042 * 180.25948 * 9 8 7 36 36 H 1.07994 * 120.10502 * 359.95275 * 18 17 15 37 37 H 1.09006 * 109.46789 * 183.95867 * 20 19 2 38 38 H 1.08995 * 109.47121 * 303.95499 * 20 19 2 39 39 H 1.08995 * 109.46784 * 63.95767 * 20 19 2 40 40 H 1.09003 * 109.47194 * 49.99940 * 21 19 2 41 41 H 1.08996 * 109.47034 * 289.99842 * 21 19 2 42 42 H 0.97000 * 120.00166 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7066 -0.2500 2.4546 7 6 2.0918 -0.9640 3.5966 8 6 1.2605 -0.9912 4.7107 9 6 1.6325 -1.6962 5.8377 10 6 2.8430 -2.3723 5.8629 11 7 3.4839 -3.1486 6.8280 12 1 3.1421 -3.3507 7.7131 13 6 4.6579 -3.5702 6.3214 14 8 5.4632 -4.2694 6.9075 15 7 4.8064 -3.1000 5.0688 16 1 5.5664 -3.2621 4.4883 17 6 3.6826 -2.3421 4.7476 18 6 3.3043 -1.6368 3.6159 19 7 2.0196 -0.6923 -1.1995 20 6 1.4343 -2.0354 -1.3079 21 6 1.7529 0.0974 -2.4091 22 6 2.4774 -0.5159 -3.5795 23 1 3.0758 -1.4040 -3.4389 24 6 2.3754 0.0558 -4.8299 25 7 3.0073 -0.4798 -5.8515 26 14 1.3398 1.5912 -5.0732 27 1 2.1833 2.7955 -4.8642 28 1 0.7910 1.6048 -6.4530 29 1 0.2218 1.5943 -4.0957 30 1 -0.3634 0.5137 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.2057 0.5757 2.5447 34 1 0.3192 -0.4621 4.6931 35 1 0.9826 -1.7189 6.7000 36 1 3.9518 -1.6112 2.7520 37 1 1.8665 -2.5520 -2.1650 38 1 1.6467 -2.5987 -0.3993 39 1 0.3556 -1.9520 -1.4400 40 1 2.1024 1.1191 -2.2604 41 1 0.6814 0.1054 -2.6088 42 1 2.9359 -0.0773 -6.7311 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000078646644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:08 Heat of formation + Delta-G solvation = -19.859549 kcal Electronic energy + Delta-G solvation = -26096.819180 eV Core-core repulsion = 22270.072030 eV Total energy + Delta-G solvation = -3826.747149 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.45834 -41.54768 -39.49177 -38.28808 -37.17263 -35.24747 -34.97163 -34.66886 -32.07177 -30.89827 -29.62975 -28.97404 -27.02885 -25.42429 -24.29323 -23.52529 -23.48008 -22.05804 -20.79804 -19.57783 -19.15124 -18.95661 -17.88324 -17.55952 -17.34796 -17.30449 -16.61657 -16.41686 -16.20045 -15.81373 -15.50215 -15.39518 -15.09872 -14.75945 -14.59510 -14.33457 -14.14283 -13.86384 -13.52868 -13.15289 -12.93180 -12.80981 -12.68707 -12.37221 -12.35874 -12.26671 -12.23640 -12.07495 -11.90403 -11.81044 -11.47444 -10.75624 -10.73165 -10.51402 -9.37989 -8.94769 -8.65886 -8.24632 -6.29263 0.17492 0.28770 1.38506 1.41564 1.45970 1.51654 1.61820 1.77063 1.93450 2.38339 2.42100 2.73720 3.08621 3.28014 3.54091 3.75607 4.08878 4.12069 4.18376 4.20972 4.27742 4.36848 4.53455 4.59059 4.69660 4.76701 4.85108 4.90569 4.95628 5.06926 5.18368 5.25144 5.28603 5.29865 5.38446 5.55443 5.56974 5.75237 5.94612 5.97969 6.21568 6.29628 6.49030 6.70783 6.78183 7.13184 7.24458 7.34249 8.92682 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.026581 B = 0.002603 C = 0.002433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.132287 B =10752.799294 C =11505.334396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 H 0.124 0.876 4 C 0.523 3.477 5 O -0.539 6.539 6 N -0.654 5.654 7 C 0.153 3.847 8 C -0.115 4.115 9 C -0.069 4.069 10 C 0.064 3.936 11 N -0.624 5.624 12 H 0.447 0.553 13 C 0.675 3.325 14 O -0.604 6.604 15 N -0.639 5.639 16 H 0.439 0.561 17 C 0.087 3.913 18 C -0.129 4.129 19 N -0.536 5.536 20 C 0.044 3.956 21 C 0.176 3.824 22 C -0.520 4.520 23 H 0.027 0.973 24 C 0.001 3.999 25 N -0.954 5.954 26 Si 0.954 3.046 27 H -0.264 1.264 28 H -0.287 1.287 29 H -0.238 1.238 30 H 0.106 0.894 31 H 0.064 0.936 32 H 0.056 0.944 33 H 0.432 0.568 34 H 0.178 0.822 35 H 0.176 0.824 36 H 0.122 0.878 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.037 0.963 41 H 0.003 0.997 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.090 5.354 27.692 30.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.054 4.054 3 H 0.142 0.858 4 C 0.311 3.689 5 O -0.414 6.414 6 N -0.302 5.302 7 C 0.056 3.944 8 C -0.136 4.136 9 C -0.091 4.091 10 C -0.039 4.039 11 N -0.271 5.271 12 H 0.292 0.708 13 C 0.375 3.625 14 O -0.484 6.484 15 N -0.285 5.285 16 H 0.281 0.719 17 C -0.016 4.016 18 C -0.153 4.153 19 N -0.260 5.260 20 C -0.104 4.104 21 C 0.049 3.951 22 C -0.558 4.558 23 H 0.045 0.955 24 C -0.195 4.195 25 N -0.595 5.595 26 Si 0.777 3.223 27 H -0.189 1.189 28 H -0.213 1.213 29 H -0.161 1.161 30 H 0.125 0.875 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.272 0.728 34 H 0.196 0.804 35 H 0.194 0.806 36 H 0.140 0.860 37 H 0.055 0.945 38 H 0.089 0.911 39 H 0.048 0.952 40 H 0.055 0.945 41 H 0.020 0.980 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.524 4.151 27.811 29.688 hybrid contribution -0.227 0.229 -1.082 1.129 sum -9.752 4.380 26.729 28.788 Atomic orbital electron populations 1.22393 0.93158 1.03216 1.04760 1.21814 0.95941 0.99214 0.88390 0.85819 1.20927 0.79141 0.83975 0.84859 1.90678 1.36801 1.27458 1.86481 1.43309 1.56880 1.27268 1.02757 1.17468 0.92255 0.96616 0.88028 1.21036 1.00188 1.01534 0.90848 1.20292 0.92594 0.95861 1.00319 1.18297 0.96951 1.00642 0.87977 1.42746 1.17910 1.48736 1.17755 0.70817 1.16061 0.82979 0.81753 0.81715 1.91066 1.47949 1.44480 1.64860 1.42985 1.21242 1.48787 1.15462 0.71915 1.17901 0.88541 0.99172 0.95985 1.20068 0.97578 1.01320 0.96320 1.61660 1.59175 1.03127 1.01988 1.22193 0.96215 0.90742 1.01298 1.19967 0.94354 0.93626 0.87133 1.21303 1.29328 1.12219 0.92970 0.95467 1.25976 0.97011 1.01300 0.95230 1.70087 1.45333 1.42997 1.01086 0.85618 0.79861 0.78829 0.78025 1.18853 1.21290 1.16104 0.87492 0.91743 0.92469 0.72759 0.80435 0.80640 0.86036 0.94464 0.91133 0.95224 0.94512 0.97957 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.54 8.34 71.98 0.60 -2.94 16 2 C 0.06 1.58 2.73 44.17 0.12 1.70 16 3 H 0.12 2.85 7.93 -2.38 -0.02 2.83 16 4 C 0.52 13.55 6.69 87.66 0.59 14.14 16 5 O -0.54 -19.07 11.77 -3.05 -0.04 -19.10 16 6 N -0.65 -10.15 5.20 -303.40 -1.58 -11.72 16 7 C 0.15 2.51 6.30 38.12 0.24 2.75 16 8 C -0.11 -0.99 9.95 22.41 0.22 -0.76 16 9 C -0.07 -0.58 10.06 22.33 0.22 -0.35 16 10 C 0.06 0.97 7.26 38.37 0.28 1.25 16 11 N -0.62 -9.83 6.16 -317.31 -1.95 -11.79 16 12 H 0.45 4.18 8.96 -92.71 -0.83 3.35 16 13 C 0.68 16.04 9.21 179.15 1.65 17.69 16 14 O -0.60 -18.83 18.05 -4.32 -0.08 -18.91 16 15 N -0.64 -13.98 6.15 -317.49 -1.95 -15.93 16 16 H 0.44 8.62 8.96 -92.71 -0.83 7.79 16 17 C 0.09 1.80 7.25 38.38 0.28 2.08 16 18 C -0.13 -2.90 8.71 22.47 0.20 -2.70 16 19 N -0.54 -21.55 4.44 -906.04 -4.02 -25.57 16 20 C 0.04 1.75 8.31 127.69 1.06 2.82 16 21 C 0.18 7.92 3.36 85.56 0.29 8.21 16 22 C -0.52 -30.08 9.07 25.60 0.23 -29.85 16 23 H 0.03 1.81 7.35 -2.91 -0.02 1.79 16 24 C 0.00 0.08 5.47 84.65 0.46 0.54 16 25 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 26 Si 0.95 42.17 27.47 68.60 1.88 44.06 16 27 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 28 H -0.29 -12.64 7.11 99.48 0.71 -11.94 16 29 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 30 H 0.11 1.09 7.67 -2.39 -0.02 1.08 16 31 H 0.06 1.45 6.91 -2.38 -0.02 1.44 16 32 H 0.06 1.27 6.41 -2.39 -0.02 1.25 16 33 H 0.43 2.97 8.39 -92.71 -0.78 2.19 16 34 H 0.18 0.16 8.06 -2.91 -0.02 0.14 16 35 H 0.18 0.12 8.06 -2.91 -0.02 0.09 16 36 H 0.12 3.47 6.22 -2.91 -0.02 3.45 16 37 H 0.04 1.76 6.86 -2.38 -0.02 1.74 16 38 H 0.07 2.73 5.82 -2.39 -0.01 2.72 16 39 H 0.03 1.06 6.46 -2.39 -0.02 1.05 16 40 H 0.04 1.56 7.36 -2.39 -0.02 1.55 16 41 H 0.00 0.12 6.11 -2.39 -0.01 0.11 16 42 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 Total: -1.00 -85.53 342.51 -2.37 -87.91 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -1.38 Total: 16.41 kcal Atomic # 6 Polarization: 8.11 SS G_CDS: 6.44 Total: 14.55 kcal Atomic # 7 Polarization: -115.71 SS G_CDS: -9.21 Total: -124.91 kcal Atomic # 8 Polarization: -37.90 SS G_CDS: -0.11 Total: -38.01 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 1.88 Total: 44.06 kcal Total: -85.53 -2.37 -87.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000078646644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.047 kcal (2) G-P(sol) polarization free energy of solvation -85.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds