Wall clock time and date at job start Tue Mar 31 2020 14:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47471 * 2 1 4 4 C 1.50700 * 109.46846 * 120.00270 * 2 1 3 5 5 H 1.07999 * 120.00022 * 119.99852 * 4 2 1 6 6 C 1.37881 * 119.99785 * 299.99580 * 4 2 1 7 7 N 1.31516 * 119.99728 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00058 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46891 * 89.99948 * 8 6 4 10 10 H 1.48496 * 109.46674 * 209.99613 * 8 6 4 11 11 H 1.48496 * 109.47136 * 329.99846 * 8 6 4 12 12 N 1.46497 * 109.47123 * 240.00085 * 2 1 3 13 13 C 1.46504 * 119.99825 * 300.00471 * 12 2 1 14 14 C 1.38397 * 120.00096 * 120.00195 * 12 2 1 15 15 N 1.32473 * 119.17625 * 180.02562 * 14 12 2 16 16 C 1.32897 * 120.60838 * 179.97438 * 15 14 12 17 17 N 1.38526 * 120.48760 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00412 * 185.01726 * 17 16 15 19 19 C 1.46501 * 119.99724 * 5.02116 * 17 16 15 20 20 C 1.39685 * 119.03147 * 359.97438 * 16 15 14 21 21 C 1.38095 * 118.48900 * 0.02562 * 20 16 15 22 22 C 1.50699 * 120.35228 * 179.97438 * 21 20 16 23 23 F 1.39902 * 109.47009 * 90.00079 * 22 21 20 24 24 F 1.39894 * 109.46745 * 209.99493 * 22 21 20 25 25 F 1.39889 * 109.47267 * 330.00140 * 22 21 20 26 26 N 1.32467 * 119.17810 * 359.97438 * 14 12 2 27 27 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47037 * 300.00364 * 1 2 3 29 29 H 1.09003 * 109.46737 * 59.99707 * 1 2 3 30 30 H 0.96999 * 119.99987 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46592 * 269.99880 * 13 12 2 32 32 H 1.08996 * 109.47597 * 29.99652 * 13 12 2 33 33 H 1.09002 * 109.46782 * 150.00419 * 13 12 2 34 34 H 1.09009 * 109.46677 * 90.00138 * 18 17 16 35 35 H 1.09002 * 109.47624 * 209.99922 * 18 17 16 36 36 H 1.09001 * 109.47463 * 330.00466 * 18 17 16 37 37 H 1.09002 * 109.47482 * 359.97438 * 19 17 16 38 38 H 1.09000 * 109.47320 * 120.00215 * 19 17 16 39 39 H 1.09008 * 109.46962 * 240.00304 * 19 17 16 40 40 H 1.07999 * 120.75709 * 179.72920 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1379 -0.8591 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9759 1.9950 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.8140 -0.0180 -2.1071 15 7 3.2462 -0.6581 -3.1834 16 6 4.0113 -0.0398 -4.0769 17 7 4.4622 -0.7117 -5.2012 18 6 5.3935 -0.0557 -6.1224 19 6 4.0077 -2.0784 -5.4691 20 6 4.3543 1.2978 -3.8657 21 6 3.8826 1.9274 -2.7308 22 6 4.2274 3.3695 -2.4610 23 9 3.2567 4.1965 -3.0365 24 9 4.2674 3.5887 -1.0799 25 9 5.4777 3.6618 -3.0161 26 7 3.1237 1.2501 -1.8816 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9039 -0.5275 4.4375 31 1 2.4156 -2.7377 -0.9717 32 1 0.6904 -2.3002 -0.9847 33 1 1.6238 -2.2851 -2.5002 34 1 6.4178 -0.2625 -5.8119 35 1 5.2357 -0.4369 -7.1313 36 1 5.2201 1.0203 -6.1093 37 1 3.3250 -2.3955 -4.6807 38 1 3.4932 -2.1086 -6.4296 39 1 4.8672 -2.7484 -5.4961 40 1 4.9782 1.8260 -4.5715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080760266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:46 Heat of formation + Delta-G solvation = -55.776674 kcal Electronic energy + Delta-G solvation = -27950.481443 eV Core-core repulsion = 23580.320070 eV Total energy + Delta-G solvation = -4370.161373 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.00153 -47.57174 -47.39970 -40.78754 -37.61849 -36.37113 -33.59760 -32.53533 -31.11365 -29.98304 -28.64079 -26.91934 -26.07343 -25.30229 -25.09416 -22.47399 -21.71761 -19.84324 -18.56717 -18.38433 -18.25695 -17.22501 -16.72462 -16.27186 -15.83912 -15.55668 -15.07642 -14.90903 -14.50060 -14.39756 -14.31674 -14.16233 -13.91668 -13.59607 -13.57089 -13.55287 -13.12668 -12.72557 -12.68629 -12.53544 -12.34357 -12.23880 -12.02643 -11.80890 -11.41963 -11.30774 -11.00055 -10.66116 -10.50260 -10.22248 -10.09288 -9.60627 -9.28205 -8.83004 -8.61520 -8.09538 -7.21985 -6.14204 -4.15242 1.14004 1.67101 2.46250 2.79010 3.24305 3.33949 3.38697 3.41737 3.71589 4.03208 4.21698 4.35668 4.59241 4.66580 4.94966 4.99518 5.10503 5.17977 5.22957 5.26779 5.45127 5.46100 5.56071 5.68836 5.85561 6.09393 6.11855 6.21455 6.30026 6.36227 6.48403 6.60456 6.84717 6.91994 7.19577 7.41905 7.50506 7.63790 8.03374 8.45771 8.70187 8.88536 9.45854 10.98495 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.005425 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.027575 B = 5160.465994 C = 6793.503574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.238 3.762 3 H 0.073 0.927 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.078 3.922 7 N -0.894 5.894 8 Si 0.880 3.120 9 H -0.277 1.277 10 H -0.293 1.293 11 H -0.260 1.260 12 N -0.543 5.543 13 C 0.109 3.891 14 C 0.615 3.385 15 N -0.613 5.613 16 C 0.482 3.518 17 N -0.606 5.606 18 C 0.094 3.906 19 C 0.092 3.908 20 C -0.326 4.326 21 C 0.164 3.836 22 C 0.524 3.476 23 F -0.172 7.172 24 F -0.158 7.158 25 F -0.173 7.173 26 N -0.562 5.562 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.033 0.967 30 H 0.266 0.734 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.068 2.604 -19.707 20.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.136 3.864 3 H 0.090 0.910 4 C -0.566 4.566 5 H 0.097 0.903 6 C -0.125 4.125 7 N -0.531 5.531 8 Si 0.710 3.290 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.185 1.185 12 N -0.252 5.252 13 C -0.034 4.034 14 C 0.258 3.742 15 N -0.348 5.348 16 C 0.236 3.764 17 N -0.321 5.321 18 C -0.049 4.049 19 C -0.050 4.050 20 C -0.360 4.360 21 C 0.014 3.986 22 C 0.468 3.532 23 F -0.153 7.153 24 F -0.139 7.139 25 F -0.154 7.154 26 N -0.288 5.288 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.052 0.948 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.112 0.888 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 3.378 1.902 -18.766 19.162 hybrid contribution 0.070 1.321 -0.243 1.345 sum 3.448 3.223 -19.009 19.586 Atomic orbital electron populations 1.22496 0.98973 1.01192 0.99396 1.19489 0.89933 0.95314 0.81683 0.90955 1.21135 1.32818 1.14330 0.88346 0.90350 1.24831 0.95618 0.96533 0.95532 1.69871 1.45120 1.40154 0.97978 0.86954 0.80384 0.83920 0.77735 1.20416 1.22062 1.18503 1.46610 1.47154 1.11117 1.20336 1.21480 1.00754 0.80603 1.00574 1.18713 0.86489 0.83915 0.85033 1.67319 1.22422 1.38918 1.06106 1.17873 0.86303 0.86900 0.85357 1.46088 1.48436 1.15271 1.22257 1.21739 0.92235 0.98553 0.92403 1.21679 1.00121 0.81236 1.01994 1.21219 1.15222 0.96283 1.03242 1.20510 0.94076 0.92625 0.91428 1.17876 0.74315 0.85997 0.74983 1.93216 1.63264 1.74210 1.84659 1.93273 1.95962 1.95371 1.29329 1.93179 1.42462 1.94244 1.85528 1.67470 1.20433 1.08905 1.31977 0.92458 0.92879 0.94764 0.92401 0.92974 0.90946 0.91701 0.92641 0.90879 0.90769 0.88789 0.92874 0.92800 0.83859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.50 8.65 37.16 0.32 -3.17 16 2 C 0.24 5.71 2.25 -69.08 -0.16 5.55 16 3 H 0.07 1.88 5.82 -51.93 -0.30 1.58 16 4 C -0.53 -14.62 8.95 -34.44 -0.31 -14.92 16 5 H 0.08 2.37 7.89 -52.49 -0.41 1.95 16 6 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 7 N -0.89 -26.96 13.96 55.43 0.77 -26.19 16 8 Si 0.88 21.77 24.37 -169.99 -4.14 17.62 16 9 H -0.28 -6.55 6.87 56.52 0.39 -6.16 16 10 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.26 -6.32 6.53 56.52 0.37 -5.95 16 12 N -0.54 -11.61 2.85 -177.62 -0.51 -12.11 16 13 C 0.11 1.96 9.68 59.85 0.58 2.54 16 14 C 0.61 12.72 8.18 -322.88 -2.64 10.08 16 15 N -0.61 -10.98 7.67 -13.16 -0.10 -11.08 16 16 C 0.48 7.39 7.39 -154.85 -1.14 6.25 16 17 N -0.61 -6.96 3.38 -189.49 -0.64 -7.60 16 18 C 0.09 0.71 10.35 59.84 0.62 1.33 16 19 C 0.09 0.89 10.72 59.85 0.64 1.54 16 20 C -0.33 -4.86 8.67 -39.09 -0.34 -5.20 16 21 C 0.16 2.90 6.31 -82.35 -0.52 2.38 16 22 C 0.52 8.40 3.45 36.01 0.12 8.52 16 23 F -0.17 -2.65 17.30 2.25 0.04 -2.61 16 24 F -0.16 -2.88 17.07 2.25 0.04 -2.84 16 25 F -0.17 -2.38 16.52 2.25 0.04 -2.35 16 26 N -0.56 -11.85 8.49 -10.24 -0.09 -11.94 16 27 H 0.06 1.15 6.66 -51.93 -0.35 0.80 16 28 H 0.05 1.19 3.27 -51.93 -0.17 1.02 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 31 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.07 1.24 6.43 -51.93 -0.33 0.91 16 33 H 0.06 1.02 7.33 -51.93 -0.38 0.64 16 34 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 35 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 36 H 0.07 0.53 6.04 -51.93 -0.31 0.21 16 37 H 0.09 1.09 6.85 -51.93 -0.36 0.74 16 38 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 40 H 0.14 1.67 5.76 -52.49 -0.30 1.37 16 LS Contribution 335.30 15.07 5.05 5.05 Total: -1.00 -31.82 335.30 -7.09 -38.90 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.63 Total: -1.85 kcal Atomic # 6 Polarization: 19.91 SS G_CDS: -2.92 Total: 16.99 kcal Atomic # 7 Polarization: -68.36 SS G_CDS: -0.56 Total: -68.92 kcal Atomic # 9 Polarization: -7.91 SS G_CDS: 0.11 Total: -7.80 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.14 Total: 17.62 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -31.82 -7.09 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.874 kcal (2) G-P(sol) polarization free energy of solvation -31.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds