Wall clock time and date at job start Tue Mar 31 2020 14:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47471 * 2 1 4 4 C 1.50700 * 109.46846 * 120.00270 * 2 1 3 5 5 H 1.07999 * 120.00022 * 119.99852 * 4 2 1 6 6 C 1.37881 * 119.99785 * 299.99580 * 4 2 1 7 7 N 1.31516 * 119.99728 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00058 * 0.02562 * 6 4 2 9 9 H 1.48499 * 109.46891 * 89.99948 * 8 6 4 10 10 H 1.48496 * 109.46674 * 209.99613 * 8 6 4 11 11 H 1.48496 * 109.47136 * 329.99846 * 8 6 4 12 12 N 1.46497 * 109.47123 * 240.00085 * 2 1 3 13 13 C 1.46504 * 119.99825 * 300.00471 * 12 2 1 14 14 C 1.38397 * 120.00096 * 120.00195 * 12 2 1 15 15 N 1.32473 * 119.17625 * 180.02562 * 14 12 2 16 16 C 1.32897 * 120.60838 * 179.97438 * 15 14 12 17 17 N 1.38526 * 120.48760 * 179.97438 * 16 15 14 18 18 C 1.46496 * 120.00412 * 185.01726 * 17 16 15 19 19 C 1.46501 * 119.99724 * 5.02116 * 17 16 15 20 20 C 1.39685 * 119.03147 * 359.97438 * 16 15 14 21 21 C 1.38095 * 118.48900 * 0.02562 * 20 16 15 22 22 C 1.50699 * 120.35228 * 179.97438 * 21 20 16 23 23 F 1.39902 * 109.47009 * 90.00079 * 22 21 20 24 24 F 1.39894 * 109.46745 * 209.99493 * 22 21 20 25 25 F 1.39889 * 109.47267 * 330.00140 * 22 21 20 26 26 N 1.32467 * 119.17810 * 359.97438 * 14 12 2 27 27 H 1.08998 * 109.47208 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47037 * 300.00364 * 1 2 3 29 29 H 1.09003 * 109.46737 * 59.99707 * 1 2 3 30 30 H 0.96999 * 119.99987 * 179.97438 * 7 6 4 31 31 H 1.09003 * 109.46592 * 269.99880 * 13 12 2 32 32 H 1.08996 * 109.47597 * 29.99652 * 13 12 2 33 33 H 1.09002 * 109.46782 * 150.00419 * 13 12 2 34 34 H 1.09009 * 109.46677 * 90.00138 * 18 17 16 35 35 H 1.09002 * 109.47624 * 209.99922 * 18 17 16 36 36 H 1.09001 * 109.47463 * 330.00466 * 18 17 16 37 37 H 1.09002 * 109.47482 * 359.97438 * 19 17 16 38 38 H 1.09000 * 109.47320 * 120.00215 * 19 17 16 39 39 H 1.09008 * 109.46962 * 240.00304 * 19 17 16 40 40 H 1.07999 * 120.75709 * 179.72920 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2394 2.4827 7 7 2.1379 -0.8591 3.5565 8 14 0.6248 1.2791 2.6541 9 1 -0.8028 0.8727 2.6997 10 1 0.9759 1.9950 3.9068 11 1 0.8471 2.1765 1.4921 12 7 2.0183 -0.6906 -1.1962 13 6 1.6643 -2.0932 -1.4280 14 6 2.8140 -0.0180 -2.1071 15 7 3.2462 -0.6581 -3.1834 16 6 4.0113 -0.0398 -4.0769 17 7 4.4622 -0.7117 -5.2012 18 6 5.3935 -0.0557 -6.1224 19 6 4.0077 -2.0784 -5.4691 20 6 4.3543 1.2978 -3.8657 21 6 3.8826 1.9274 -2.7308 22 6 4.2274 3.3695 -2.4610 23 9 3.2567 4.1965 -3.0365 24 9 4.2674 3.5887 -1.0799 25 9 5.4777 3.6618 -3.0161 26 7 3.1237 1.2501 -1.8816 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.9039 -0.5275 4.4375 31 1 2.4156 -2.7377 -0.9717 32 1 0.6904 -2.3002 -0.9847 33 1 1.6238 -2.2851 -2.5002 34 1 6.4178 -0.2625 -5.8119 35 1 5.2357 -0.4369 -7.1313 36 1 5.2201 1.0203 -6.1093 37 1 3.3250 -2.3955 -4.6807 38 1 3.4932 -2.1086 -6.4296 39 1 4.8672 -2.7484 -5.4961 40 1 4.9782 1.8260 -4.5715 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000080760266.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:46 Heat of formation + Delta-G solvation = -73.464241 kcal Electronic energy + Delta-G solvation = -27951.248434 eV Core-core repulsion = 23580.320070 eV Total energy + Delta-G solvation = -4370.928363 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -51.25627 -48.77318 -48.72014 -42.09803 -38.92448 -37.69149 -35.20980 -34.22888 -32.59875 -31.58923 -29.52195 -28.02332 -27.53810 -27.10086 -26.33010 -23.98159 -22.93989 -21.38744 -19.85721 -19.63811 -19.56611 -18.78188 -18.44303 -17.65962 -17.13185 -16.80331 -16.58844 -16.23860 -15.68777 -15.57912 -15.53042 -15.41759 -15.15494 -15.10044 -14.87465 -14.86026 -14.85545 -14.30489 -14.07513 -13.67224 -13.63240 -13.33227 -13.10780 -13.06369 -12.99551 -12.88391 -12.45022 -12.24954 -12.09535 -11.76541 -11.61779 -11.50669 -11.16642 -10.77916 -10.20602 -9.16523 -8.68302 -8.33440 -6.38067 -0.17059 0.37599 1.22779 1.28127 1.38215 1.47137 1.68989 2.01769 2.29486 2.42863 2.69318 2.96320 3.02489 3.32049 3.54696 3.69963 3.98700 4.16834 4.30676 4.37555 4.49899 4.51650 4.57414 4.61726 4.64365 4.71741 4.80169 4.82932 4.94341 4.94787 5.04876 5.12268 5.29190 5.52067 5.59995 5.94843 6.02626 6.16175 6.34432 6.62380 6.66471 7.22984 7.36339 8.83025 Molecular weight = 318.14amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.005425 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.027575 B = 5160.465994 C = 6793.503574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.246 3.754 3 H 0.052 0.948 4 C -0.525 4.525 5 H 0.037 0.963 6 C 0.025 3.975 7 N -0.941 5.941 8 Si 0.940 3.060 9 H -0.254 1.254 10 H -0.296 1.296 11 H -0.255 1.255 12 N -0.562 5.562 13 C 0.117 3.883 14 C 0.600 3.400 15 N -0.617 5.617 16 C 0.470 3.530 17 N -0.597 5.597 18 C 0.084 3.916 19 C 0.088 3.912 20 C -0.303 4.303 21 C 0.140 3.860 22 C 0.531 3.469 23 F -0.168 7.168 24 F -0.175 7.175 25 F -0.157 7.157 26 N -0.607 5.607 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.268 0.732 31 H 0.034 0.966 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.066 3.351 -23.002 23.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.143 3.857 3 H 0.070 0.930 4 C -0.564 4.564 5 H 0.056 0.944 6 C -0.174 4.174 7 N -0.581 5.581 8 Si 0.766 3.234 9 H -0.180 1.180 10 H -0.224 1.224 11 H -0.180 1.180 12 N -0.274 5.274 13 C -0.026 4.026 14 C 0.243 3.757 15 N -0.352 5.352 16 C 0.222 3.778 17 N -0.310 5.310 18 C -0.058 4.058 19 C -0.054 4.054 20 C -0.335 4.335 21 C -0.007 4.007 22 C 0.475 3.525 23 F -0.149 7.149 24 F -0.156 7.156 25 F -0.138 7.138 26 N -0.335 5.335 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.084 0.916 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 3.427 2.657 -22.172 22.592 hybrid contribution 0.293 1.007 0.524 1.172 sum 3.720 3.664 -21.648 22.269 Atomic orbital electron populations 1.22349 0.96781 1.02150 0.99979 1.19091 0.91469 0.93820 0.81321 0.93028 1.21339 1.31675 1.12985 0.90356 0.94438 1.25620 0.97103 0.99510 0.95130 1.70009 1.47209 1.42238 0.98614 0.85998 0.79734 0.80198 0.77446 1.17971 1.22370 1.17953 1.46448 1.48681 1.12020 1.20229 1.21487 1.00260 0.79024 1.01817 1.18807 0.86883 0.84181 0.85807 1.67340 1.23074 1.38862 1.05946 1.18273 0.85960 0.87491 0.86043 1.46520 1.47687 1.15798 1.20963 1.22088 0.91765 0.98961 0.92958 1.21832 1.00697 0.80486 1.02432 1.21593 1.13526 0.96089 1.02324 1.20817 0.94507 0.93211 0.92138 1.17721 0.74885 0.85591 0.74314 1.93221 1.63244 1.74008 1.84444 1.93237 1.96097 1.95430 1.30882 1.93206 1.41396 1.94099 1.85133 1.67371 1.22563 1.09618 1.33903 0.91387 0.93604 0.92623 0.92282 0.94736 0.90466 0.89471 0.91605 0.87888 0.90025 0.91048 0.90216 0.91060 0.80322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.50 8.65 71.98 0.62 -5.88 16 2 C 0.25 12.01 2.25 44.25 0.10 12.11 16 3 H 0.05 2.74 5.82 -2.39 -0.01 2.73 16 4 C -0.52 -30.17 8.95 25.60 0.23 -29.94 16 5 H 0.04 2.40 7.89 -2.91 -0.02 2.38 16 6 C 0.02 1.46 5.45 84.66 0.46 1.92 16 7 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 8 Si 0.94 45.39 24.37 68.60 1.67 47.07 16 9 H -0.25 -11.28 6.87 99.48 0.68 -10.59 16 10 H -0.30 -14.30 7.11 99.48 0.71 -13.60 16 11 H -0.26 -12.03 6.53 99.48 0.65 -11.38 16 12 N -0.56 -24.44 2.85 -715.88 -2.04 -26.48 16 13 C 0.12 4.25 9.68 127.77 1.24 5.48 16 14 C 0.60 24.96 8.18 261.51 2.14 27.10 16 15 N -0.62 -21.61 7.67 -195.56 -1.50 -23.11 16 16 C 0.47 13.39 7.39 133.21 0.98 14.38 16 17 N -0.60 -11.64 3.38 -753.43 -2.54 -14.19 16 18 C 0.08 0.88 10.35 127.77 1.32 2.20 16 19 C 0.09 1.41 10.72 127.77 1.37 2.78 16 20 C -0.30 -8.28 8.67 22.59 0.20 -8.09 16 21 C 0.14 4.82 6.31 42.42 0.27 5.09 16 22 C 0.53 16.46 3.45 71.24 0.25 16.71 16 23 F -0.17 -4.95 17.30 44.97 0.78 -4.17 16 24 F -0.18 -6.41 17.07 44.97 0.77 -5.64 16 25 F -0.16 -4.01 16.52 44.97 0.74 -3.27 16 26 N -0.61 -25.78 8.49 -186.31 -1.58 -27.36 16 27 H 0.07 2.67 6.66 -2.39 -0.02 2.65 16 28 H 0.05 1.98 3.27 -2.39 -0.01 1.97 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 31 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.08 2.66 6.43 -2.39 -0.02 2.64 16 33 H 0.09 2.71 7.33 -2.39 -0.02 2.69 16 34 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 35 H 0.10 0.55 8.07 -2.39 -0.02 0.53 16 36 H 0.08 0.77 6.04 -2.39 -0.01 0.75 16 37 H 0.07 1.53 6.85 -2.39 -0.02 1.51 16 38 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.18 3.44 5.76 -2.91 -0.02 3.43 16 Total: -1.00 -72.11 335.30 6.78 -65.33 By element: Atomic # 1 Polarization: 5.38 SS G_CDS: 1.01 Total: 6.39 kcal Atomic # 6 Polarization: 34.69 SS G_CDS: 9.17 Total: 43.86 kcal Atomic # 7 Polarization: -142.21 SS G_CDS: -7.37 Total: -149.58 kcal Atomic # 9 Polarization: -15.36 SS G_CDS: 2.29 Total: -13.07 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 1.67 Total: 47.07 kcal Total: -72.11 6.78 -65.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080760266.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.133 kcal (2) G-P(sol) polarization free energy of solvation -72.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds