Wall clock time and date at job start Tue Mar 31 2020 14:10:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46876 * 2 1 4 4 C 1.50695 * 109.47298 * 240.00111 * 2 1 3 5 5 H 1.07998 * 120.00106 * 240.00384 * 4 2 1 6 6 C 1.37880 * 120.00150 * 59.99485 * 4 2 1 7 7 N 1.31516 * 119.99709 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00198 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47119 * 60.00615 * 8 6 4 10 10 H 1.48499 * 109.47067 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47372 * 300.00196 * 8 6 4 12 12 N 1.46500 * 109.47071 * 119.99705 * 2 1 3 13 13 C 1.34775 * 120.00219 * 275.00076 * 12 2 1 14 14 O 1.21589 * 119.99968 * 0.02562 * 13 12 2 15 15 N 1.34771 * 119.99841 * 180.02562 * 13 12 2 16 16 C 1.40139 * 120.00212 * 184.59486 * 15 13 12 17 17 C 1.39209 * 119.84649 * 144.84351 * 16 15 13 18 18 C 1.37691 * 120.32206 * 180.02562 * 17 16 15 19 19 C 1.39564 * 119.82120 * 0.04556 * 18 17 16 20 20 N 1.36280 * 133.57609 * 180.34235 * 19 18 17 21 21 C 1.30787 * 108.68595 * 180.02562 * 20 19 18 22 22 N 1.37739 * 124.94962 * 179.83527 * 21 20 19 23 23 C 1.46500 * 120.00058 * 359.69998 * 22 21 20 24 24 C 1.46509 * 120.00178 * 179.69463 * 22 21 20 25 25 O 1.34484 * 110.09837 * 359.57170 * 21 20 19 26 26 C 1.35311 * 108.19979 * 0.26339 * 25 21 20 27 27 C 1.38505 * 133.70688 * 180.02562 * 26 25 21 28 28 H 1.09003 * 109.47173 * 59.99742 * 1 2 3 29 29 H 1.08993 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47156 * 300.00043 * 1 2 3 31 31 H 0.97006 * 120.00125 * 179.97438 * 7 6 4 32 32 H 0.97002 * 119.99424 * 95.00091 * 12 2 1 33 33 H 0.97002 * 120.00784 * 4.58801 * 15 13 12 34 34 H 1.07997 * 119.83550 * 0.02697 * 17 16 15 35 35 H 1.08000 * 120.09072 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47466 * 90.00221 * 23 22 21 37 37 H 1.09001 * 109.46946 * 329.99234 * 23 22 21 38 38 H 1.09008 * 109.46870 * 209.99887 * 23 22 21 39 39 H 1.08997 * 109.47348 * 179.97438 * 24 22 21 40 40 H 1.09000 * 109.46754 * 300.00635 * 24 22 21 41 41 H 1.08999 * 109.46771 * 60.00131 * 24 22 21 42 42 H 1.07999 * 120.07879 * 359.95549 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8258 -2.5201 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8063 -1.1208 -4.0082 12 7 2.0183 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8574 1.1614 2.4118 15 7 2.5968 -0.6534 3.4574 16 6 2.6397 0.0188 4.6863 17 6 2.3776 -0.6744 5.8647 18 6 2.4165 -0.0236 7.0775 19 6 2.7193 1.3380 7.1250 20 7 2.8383 2.2390 8.1405 21 6 3.1424 3.4052 7.6325 22 7 3.3380 4.5569 8.3622 23 6 3.2015 4.5322 9.8206 24 6 3.6827 5.8068 7.6799 25 8 3.2421 3.3146 6.2945 26 6 2.9841 2.0353 5.9371 27 6 2.9430 1.3706 4.7226 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.7094 1.1618 -3.4844 32 1 2.2490 -1.6317 1.1526 33 1 2.8907 -1.5760 3.3989 34 1 2.1426 -1.7279 5.8275 35 1 2.2130 -0.5651 7.9894 36 1 4.1660 4.2998 10.2720 37 1 2.4745 3.7713 10.1046 38 1 2.8622 5.5073 10.1704 39 1 3.7966 6.6029 8.4156 40 1 4.6183 5.6776 7.1358 41 1 2.8891 6.0697 6.9805 42 1 3.1461 1.9046 3.8062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000119337886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:17 Heat of formation + Delta-G solvation = 34.832407 kcal Electronic energy + Delta-G solvation = -25740.032045 eV Core-core repulsion = 21915.656517 eV Total energy + Delta-G solvation = -3824.375528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.01341 -39.99004 -37.95296 -37.03243 -35.17714 -34.46197 -33.42981 -32.31944 -30.50029 -29.29731 -28.55016 -27.94708 -25.67446 -25.25110 -23.06274 -22.59401 -21.39845 -20.88510 -19.86054 -18.47090 -18.32150 -17.51278 -16.96625 -16.81606 -15.96567 -15.57450 -15.15167 -14.97126 -14.89632 -14.56771 -14.10539 -13.99541 -13.75516 -13.18226 -13.03749 -12.95953 -12.75154 -12.45646 -12.39553 -12.39388 -11.79410 -11.61456 -11.45421 -11.11384 -10.98996 -10.76937 -10.38929 -10.32649 -10.24001 -10.14354 -9.40741 -9.07555 -8.98352 -8.60675 -8.55592 -7.98800 -7.29885 -6.13712 -4.23158 0.98695 1.34187 1.74211 2.61277 2.94152 3.24772 3.27969 3.30506 3.34657 3.64088 3.97901 4.31106 4.32595 4.68110 4.80565 4.83304 4.94551 4.98323 5.16443 5.18945 5.20237 5.21867 5.33255 5.41222 5.53037 5.72844 5.87431 6.09843 6.28192 6.35088 6.47302 6.53708 6.79113 6.91615 6.97324 7.05649 7.10776 7.21765 7.43983 7.60531 7.81556 7.84866 7.97827 8.13965 8.70599 8.82557 9.20794 9.45018 10.92275 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.002463 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.615877 B =11366.448486 C =12097.243796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.280 3.720 3 H 0.050 0.950 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.717 5.717 13 C 0.692 3.308 14 O -0.581 6.581 15 N -0.692 5.692 16 C 0.187 3.813 17 C -0.136 4.136 18 C -0.063 4.063 19 C 0.035 3.965 20 N -0.537 5.537 21 C 0.492 3.508 22 N -0.582 5.582 23 C 0.112 3.888 24 C 0.093 3.907 25 O -0.230 6.230 26 C 0.017 3.983 27 C -0.088 4.088 28 H 0.091 0.909 29 H 0.026 0.974 30 H 0.015 0.985 31 H 0.265 0.735 32 H 0.387 0.613 33 H 0.406 0.594 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.056 0.944 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.087 0.913 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.257 2.705 22.308 23.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.179 3.821 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.731 3.269 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.368 5.368 13 C 0.392 3.608 14 O -0.459 6.459 15 N -0.340 5.340 16 C 0.089 3.911 17 C -0.158 4.158 18 C -0.083 4.083 19 C -0.077 4.077 20 N -0.279 5.279 21 C 0.191 3.809 22 N -0.309 5.309 23 C -0.029 4.029 24 C -0.049 4.049 25 O -0.121 6.121 26 C -0.034 4.034 27 C -0.110 4.110 28 H 0.109 0.891 29 H 0.045 0.955 30 H 0.034 0.966 31 H 0.075 0.925 32 H 0.219 0.781 33 H 0.241 0.759 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.803 3.919 22.701 23.532 hybrid contribution 0.615 -1.025 -1.691 2.071 sum 5.418 2.894 21.009 21.889 Atomic orbital electron populations 1.22107 0.98500 0.99130 1.00971 1.18692 0.90889 0.93757 0.78800 0.93250 1.21162 1.32609 1.13312 0.90230 0.92089 1.24885 0.94810 0.94975 0.99049 1.69897 1.35717 1.22352 1.24047 0.86481 0.79138 0.79556 0.81749 1.20156 1.21130 1.20186 1.45863 1.68472 1.13347 1.09155 1.16182 0.78650 0.85523 0.80455 1.90883 1.57017 1.14127 1.83836 1.42782 1.68572 1.16322 1.06373 1.16913 0.98546 0.90794 0.84805 1.20731 1.03799 1.00674 0.90551 1.19851 1.00490 0.90166 0.97834 1.19550 1.04944 0.95339 0.87850 1.70936 1.29833 0.97550 1.29559 1.21414 0.93059 0.88755 0.77636 1.45109 1.75953 1.04025 1.05862 1.21725 1.02480 1.03258 0.75435 1.21810 1.01192 0.83874 0.98068 1.84380 1.75075 1.29593 1.23093 1.19669 1.06185 0.80937 0.96626 1.19877 1.02539 0.93460 0.95118 0.89093 0.95478 0.96555 0.92471 0.78082 0.75863 0.84551 0.84719 0.92547 0.89901 0.90555 0.89446 0.91922 0.91827 0.82881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.28 7.08 2.56 -69.08 -0.18 6.90 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.05 16 4 C -0.53 -13.97 8.73 -34.44 -0.30 -14.27 16 5 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.88 -24.75 11.32 55.43 0.63 -24.12 16 8 Si 0.90 20.46 29.54 -169.99 -5.02 15.44 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 12 N -0.72 -14.64 5.07 -59.81 -0.30 -14.94 16 13 C 0.69 13.87 8.37 -86.92 -0.73 13.14 16 14 O -0.58 -14.02 13.43 5.29 0.07 -13.95 16 15 N -0.69 -10.41 5.35 -14.16 -0.08 -10.48 16 16 C 0.19 2.86 6.30 -83.57 -0.53 2.33 16 17 C -0.14 -1.67 9.94 -39.42 -0.39 -2.06 16 18 C -0.06 -0.81 10.09 -39.29 -0.40 -1.21 16 19 C 0.04 0.55 7.23 -84.63 -0.61 -0.06 16 20 N -0.54 -8.14 10.59 -12.08 -0.13 -8.27 16 21 C 0.49 6.99 8.38 -87.62 -0.73 6.25 16 22 N -0.58 -5.84 3.36 -192.01 -0.64 -6.49 16 23 C 0.11 0.76 10.52 59.85 0.63 1.39 16 24 C 0.09 0.66 10.50 59.85 0.63 1.29 16 25 O -0.23 -3.73 10.43 2.35 0.02 -3.71 16 26 C 0.02 0.28 7.41 -38.72 -0.29 0.00 16 27 C -0.09 -1.54 8.70 -39.35 -0.34 -1.88 16 28 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 32 H 0.39 6.63 8.56 -40.82 -0.35 6.28 16 33 H 0.41 4.49 8.84 -40.82 -0.36 4.13 16 34 H 0.14 1.23 8.06 -52.49 -0.42 0.80 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.66 7.60 -51.93 -0.39 0.27 16 38 H 0.08 0.30 7.92 -51.92 -0.41 -0.12 16 39 H 0.09 0.33 7.79 -51.93 -0.40 -0.07 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.15 3.03 6.21 -52.49 -0.33 2.71 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -33.93 357.13 -8.51 -42.44 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.46 Total: 8.56 kcal Atomic # 6 Polarization: 13.12 SS G_CDS: -2.99 Total: 10.13 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -0.52 Total: -64.30 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: 0.10 Total: -17.66 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.93 -8.51 -42.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119337886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.275 kcal (2) G-P(sol) polarization free energy of solvation -33.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds