Wall clock time and date at job start Tue Mar 31 2020 14:10:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09006 * 109.46876 * 2 1 4 4 C 1.50695 * 109.47298 * 240.00111 * 2 1 3 5 5 H 1.07998 * 120.00106 * 240.00384 * 4 2 1 6 6 C 1.37880 * 120.00150 * 59.99485 * 4 2 1 7 7 N 1.31516 * 119.99709 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00198 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47119 * 60.00615 * 8 6 4 10 10 H 1.48499 * 109.47067 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47372 * 300.00196 * 8 6 4 12 12 N 1.46500 * 109.47071 * 119.99705 * 2 1 3 13 13 C 1.34775 * 120.00219 * 275.00076 * 12 2 1 14 14 O 1.21589 * 119.99968 * 0.02562 * 13 12 2 15 15 N 1.34771 * 119.99841 * 180.02562 * 13 12 2 16 16 C 1.40139 * 120.00212 * 184.59486 * 15 13 12 17 17 C 1.39209 * 119.84649 * 144.84351 * 16 15 13 18 18 C 1.37691 * 120.32206 * 180.02562 * 17 16 15 19 19 C 1.39564 * 119.82120 * 0.04556 * 18 17 16 20 20 N 1.36280 * 133.57609 * 180.34235 * 19 18 17 21 21 C 1.30787 * 108.68595 * 180.02562 * 20 19 18 22 22 N 1.37739 * 124.94962 * 179.83527 * 21 20 19 23 23 C 1.46500 * 120.00058 * 359.69998 * 22 21 20 24 24 C 1.46509 * 120.00178 * 179.69463 * 22 21 20 25 25 O 1.34484 * 110.09837 * 359.57170 * 21 20 19 26 26 C 1.35311 * 108.19979 * 0.26339 * 25 21 20 27 27 C 1.38505 * 133.70688 * 180.02562 * 26 25 21 28 28 H 1.09003 * 109.47173 * 59.99742 * 1 2 3 29 29 H 1.08993 * 109.47038 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47156 * 300.00043 * 1 2 3 31 31 H 0.97006 * 120.00125 * 179.97438 * 7 6 4 32 32 H 0.97002 * 119.99424 * 95.00091 * 12 2 1 33 33 H 0.97002 * 120.00784 * 4.58801 * 15 13 12 34 34 H 1.07997 * 119.83550 * 0.02697 * 17 16 15 35 35 H 1.08000 * 120.09072 * 180.02562 * 18 17 16 36 36 H 1.08999 * 109.47466 * 90.00221 * 23 22 21 37 37 H 1.09001 * 109.46946 * 329.99234 * 23 22 21 38 38 H 1.09008 * 109.46870 * 209.99887 * 23 22 21 39 39 H 1.08997 * 109.47348 * 179.97438 * 24 22 21 40 40 H 1.09000 * 109.46754 * 300.00635 * 24 22 21 41 41 H 1.08999 * 109.46771 * 60.00131 * 24 22 21 42 42 H 1.07999 * 120.07879 * 359.95549 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6992 -0.2394 -2.4827 7 7 0.9435 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 1.8258 -2.5201 -4.0077 10 1 1.8269 -0.4199 -5.2204 11 1 3.8063 -1.1208 -4.0082 12 7 2.0183 -0.6905 1.1962 13 6 2.1471 -0.0182 2.3572 14 8 1.8574 1.1614 2.4118 15 7 2.5968 -0.6534 3.4574 16 6 2.6397 0.0188 4.6863 17 6 2.3776 -0.6744 5.8647 18 6 2.4165 -0.0236 7.0775 19 6 2.7193 1.3380 7.1250 20 7 2.8383 2.2390 8.1405 21 6 3.1424 3.4052 7.6325 22 7 3.3380 4.5569 8.3622 23 6 3.2015 4.5322 9.8206 24 6 3.6827 5.8068 7.6799 25 8 3.2421 3.3146 6.2945 26 6 2.9841 2.0353 5.9371 27 6 2.9430 1.3706 4.7226 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 0.7094 1.1618 -3.4844 32 1 2.2490 -1.6317 1.1526 33 1 2.8907 -1.5760 3.3989 34 1 2.1426 -1.7279 5.8275 35 1 2.2130 -0.5651 7.9894 36 1 4.1660 4.2998 10.2720 37 1 2.4745 3.7713 10.1046 38 1 2.8622 5.5073 10.1704 39 1 3.7966 6.6029 8.4156 40 1 4.6183 5.6776 7.1358 41 1 2.8891 6.0697 6.9805 42 1 3.1461 1.9046 3.8062 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000119337886.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:10:16 Heat of formation + Delta-G solvation = 9.130869 kcal Electronic energy + Delta-G solvation = -25741.146547 eV Core-core repulsion = 21915.656517 eV Total energy + Delta-G solvation = -3825.490030 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.13879 -41.48075 -39.18662 -37.93811 -36.85305 -35.90485 -34.80121 -34.11771 -31.65081 -30.98640 -29.34826 -29.05345 -27.33040 -26.59007 -24.18558 -23.99770 -22.77820 -22.12685 -21.54732 -19.96081 -19.54890 -18.70918 -18.07326 -17.92892 -17.72349 -17.10100 -16.58993 -16.21342 -15.88284 -15.65871 -15.60319 -15.33547 -15.13855 -14.68343 -14.37115 -13.91861 -13.74305 -13.59104 -13.52637 -13.45178 -12.98931 -12.95861 -12.90013 -12.77085 -12.67463 -12.56442 -12.25777 -12.14652 -11.55988 -11.43026 -11.10735 -10.99323 -10.59448 -10.10806 -9.78193 -9.67741 -8.40671 -8.16578 -6.34125 -0.16243 0.21093 0.80976 1.44246 1.47152 1.48744 1.56283 1.70566 2.12305 2.20310 2.43359 2.72639 3.13959 3.39821 3.45713 3.67136 4.02712 4.11496 4.15153 4.38787 4.39609 4.42204 4.59332 4.68109 4.74574 4.78946 4.82596 4.92294 4.93751 5.06219 5.10926 5.16759 5.22332 5.38007 5.41519 5.58024 5.59802 5.66417 5.83760 5.87650 5.98971 6.09624 6.25726 6.73590 6.76758 7.23544 7.34594 7.66737 8.89685 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.024737 B = 0.002463 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.615877 B =11366.448486 C =12097.243796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.288 3.712 3 H -0.002 1.002 4 C -0.545 4.545 5 H 0.077 0.923 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.262 1.262 10 H -0.288 1.288 11 H -0.271 1.271 12 N -0.711 5.711 13 C 0.691 3.309 14 O -0.627 6.627 15 N -0.667 5.667 16 C 0.172 3.828 17 C -0.111 4.111 18 C -0.057 4.057 19 C 0.029 3.971 20 N -0.552 5.552 21 C 0.484 3.516 22 N -0.576 5.576 23 C 0.106 3.894 24 C 0.087 3.913 25 O -0.249 6.249 26 C -0.014 4.014 27 C -0.112 4.112 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.009 0.991 31 H 0.265 0.735 32 H 0.406 0.594 33 H 0.429 0.571 34 H 0.183 0.817 35 H 0.170 0.830 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.113 0.887 39 H 0.129 0.871 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.793 0.600 24.210 24.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.185 3.815 3 H 0.016 0.984 4 C -0.584 4.584 5 H 0.095 0.905 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.799 3.201 9 H -0.187 1.187 10 H -0.214 1.214 11 H -0.196 1.196 12 N -0.363 5.363 13 C 0.391 3.609 14 O -0.508 6.508 15 N -0.318 5.318 16 C 0.075 3.925 17 C -0.132 4.132 18 C -0.077 4.077 19 C -0.083 4.083 20 N -0.295 5.295 21 C 0.183 3.817 22 N -0.303 5.303 23 C -0.034 4.034 24 C -0.055 4.055 25 O -0.142 6.142 26 C -0.065 4.065 27 C -0.134 4.134 28 H 0.085 0.915 29 H 0.062 0.938 30 H 0.028 0.972 31 H 0.074 0.926 32 H 0.242 0.758 33 H 0.269 0.731 34 H 0.200 0.800 35 H 0.187 0.813 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.131 0.869 39 H 0.148 0.852 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.375 1.771 24.673 25.314 hybrid contribution 0.480 -0.233 -2.122 2.188 sum 5.856 1.538 22.551 23.350 Atomic orbital electron populations 1.21924 0.98398 0.99554 0.99450 1.18258 0.90910 0.91663 0.80712 0.98416 1.21501 1.32656 1.13677 0.90525 0.90519 1.25822 0.94894 0.95609 1.02391 1.70059 1.36980 1.23933 1.24690 0.85357 0.78576 0.78725 0.77419 1.18682 1.21378 1.19626 1.45410 1.68685 1.14056 1.08176 1.16290 0.78396 0.84936 0.81249 1.90873 1.58793 1.16427 1.84694 1.42355 1.67432 1.17001 1.04975 1.17140 0.99439 0.90252 0.85640 1.21107 1.01130 1.02354 0.88624 1.20327 0.98969 0.89075 0.99375 1.20030 1.04524 0.96560 0.87234 1.70941 1.31359 0.97868 1.29287 1.22070 0.92483 0.90059 0.77115 1.45716 1.74273 1.03345 1.06946 1.22006 1.02927 1.05020 0.73410 1.22048 1.00499 0.83720 0.99213 1.84341 1.75582 1.29791 1.24458 1.19793 1.08000 0.81565 0.97120 1.19736 1.04793 0.94780 0.94124 0.91461 0.93848 0.97182 0.92555 0.75827 0.73147 0.79992 0.81266 0.91407 0.91220 0.86901 0.85250 0.92434 0.92734 0.86556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.29 14.96 2.56 44.24 0.11 15.08 16 3 H 0.00 -0.13 7.58 -2.38 -0.02 -0.15 16 4 C -0.55 -28.50 8.73 25.60 0.22 -28.27 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.69 5.30 84.66 0.45 1.14 16 7 N -0.92 -52.79 11.32 21.45 0.24 -52.55 16 8 Si 0.97 41.65 29.54 68.60 2.03 43.67 16 9 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 10 H -0.29 -12.32 7.11 99.48 0.71 -11.61 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 12 N -0.71 -29.06 5.07 -461.41 -2.34 -31.40 16 13 C 0.69 28.25 8.37 179.06 1.50 29.75 16 14 O -0.63 -32.06 13.43 -3.99 -0.05 -32.11 16 15 N -0.67 -19.46 5.35 -316.98 -1.69 -21.15 16 16 C 0.17 5.17 6.30 38.13 0.24 5.41 16 17 C -0.11 -2.39 9.94 22.37 0.22 -2.17 16 18 C -0.06 -1.32 10.09 22.46 0.23 -1.10 16 19 C 0.03 0.88 7.23 39.27 0.28 1.17 16 20 N -0.55 -16.58 10.59 -306.40 -3.24 -19.83 16 21 C 0.48 13.94 8.38 179.30 1.50 15.44 16 22 N -0.58 -11.06 3.36 -871.94 -2.93 -13.99 16 23 C 0.11 1.22 10.52 127.77 1.34 2.56 16 24 C 0.09 1.15 10.50 127.77 1.34 2.49 16 25 O -0.25 -8.60 10.43 -14.50 -0.15 -8.75 16 26 C -0.01 -0.50 7.41 22.83 0.17 -0.33 16 27 C -0.11 -4.16 8.70 22.42 0.19 -3.97 16 28 H 0.07 3.76 6.07 -2.39 -0.01 3.75 16 29 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 31 H 0.27 14.48 8.31 -92.70 -0.77 13.71 16 32 H 0.41 13.31 8.56 -92.71 -0.79 12.52 16 33 H 0.43 8.37 8.84 -92.71 -0.82 7.55 16 34 H 0.18 2.26 8.06 -2.91 -0.02 2.24 16 35 H 0.17 2.75 8.06 -2.91 -0.02 2.73 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.07 1.02 7.60 -2.39 -0.02 1.00 16 38 H 0.11 0.49 7.92 -2.38 -0.02 0.47 16 39 H 0.13 0.60 7.79 -2.39 -0.02 0.59 16 40 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 42 H 0.12 5.12 6.21 -2.91 -0.02 5.10 16 Total: -1.00 -79.09 357.13 -0.20 -79.29 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.54 Total: 25.83 kcal Atomic # 6 Polarization: 22.52 SS G_CDS: 8.48 Total: 30.99 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -9.96 Total: -138.92 kcal Atomic # 8 Polarization: -40.66 SS G_CDS: -0.20 Total: -40.86 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.67 kcal Total: -79.09 -0.20 -79.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000119337886.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.417 kcal (2) G-P(sol) polarization free energy of solvation -79.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds