Wall clock time and date at job start Tue Mar 31 2020 14:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47134 * 2 1 4 4 C 1.35847 * 126.05375 * 125.00344 * 3 2 1 5 5 C 1.35726 * 107.56295 * 180.02562 * 4 3 2 6 6 N 1.40842 * 126.08012 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00544 * 179.97438 * 6 5 4 8 8 O 1.21605 * 119.99882 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00155 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00377 * 0.02562 * 9 7 6 11 11 C 1.50704 * 109.47158 * 270.00187 * 10 9 7 12 12 H 1.08004 * 120.00008 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00004 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00307 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00235 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46674 * 60.00066 * 15 13 11 17 17 H 1.48497 * 109.47212 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46802 * 300.00442 * 15 13 11 19 19 C 1.46506 * 119.99868 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47289 * 89.99907 * 19 9 7 21 21 C 1.34508 * 125.78448 * 90.00098 * 20 19 9 22 22 C 1.41394 * 106.83701 * 179.97438 * 21 20 19 23 23 C 1.34513 * 106.83758 * 359.97438 * 22 21 20 24 24 O 1.34295 * 125.78633 * 269.69055 * 20 19 9 25 25 C 1.40235 * 107.84747 * 0.23934 * 5 4 3 26 26 N 1.30836 * 108.34402 * 359.59305 * 25 5 4 27 27 H 1.09001 * 109.46991 * 59.99278 * 1 2 3 28 28 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46670 * 299.99366 * 1 2 3 30 30 H 1.09002 * 109.47189 * 240.00551 * 2 1 3 31 31 H 1.08994 * 109.47170 * 120.00365 * 2 1 3 32 32 H 1.07997 * 126.21954 * 0.04044 * 4 3 2 33 33 H 0.97004 * 119.99841 * 359.97438 * 6 5 4 34 34 H 1.08997 * 109.46694 * 29.99578 * 10 9 7 35 35 H 1.08995 * 109.47258 * 149.99854 * 10 9 7 36 36 H 0.96996 * 120.00505 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47060 * 210.00357 * 19 9 7 38 38 H 1.09004 * 109.47073 * 329.99846 * 19 9 7 39 39 H 1.08001 * 126.58556 * 359.96469 * 21 20 19 40 40 H 1.07997 * 126.57684 * 179.97438 * 22 21 20 41 41 H 1.07998 * 125.78636 * 180.02562 * 23 22 21 42 42 H 1.08006 * 125.83238 * 179.73491 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8788 1.9250 0.8996 5 6 3.0746 3.2211 0.5474 6 7 3.8982 4.1471 1.2165 7 6 4.0038 5.4099 0.7576 8 8 3.3875 5.7499 -0.2341 9 7 4.7922 6.2959 1.3977 10 6 5.5351 5.8862 2.5921 11 6 4.6926 6.1332 3.8169 12 1 3.7029 6.5537 3.7158 13 6 5.1851 5.8223 5.0666 14 7 6.3900 5.3099 5.1897 15 14 4.1411 6.1291 6.5850 16 1 2.8848 5.3431 6.4888 17 1 4.8941 5.7137 7.7956 18 1 3.8147 7.5748 6.6774 19 6 4.9065 7.6687 0.8991 20 6 3.8485 8.5270 1.5434 21 6 3.9842 9.2128 2.6924 22 6 2.7561 9.8748 2.9219 23 6 1.9436 9.5541 1.8989 24 8 2.6122 8.7413 1.0646 25 6 2.3064 3.4760 -0.5978 26 7 1.6804 2.3753 -0.9271 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.3260 1.4181 1.7419 33 1 4.3895 3.8761 2.0078 34 1 5.7753 4.8252 2.5243 35 1 6.4568 6.4638 2.6626 36 1 6.7365 5.0908 6.0688 37 1 5.8928 8.0631 1.1435 38 1 4.7705 7.6750 -0.1824 39 1 4.8627 9.2506 3.3196 40 1 2.5164 10.5149 3.7580 41 1 0.9273 9.8956 1.7686 42 1 2.2441 4.4192 -1.1204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172119055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:06 Heat of formation + Delta-G solvation = 79.357347 kcal Electronic energy + Delta-G solvation = -26822.049319 eV Core-core repulsion = 22999.604537 eV Total energy + Delta-G solvation = -3822.444782 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.92076 -40.94984 -39.25919 -35.44495 -34.62626 -33.51279 -32.68282 -32.31492 -30.23651 -29.90104 -27.96004 -27.37436 -25.13255 -23.67804 -23.04717 -21.15007 -21.10490 -20.79790 -19.94088 -18.88192 -17.35961 -17.04271 -16.80514 -16.53028 -15.75060 -15.36120 -15.28083 -14.72550 -14.55764 -14.31898 -14.08033 -13.70208 -13.58464 -13.12578 -12.61543 -12.42978 -12.35727 -12.34999 -12.20603 -12.14420 -12.10884 -11.58700 -11.50531 -11.20457 -11.00942 -10.80829 -10.42296 -10.29388 -10.17764 -9.83825 -9.36270 -9.26176 -9.06653 -8.61033 -8.08719 -7.80201 -7.14520 -6.22158 -4.28309 2.10799 2.24960 2.65199 3.09210 3.16349 3.22826 3.27227 3.32438 3.54706 3.63074 4.10767 4.30963 4.56998 4.75832 4.89457 5.04903 5.11340 5.13475 5.27827 5.42700 5.48965 5.51390 5.60748 5.68410 5.82235 5.91473 5.98369 6.01093 6.08180 6.37773 6.54622 6.59184 6.65887 6.75500 7.01860 7.10895 7.20732 7.30843 7.44173 7.67201 7.75140 7.79012 7.99533 8.03456 8.56159 8.83718 9.25469 9.40801 10.84184 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010720 B = 0.004556 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.213969 B = 6143.827615 C = 7534.442300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.141 3.859 3 N -0.380 5.380 4 C -0.002 4.002 5 C 0.042 3.958 6 N -0.654 5.654 7 C 0.715 3.285 8 O -0.602 6.602 9 N -0.609 5.609 10 C 0.238 3.762 11 C -0.530 4.530 12 H 0.063 0.937 13 C 0.067 3.933 14 N -0.893 5.893 15 Si 0.893 3.107 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.275 1.275 19 C 0.219 3.781 20 C -0.017 4.017 21 C -0.180 4.180 22 C -0.218 4.218 23 C -0.056 4.056 24 O -0.168 6.168 25 C 0.050 3.950 26 N -0.293 5.293 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.173 0.827 33 H 0.417 0.583 34 H 0.033 0.967 35 H 0.041 0.959 36 H 0.265 0.735 37 H 0.105 0.895 38 H 0.089 0.911 39 H 0.148 0.852 40 H 0.139 0.861 41 H 0.192 0.808 42 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.023 -3.900 -6.169 8.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.019 3.981 3 N -0.168 5.168 4 C -0.149 4.149 5 C -0.064 4.064 6 N -0.303 5.303 7 C 0.417 3.583 8 O -0.482 6.482 9 N -0.342 5.342 10 C 0.119 3.881 11 C -0.569 4.569 12 H 0.082 0.918 13 C -0.136 4.136 14 N -0.532 5.532 15 Si 0.721 3.279 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.200 1.200 19 C 0.095 3.905 20 C -0.069 4.069 21 C -0.200 4.200 22 C -0.237 4.237 23 C -0.125 4.125 24 O -0.063 6.063 25 C -0.137 4.137 26 N -0.115 5.115 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.190 0.810 33 H 0.256 0.744 34 H 0.050 0.950 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.123 0.877 38 H 0.108 0.892 39 H 0.166 0.834 40 H 0.157 0.843 41 H 0.209 0.791 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -6.188 -4.499 -7.779 10.911 hybrid contribution 0.257 0.502 2.696 2.754 sum -5.931 -3.997 -5.083 8.774 Atomic orbital electron populations 1.22067 0.94235 1.02396 1.03651 1.21514 0.95638 0.77660 1.03264 1.48290 1.36835 1.09883 1.21753 1.21776 1.00448 0.93881 0.98800 1.17590 1.01436 0.89420 0.97963 1.42129 1.47926 1.08768 1.31495 1.15662 0.79953 0.80230 0.82473 1.90708 1.50538 1.78589 1.28367 1.47405 1.47684 1.08536 1.30607 1.19426 0.91992 0.95964 0.80766 1.21486 1.02192 1.42688 0.90551 0.91839 1.24890 0.94935 0.94804 0.98938 1.69902 1.16076 1.42854 1.24373 0.86624 0.80309 0.79045 0.81970 1.20295 1.21290 1.20006 1.19519 0.93499 0.79252 0.98260 1.22988 0.85307 1.01539 0.97051 1.21569 0.99858 1.01010 0.97563 1.21770 0.95035 1.05850 1.01060 1.23847 0.98483 0.97803 0.92337 1.84067 1.23695 1.53191 1.45367 1.24544 0.95150 0.97976 0.96061 1.77241 1.23759 0.96632 1.13893 0.91160 0.91076 0.92083 0.90285 0.88980 0.80964 0.74397 0.94973 0.94088 0.92513 0.87723 0.89242 0.83428 0.84305 0.79093 0.77731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.51 10.10 37.16 0.38 -1.14 16 2 C 0.14 1.37 7.24 -4.04 -0.03 1.34 16 3 N -0.38 -5.50 3.70 -61.02 -0.23 -5.73 16 4 C 0.00 -0.04 11.52 -16.67 -0.19 -0.23 16 5 C 0.04 0.76 6.90 -83.86 -0.58 0.18 16 6 N -0.65 -12.68 5.34 -14.39 -0.08 -12.76 16 7 C 0.71 15.09 8.25 -86.92 -0.72 14.37 16 8 O -0.60 -13.47 13.08 5.27 0.07 -13.41 16 9 N -0.61 -12.38 2.44 -182.18 -0.44 -12.83 16 10 C 0.24 5.27 4.97 -5.19 -0.03 5.24 16 11 C -0.53 -13.08 9.14 -34.44 -0.31 -13.39 16 12 H 0.06 1.68 7.65 -52.48 -0.40 1.28 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -23.40 13.29 55.43 0.74 -22.66 16 15 Si 0.89 20.38 29.54 -169.99 -5.02 15.36 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 18 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 19 C 0.22 3.96 5.98 -5.19 -0.03 3.93 16 20 C -0.02 -0.33 6.90 -35.63 -0.25 -0.58 16 21 C -0.18 -3.38 10.40 -39.70 -0.41 -3.79 16 22 C -0.22 -3.71 10.91 -39.70 -0.43 -4.14 16 23 C -0.06 -0.93 12.09 29.42 0.36 -0.57 16 24 O -0.17 -3.29 10.65 5.72 0.06 -3.23 16 25 C 0.05 0.94 10.84 -17.23 -0.19 0.75 16 26 N -0.29 -5.06 12.41 30.70 0.38 -4.68 16 27 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 0.67 8.07 -51.93 -0.42 0.25 16 32 H 0.17 2.06 8.06 -52.49 -0.42 1.64 16 33 H 0.42 7.96 6.56 -40.82 -0.27 7.69 16 34 H 0.03 0.73 6.36 -51.93 -0.33 0.40 16 35 H 0.04 0.94 7.89 -51.93 -0.41 0.53 16 36 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 37 H 0.10 1.63 7.89 -51.93 -0.41 1.22 16 38 H 0.09 1.56 7.42 -51.93 -0.39 1.17 16 39 H 0.15 2.76 8.06 -52.49 -0.42 2.33 16 40 H 0.14 2.03 8.06 -52.49 -0.42 1.60 16 41 H 0.19 2.34 8.06 -52.49 -0.42 1.92 16 42 H 0.21 4.05 5.91 -52.48 -0.31 3.74 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -30.90 363.33 -7.03 -37.93 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.45 Total: 12.95 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -2.53 Total: 3.58 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: 0.37 Total: -58.66 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: 0.13 Total: -16.63 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.90 -7.03 -37.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172119055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.289 kcal (2) G-P(sol) polarization free energy of solvation -30.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.357 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds