Wall clock time and date at job start Tue Mar 31 2020 14:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47134 * 2 1 4 4 C 1.35847 * 126.05375 * 125.00344 * 3 2 1 5 5 C 1.35726 * 107.56295 * 180.02562 * 4 3 2 6 6 N 1.40842 * 126.08012 * 179.97438 * 5 4 3 7 7 C 1.34774 * 120.00544 * 179.97438 * 6 5 4 8 8 O 1.21605 * 119.99882 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00155 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00377 * 0.02562 * 9 7 6 11 11 C 1.50704 * 109.47158 * 270.00187 * 10 9 7 12 12 H 1.08004 * 120.00008 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00004 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00307 * 359.97438 * 13 11 10 15 15 Si 1.86805 * 120.00235 * 179.97438 * 13 11 10 16 16 H 1.48500 * 109.46674 * 60.00066 * 15 13 11 17 17 H 1.48497 * 109.47212 * 180.02562 * 15 13 11 18 18 H 1.48495 * 109.46802 * 300.00442 * 15 13 11 19 19 C 1.46506 * 119.99868 * 180.02562 * 9 7 6 20 20 C 1.50703 * 109.47289 * 89.99907 * 19 9 7 21 21 C 1.34508 * 125.78448 * 90.00098 * 20 19 9 22 22 C 1.41394 * 106.83701 * 179.97438 * 21 20 19 23 23 C 1.34513 * 106.83758 * 359.97438 * 22 21 20 24 24 O 1.34295 * 125.78633 * 269.69055 * 20 19 9 25 25 C 1.40235 * 107.84747 * 0.23934 * 5 4 3 26 26 N 1.30836 * 108.34402 * 359.59305 * 25 5 4 27 27 H 1.09001 * 109.46991 * 59.99278 * 1 2 3 28 28 H 1.08997 * 109.47247 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46670 * 299.99366 * 1 2 3 30 30 H 1.09002 * 109.47189 * 240.00551 * 2 1 3 31 31 H 1.08994 * 109.47170 * 120.00365 * 2 1 3 32 32 H 1.07997 * 126.21954 * 0.04044 * 4 3 2 33 33 H 0.97004 * 119.99841 * 359.97438 * 6 5 4 34 34 H 1.08997 * 109.46694 * 29.99578 * 10 9 7 35 35 H 1.08995 * 109.47258 * 149.99854 * 10 9 7 36 36 H 0.96996 * 120.00505 * 180.02562 * 14 13 11 37 37 H 1.09001 * 109.47060 * 210.00357 * 19 9 7 38 38 H 1.09004 * 109.47073 * 329.99846 * 19 9 7 39 39 H 1.08001 * 126.58556 * 359.96469 * 21 20 19 40 40 H 1.07997 * 126.57684 * 179.97438 * 22 21 20 41 41 H 1.07998 * 125.78636 * 180.02562 * 23 22 21 42 42 H 1.08006 * 125.83238 * 179.73491 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.8788 1.9250 0.8996 5 6 3.0746 3.2211 0.5474 6 7 3.8982 4.1471 1.2165 7 6 4.0038 5.4099 0.7576 8 8 3.3875 5.7499 -0.2341 9 7 4.7922 6.2959 1.3977 10 6 5.5351 5.8862 2.5921 11 6 4.6926 6.1332 3.8169 12 1 3.7029 6.5537 3.7158 13 6 5.1851 5.8223 5.0666 14 7 6.3900 5.3099 5.1897 15 14 4.1411 6.1291 6.5850 16 1 2.8848 5.3431 6.4888 17 1 4.8941 5.7137 7.7956 18 1 3.8147 7.5748 6.6774 19 6 4.9065 7.6687 0.8991 20 6 3.8485 8.5270 1.5434 21 6 3.9842 9.2128 2.6924 22 6 2.7561 9.8748 2.9219 23 6 1.9436 9.5541 1.8989 24 8 2.6122 8.7413 1.0646 25 6 2.3064 3.4760 -0.5978 26 7 1.6804 2.3753 -0.9271 27 1 -0.3633 0.5140 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 3.3260 1.4181 1.7419 33 1 4.3895 3.8761 2.0078 34 1 5.7753 4.8252 2.5243 35 1 6.4568 6.4638 2.6626 36 1 6.7365 5.0908 6.0688 37 1 5.8928 8.0631 1.1435 38 1 4.7705 7.6750 -0.1824 39 1 4.8627 9.2506 3.3196 40 1 2.5164 10.5149 3.7580 41 1 0.9273 9.8956 1.7686 42 1 2.2441 4.4192 -1.1204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172119055.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:06 Heat of formation + Delta-G solvation = 61.289075 kcal Electronic energy + Delta-G solvation = -26822.832818 eV Core-core repulsion = 22999.604537 eV Total energy + Delta-G solvation = -3823.228281 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.32947 -42.26121 -40.79819 -37.01070 -36.00274 -34.70454 -34.54805 -33.73297 -31.67511 -31.06718 -29.36364 -29.01761 -26.57364 -24.94229 -24.61716 -22.55036 -22.51065 -22.00491 -21.32109 -20.33165 -18.85642 -18.70956 -18.25020 -18.02951 -17.18750 -16.68062 -16.55036 -16.44407 -16.04735 -15.70672 -15.42889 -15.04594 -14.78164 -14.56233 -14.21330 -13.96930 -13.73508 -13.61120 -13.51674 -13.38093 -13.31305 -12.92573 -12.91264 -12.67605 -12.52911 -12.34603 -12.09336 -11.74851 -11.66880 -11.57246 -11.02984 -10.68414 -10.54747 -10.29081 -9.70556 -9.25410 -8.53194 -8.15313 -6.26407 0.83173 0.87392 1.40861 1.43767 1.49356 1.52426 1.66194 1.78259 2.12168 2.26132 2.41707 2.58845 3.14559 3.18419 3.71129 3.95694 3.99475 4.14879 4.17694 4.25542 4.27949 4.42333 4.45263 4.59874 4.60893 4.65291 4.84894 4.86906 4.97656 5.03008 5.15088 5.19252 5.23966 5.32592 5.33686 5.62235 5.74550 5.80735 5.93630 6.07855 6.11736 6.19195 6.39027 6.69575 6.77570 7.07113 7.43828 7.67544 8.88900 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010720 B = 0.004556 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2611.213969 B = 6143.827615 C = 7534.442300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 N -0.368 5.368 4 C 0.023 3.977 5 C 0.002 3.998 6 N -0.650 5.650 7 C 0.706 3.294 8 O -0.620 6.620 9 N -0.608 5.608 10 C 0.252 3.748 11 C -0.525 4.525 12 H 0.043 0.957 13 C 0.033 3.967 14 N -0.915 5.915 15 Si 0.940 3.060 16 H -0.281 1.281 17 H -0.282 1.282 18 H -0.276 1.276 19 C 0.215 3.785 20 C -0.037 4.037 21 C -0.190 4.190 22 C -0.230 4.230 23 C -0.051 4.051 24 O -0.191 6.191 25 C 0.030 3.970 26 N -0.308 5.308 27 H 0.049 0.951 28 H 0.104 0.896 29 H 0.048 0.952 30 H 0.095 0.905 31 H 0.128 0.872 32 H 0.210 0.790 33 H 0.417 0.583 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.267 0.733 37 H 0.126 0.874 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.163 0.837 41 H 0.233 0.767 42 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.817 -5.260 -5.193 9.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.007 3.993 3 N -0.155 5.155 4 C -0.126 4.126 5 C -0.103 4.103 6 N -0.299 5.299 7 C 0.408 3.592 8 O -0.502 6.502 9 N -0.342 5.342 10 C 0.132 3.868 11 C -0.564 4.564 12 H 0.062 0.938 13 C -0.167 4.167 14 N -0.554 5.554 15 Si 0.767 3.233 16 H -0.207 1.207 17 H -0.207 1.207 18 H -0.202 1.202 19 C 0.091 3.909 20 C -0.088 4.088 21 C -0.210 4.210 22 C -0.249 4.249 23 C -0.119 4.119 24 O -0.087 6.087 25 C -0.156 4.156 26 N -0.132 5.132 27 H 0.068 0.932 28 H 0.122 0.878 29 H 0.067 0.933 30 H 0.114 0.886 31 H 0.146 0.854 32 H 0.227 0.773 33 H 0.256 0.744 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.144 0.856 38 H 0.110 0.890 39 H 0.161 0.839 40 H 0.181 0.819 41 H 0.249 0.751 42 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.001 -5.880 -6.821 11.407 hybrid contribution 0.419 0.829 2.366 2.541 sum -6.582 -5.051 -4.456 9.417 Atomic orbital electron populations 1.22039 0.93781 1.04046 1.02003 1.22074 0.96074 0.75262 1.05856 1.48827 1.35487 1.10882 1.20304 1.22326 0.98771 0.92733 0.98738 1.17864 1.02961 0.90663 0.98856 1.42021 1.48038 1.08462 1.31403 1.15870 0.80016 0.80852 0.82482 1.90698 1.51287 1.79063 1.29177 1.47382 1.47429 1.09363 1.30027 1.19143 0.91397 0.95650 0.80651 1.21475 1.01389 1.41976 0.91569 0.93843 1.25372 0.95698 0.94872 1.00792 1.69960 1.16946 1.43704 1.24828 0.85889 0.78985 0.78574 0.79866 1.20653 1.20721 1.20182 1.19728 0.94527 0.78275 0.98333 1.23110 0.85652 1.02433 0.97647 1.21706 1.00578 1.01357 0.97407 1.22099 0.94361 1.06272 1.02151 1.24688 0.99731 0.96142 0.91292 1.84060 1.24064 1.54119 1.46493 1.24263 0.96478 0.97987 0.96860 1.77185 1.24043 0.96969 1.14971 0.93212 0.87781 0.93281 0.88645 0.85438 0.77325 0.74405 0.95185 0.94719 0.92428 0.85594 0.89049 0.83882 0.81922 0.75104 0.79797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.54 10.10 71.98 0.73 -1.81 16 2 C 0.13 2.03 7.24 86.38 0.63 2.66 16 3 N -0.37 -9.92 3.70 -346.98 -1.29 -11.21 16 4 C 0.02 0.64 11.52 83.49 0.96 1.60 16 5 C 0.00 0.06 6.90 37.59 0.26 0.32 16 6 N -0.65 -25.47 5.34 -317.71 -1.70 -27.17 16 7 C 0.71 30.52 8.25 179.06 1.48 32.00 16 8 O -0.62 -28.82 13.08 -4.05 -0.05 -28.87 16 9 N -0.61 -25.18 2.44 -848.54 -2.07 -27.25 16 10 C 0.25 11.23 4.97 85.63 0.43 11.65 16 11 C -0.53 -25.89 9.14 25.60 0.23 -25.66 16 12 H 0.04 2.31 7.65 -2.91 -0.02 2.29 16 13 C 0.03 1.66 5.46 84.65 0.46 2.13 16 14 N -0.91 -47.37 13.29 21.44 0.28 -47.08 16 15 Si 0.94 41.20 29.54 68.60 2.03 43.23 16 16 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 17 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 C 0.21 7.91 5.98 85.63 0.51 8.42 16 20 C -0.04 -1.45 6.90 24.83 0.17 -1.28 16 21 C -0.19 -7.14 10.40 22.19 0.23 -6.91 16 22 C -0.23 -7.55 10.91 22.19 0.24 -7.30 16 23 C -0.05 -1.62 12.09 66.97 0.81 -0.81 16 24 O -0.19 -7.50 10.65 -2.46 -0.03 -7.52 16 25 C 0.03 1.16 10.84 85.33 0.92 2.09 16 26 N -0.31 -10.60 12.41 -56.78 -0.70 -11.31 16 27 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 30 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.13 1.22 8.07 -2.39 -0.02 1.20 16 32 H 0.21 4.20 8.06 -2.91 -0.02 4.17 16 33 H 0.42 15.92 6.56 -92.71 -0.61 15.31 16 34 H 0.03 1.36 6.36 -2.39 -0.02 1.35 16 35 H 0.03 1.59 7.89 -2.39 -0.02 1.57 16 36 H 0.27 13.28 8.31 -92.71 -0.77 12.51 16 37 H 0.13 3.95 7.89 -2.39 -0.02 3.93 16 38 H 0.09 3.28 7.42 -2.38 -0.02 3.26 16 39 H 0.14 5.39 8.06 -2.91 -0.02 5.37 16 40 H 0.16 4.41 8.06 -2.91 -0.02 4.39 16 41 H 0.23 5.03 8.06 -2.91 -0.02 5.01 16 42 H 0.19 7.74 5.91 -2.91 -0.02 7.72 16 Total: -1.00 -67.30 363.33 4.98 -62.32 By element: Atomic # 1 Polarization: 37.31 SS G_CDS: 0.44 Total: 37.76 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 8.06 Total: 17.11 kcal Atomic # 7 Polarization: -118.55 SS G_CDS: -5.47 Total: -124.02 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.08 Total: -36.40 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -67.30 4.98 -62.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172119055.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.614 kcal (2) G-P(sol) polarization free energy of solvation -67.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds