Wall clock time and date at job start Tue Mar 31 2020 13:55:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.47077 * 2 1 4 4 C 1.50705 * 109.47111 * 119.99662 * 2 1 3 5 5 C 1.34519 * 125.78853 * 260.00355 * 4 2 1 6 6 C 1.41383 * 106.83528 * 179.97438 * 5 4 2 7 7 C 1.34505 * 106.84734 * 359.97438 * 6 5 4 8 8 O 1.34303 * 108.41914 * 359.73741 * 7 6 5 9 9 N 1.46501 * 109.47256 * 239.99277 * 2 1 3 10 10 C 1.46501 * 120.00021 * 300.00360 * 9 2 1 11 11 C 1.34777 * 119.99677 * 119.99965 * 9 2 1 12 12 O 1.21586 * 120.00074 * 0.02562 * 11 9 2 13 13 N 1.34777 * 119.99732 * 180.02562 * 11 9 2 14 14 C 1.40198 * 119.99611 * 180.02562 * 13 11 9 15 15 C 1.40395 * 125.97441 * 359.97438 * 14 13 11 16 16 C 1.35243 * 107.86535 * 179.76148 * 15 14 13 17 17 N 1.34960 * 107.86064 * 0.42509 * 16 15 14 18 18 C 1.46500 * 125.97985 * 179.83521 * 17 16 15 19 19 C 1.50706 * 109.47299 * 124.71356 * 18 17 16 20 20 H 1.07998 * 119.99503 * 0.02562 * 19 18 17 21 21 C 1.37871 * 120.00434 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99826 * 359.72891 * 21 19 18 23 23 Si 1.86800 * 120.00406 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47364 * 179.72558 * 23 21 19 25 25 H 1.48508 * 109.46883 * 299.72681 * 23 21 19 26 26 H 1.48497 * 109.46870 * 59.72491 * 23 21 19 27 27 N 1.31213 * 125.96940 * 180.02562 * 14 13 11 28 28 H 1.09002 * 109.47448 * 60.00572 * 1 2 3 29 29 H 1.09005 * 109.47445 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47341 * 300.00723 * 1 2 3 31 31 H 1.07995 * 126.57911 * 359.95658 * 5 4 2 32 32 H 1.08002 * 126.57300 * 180.02562 * 6 5 4 33 33 H 1.07998 * 125.79129 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.46952 * 269.99510 * 10 9 2 35 35 H 1.09004 * 109.46945 * 29.99954 * 10 9 2 36 36 H 1.09002 * 109.46908 * 149.99445 * 10 9 2 37 37 H 0.96996 * 119.99913 * 359.97438 * 13 11 9 38 38 H 1.07994 * 126.06763 * 0.02745 * 15 14 13 39 39 H 1.08007 * 126.06985 * 180.26350 * 16 15 14 40 40 H 1.09004 * 109.47078 * 4.72118 * 18 17 16 41 41 H 1.08993 * 109.47364 * 244.71890 * 18 17 16 42 42 H 0.97000 * 120.00236 * 0.27947 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.4731 -0.1189 2.3554 6 6 2.8431 -1.1541 3.2444 7 6 2.6058 -2.3162 2.6100 8 8 2.1090 -2.0414 1.3928 9 7 2.0183 -0.6908 -1.1961 10 6 1.6644 -2.0934 -1.4278 11 6 2.7932 -0.0358 -2.0833 12 8 3.0872 1.1282 -1.8907 13 7 3.2420 -0.6711 -3.1839 14 6 4.0485 0.0101 -4.1065 15 6 4.4628 1.3480 -4.0097 16 6 5.2289 1.6242 -5.0895 17 7 5.2917 0.5100 -5.8484 18 6 6.0167 0.3702 -7.1137 19 6 6.9730 -0.7908 -7.0192 20 1 7.0342 -1.3671 -6.1079 21 6 7.7697 -1.1172 -8.0961 22 7 7.6913 -0.4187 -9.2077 23 14 8.9545 -2.5567 -7.9792 24 1 9.6852 -2.7020 -9.2638 25 1 9.9253 -2.3109 -6.8825 26 1 8.1949 -3.8013 -7.6981 27 7 4.5472 -0.4912 -5.2118 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 2.5331 0.9429 2.5433 32 1 3.2394 -1.0347 4.2420 33 1 2.7803 -3.3029 3.0128 34 1 2.4157 -2.7378 -0.9714 35 1 0.6903 -2.3003 -0.9844 36 1 1.6237 -2.2854 -2.5000 37 1 3.0077 -1.5998 -3.3373 38 1 4.2173 2.0335 -3.2122 39 1 5.7036 2.5696 -5.3074 40 1 6.5745 1.2846 -7.3159 41 1 5.3070 0.1915 -7.9214 42 1 7.0760 0.3286 -9.2685 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173333841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:54 Heat of formation + Delta-G solvation = 62.316203 kcal Electronic energy + Delta-G solvation = -25980.896808 eV Core-core repulsion = 22157.713067 eV Total energy + Delta-G solvation = -3823.183741 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.53099 -42.36409 -41.17614 -37.58950 -36.44382 -35.64612 -34.08302 -33.21939 -32.08877 -30.99936 -29.44415 -28.31338 -27.90778 -25.40992 -24.54458 -22.88788 -22.69777 -22.17003 -21.19139 -20.56932 -19.31381 -19.15097 -18.46833 -18.05682 -17.23682 -17.13087 -16.78235 -16.43796 -15.92284 -15.68106 -15.60046 -15.00849 -14.92479 -14.59432 -14.27902 -14.05892 -13.97995 -13.75116 -13.74042 -13.56440 -13.33316 -13.24988 -13.18480 -12.81346 -12.61295 -12.33867 -12.05925 -11.95369 -11.70183 -11.16280 -11.01001 -10.84025 -10.69310 -10.03913 -9.80991 -9.42261 -9.16342 -8.77015 -6.55641 0.68638 0.96237 1.05939 1.50884 1.57235 1.57921 1.69226 1.79021 1.91585 2.07751 2.32020 2.48500 2.76025 3.01355 3.55588 3.84078 4.00274 4.06815 4.09972 4.13371 4.20565 4.31505 4.51165 4.56720 4.63140 4.67703 4.76530 4.77307 4.80914 4.85145 4.93985 4.98864 5.05681 5.14969 5.24534 5.37621 5.50479 5.58941 5.68085 5.82503 5.93715 6.20405 6.27247 6.41556 6.48658 6.99242 7.20046 7.25537 8.58611 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.020072 B = 0.002606 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.675908 B =10742.162894 C =11406.675108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.237 3.763 3 H 0.117 0.883 4 C -0.037 4.037 5 C -0.212 4.212 6 C -0.229 4.229 7 C -0.041 4.041 8 O -0.178 6.178 9 N -0.614 5.614 10 C 0.070 3.930 11 C 0.715 3.285 12 O -0.595 6.595 13 N -0.635 5.635 14 C 0.285 3.715 15 C -0.289 4.289 16 C 0.056 3.944 17 N -0.344 5.344 18 C 0.260 3.740 19 C -0.622 4.622 20 H 0.044 0.956 21 C -0.019 4.019 22 N -0.923 5.923 23 Si 1.120 2.880 24 H -0.275 1.275 25 H -0.272 1.272 26 H -0.275 1.275 27 N -0.346 5.346 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.156 0.844 32 H 0.165 0.835 33 H 0.235 0.765 34 H 0.063 0.937 35 H 0.102 0.898 36 H 0.078 0.922 37 H 0.419 0.581 38 H 0.170 0.830 39 H 0.203 0.797 40 H 0.054 0.946 41 H 0.017 0.983 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.438 -2.498 24.188 28.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.133 3.867 3 H 0.135 0.865 4 C -0.088 4.088 5 C -0.232 4.232 6 C -0.248 4.248 7 C -0.108 4.108 8 O -0.074 6.074 9 N -0.351 5.351 10 C -0.072 4.072 11 C 0.416 3.584 12 O -0.473 6.473 13 N -0.288 5.288 14 C 0.029 3.971 15 C -0.320 4.320 16 C -0.092 4.092 17 N -0.126 5.126 18 C 0.141 3.859 19 C -0.660 4.660 20 H 0.063 0.937 21 C -0.218 4.218 22 N -0.559 5.559 23 Si 0.940 3.060 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.200 1.200 27 N -0.177 5.177 28 H 0.090 0.910 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.173 0.827 32 H 0.183 0.817 33 H 0.251 0.749 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.096 0.904 37 H 0.258 0.742 38 H 0.187 0.813 39 H 0.219 0.781 40 H 0.072 0.928 41 H 0.035 0.965 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -14.087 -3.771 22.419 26.744 hybrid contribution -1.108 1.345 1.227 2.131 sum -15.195 -2.426 23.646 28.211 Atomic orbital electron populations 1.22160 0.90904 1.03970 1.04031 1.19600 0.95746 0.95118 0.76241 0.86536 1.22809 1.06368 0.81227 0.98396 1.21901 1.05390 1.01635 0.94292 1.22149 1.07747 0.92132 1.02751 1.24796 1.01224 1.01849 0.82971 1.84028 1.65084 1.24195 1.34093 1.47067 1.52062 1.13773 1.22179 1.22033 1.03249 0.79431 1.02500 1.15682 0.78925 0.84350 0.79454 1.90814 1.62975 1.16430 1.77104 1.41544 1.51164 1.15645 1.20456 1.19099 0.95171 0.92180 0.90608 1.21704 1.10154 0.96411 1.03723 1.23174 1.00087 0.93684 0.92217 1.48563 1.37835 1.06972 1.19230 1.19420 0.90190 0.98737 0.77590 1.22292 1.24354 1.16528 1.02818 0.93713 1.27272 0.99782 1.03632 0.91150 1.70945 1.37498 1.19706 1.27765 0.82885 0.74193 0.72240 0.76648 1.19938 1.19702 1.20033 1.77258 1.16659 1.14546 1.09267 0.91049 0.90721 0.89220 0.82673 0.81711 0.74885 0.91844 0.87958 0.90370 0.74202 0.81316 0.78063 0.92778 0.96502 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.15 71.98 0.66 -1.28 16 2 C 0.24 4.46 3.11 44.24 0.14 4.60 16 3 H 0.12 2.56 6.89 -2.39 -0.02 2.55 16 4 C -0.04 -0.70 6.07 24.84 0.15 -0.55 16 5 C -0.21 -3.88 10.80 22.19 0.24 -3.64 16 6 C -0.23 -3.51 10.91 22.19 0.24 -3.27 16 7 C -0.04 -0.57 12.09 66.96 0.81 0.24 16 8 O -0.18 -3.16 8.91 -2.51 -0.02 -3.18 16 9 N -0.61 -13.33 2.75 -844.84 -2.33 -15.65 16 10 C 0.07 1.06 8.77 127.77 1.12 2.18 16 11 C 0.71 21.67 8.25 179.05 1.48 23.15 16 12 O -0.60 -21.48 12.80 -3.99 -0.05 -21.53 16 13 N -0.64 -20.53 5.32 -321.23 -1.71 -22.23 16 14 C 0.29 11.80 8.11 133.31 1.08 12.88 16 15 C -0.29 -11.64 9.61 22.10 0.21 -11.42 16 16 C 0.06 2.27 11.44 83.52 0.96 3.23 16 17 N -0.34 -16.49 3.67 -351.84 -1.29 -17.78 16 18 C 0.26 13.53 5.57 85.64 0.48 14.01 16 19 C -0.62 -35.77 9.24 25.60 0.24 -35.53 16 20 H 0.04 2.69 7.81 -2.91 -0.02 2.67 16 21 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 22 N -0.92 -54.26 13.65 21.45 0.29 -53.97 16 23 Si 1.12 50.01 29.90 68.60 2.05 52.06 16 24 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 26 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 27 N -0.35 -16.54 12.42 -54.44 -0.68 -17.22 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.80 6.66 -2.38 -0.02 0.79 16 30 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 32 H 0.17 1.80 8.06 -2.91 -0.02 1.77 16 33 H 0.23 1.32 8.06 -2.91 -0.02 1.29 16 34 H 0.06 1.00 7.58 -2.39 -0.02 0.98 16 35 H 0.10 1.11 6.43 -2.38 -0.02 1.09 16 36 H 0.08 1.07 6.36 -2.39 -0.02 1.06 16 37 H 0.42 11.23 6.55 -92.71 -0.61 10.62 16 38 H 0.17 6.60 5.91 -2.91 -0.02 6.58 16 39 H 0.20 6.37 8.06 -2.91 -0.02 6.34 16 40 H 0.05 2.70 7.94 -2.39 -0.02 2.68 16 41 H 0.02 0.93 8.00 -2.39 -0.02 0.91 16 42 H 0.26 15.16 7.22 -92.71 -0.67 14.49 16 Total: -1.00 -75.48 355.19 5.08 -70.40 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.55 Total: 25.10 kcal Atomic # 6 Polarization: -4.26 SS G_CDS: 8.26 Total: 4.00 kcal Atomic # 7 Polarization: -121.15 SS G_CDS: -5.71 Total: -126.86 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.07 Total: -24.71 kcal Atomic # 14 Polarization: 50.01 SS G_CDS: 2.05 Total: 52.06 kcal Total: -75.48 5.08 -70.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173333841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.716 kcal (2) G-P(sol) polarization free energy of solvation -75.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds