Wall clock time and date at job start Tue Mar 31 2020 14:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47139 * 2 1 4 4 C 1.53007 * 109.47139 * 119.99686 * 2 1 3 5 5 C 1.47198 * 109.46990 * 185.00168 * 4 2 1 6 6 N 3.43550 * 154.82302 * 111.56418 * 2 1 3 7 7 N 1.46496 * 109.47491 * 239.99625 * 2 1 3 8 8 C 1.34775 * 119.99986 * 85.00087 * 7 2 1 9 9 O 1.21589 * 120.00064 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00006 * 180.02562 * 8 7 2 11 11 C 1.39594 * 119.99891 * 179.97438 * 10 8 7 12 12 N 1.32266 * 119.72727 * 0.26464 * 11 10 8 13 13 C 1.31963 * 121.69068 * 180.26509 * 12 11 10 14 14 C 1.38075 * 120.95403 * 359.72759 * 13 12 11 15 15 C 1.38794 * 119.35183 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47321 * 300.00263 * 1 2 3 30 30 H 1.09001 * 109.46892 * 60.00799 * 1 2 3 31 31 H 1.08998 * 109.46909 * 305.00179 * 4 2 1 32 32 H 1.08997 * 109.46832 * 64.99946 * 4 2 1 33 33 H 0.97000 * 120.00232 * 265.00129 * 7 2 1 34 34 H 0.97000 * 120.00212 * 359.97438 * 10 8 7 35 35 H 1.08000 * 119.52770 * 179.74706 * 13 12 11 36 36 H 1.07997 * 120.32417 * 179.97438 * 14 13 12 37 37 H 1.07993 * 120.77636 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 39 39 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 40 40 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 41 41 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 42 42 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5070 -0.6173 1.3113 6 7 4.6391 -0.5372 1.3592 7 7 2.0184 -0.6907 -1.1961 8 6 2.1472 -0.0184 -2.3570 9 8 1.8576 1.1612 -2.4119 10 7 2.5960 -0.6539 -3.4575 11 6 2.7289 0.0423 -4.6602 12 7 2.4177 1.3268 -4.7122 13 6 2.5237 2.0210 -5.8295 14 6 2.9720 1.4291 -6.9936 15 6 3.3158 0.0845 -6.9844 16 6 3.1955 -0.6206 -5.7951 17 8 3.5203 -1.9398 -5.7390 18 6 3.9831 -2.5459 -6.9476 19 6 4.2976 -4.0210 -6.6904 20 6 4.7850 -4.6603 -7.9651 21 1 4.8623 -4.0733 -8.8683 22 6 5.1312 -5.9948 -7.9784 23 7 5.5561 -6.5529 -9.0909 24 14 4.9968 -7.0103 -6.4163 25 1 3.6442 -7.6177 -6.3356 26 1 6.0216 -8.0847 -6.4345 27 1 5.2176 -6.1355 -5.2367 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2057 33 1 2.2491 -1.6318 -1.1525 34 1 2.8268 -1.5950 -3.4139 35 1 2.2561 3.0673 -5.8334 36 1 3.0544 2.0068 -7.9023 37 1 3.6695 -0.4016 -7.8816 38 1 4.8847 -2.0364 -7.2875 39 1 3.2107 -2.4668 -7.7126 40 1 5.0700 -4.0998 -5.9255 41 1 3.3961 -4.5308 -6.3503 42 1 5.8001 -7.4917 -9.1002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188708647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:58 Heat of formation + Delta-G solvation = 3.324072 kcal Electronic energy + Delta-G solvation = -25588.001977 eV Core-core repulsion = 21762.260145 eV Total energy + Delta-G solvation = -3825.741832 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.01840 -39.82756 -37.99533 -37.48835 -35.86093 -34.73410 -33.45608 -32.18818 -31.53229 -30.74896 -29.07920 -28.55596 -25.65530 -24.02997 -22.86975 -22.15749 -21.00092 -20.55090 -19.02506 -18.42407 -17.89504 -17.52771 -16.65248 -16.31931 -16.04163 -15.90976 -15.32650 -14.87730 -14.57864 -14.36694 -14.25498 -14.03159 -13.97885 -13.86079 -13.57172 -13.10355 -12.77517 -12.66485 -12.57306 -12.22871 -12.14209 -12.07942 -12.03255 -11.39857 -11.25863 -10.99964 -10.77520 -10.50135 -10.31944 -10.16761 -9.94907 -9.45962 -9.42384 -9.21429 -9.13176 -8.70941 -7.70559 -6.21594 -4.23338 1.22511 1.41647 2.27345 2.41651 2.48215 3.11875 3.20711 3.28818 3.31711 3.43089 3.53501 3.78619 4.00809 4.25390 4.30528 4.60650 4.62208 4.81162 4.92593 4.96557 5.03753 5.09331 5.12207 5.20525 5.31603 5.44089 5.56632 5.75735 5.78321 5.88204 6.00573 6.13616 6.20361 6.28278 6.36631 6.48057 6.70329 6.94361 7.10489 7.23378 7.48770 7.57614 7.67576 8.18231 8.29564 8.52745 8.78761 9.38043 10.90892 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.003334 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.246787 B = 8396.329392 C =10498.333566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.166 3.834 3 H 0.098 0.902 4 C -0.034 4.034 5 C 0.198 3.802 6 N -0.425 5.425 7 N -0.747 5.747 8 C 0.699 3.301 9 O -0.532 6.532 10 N -0.661 5.661 11 C 0.347 3.653 12 N -0.441 5.441 13 C 0.078 3.922 14 C -0.162 4.162 15 C -0.144 4.144 16 C 0.064 3.936 17 O -0.321 6.321 18 C 0.074 3.926 19 C -0.007 4.007 20 C -0.529 4.529 21 H 0.075 0.925 22 C 0.073 3.927 23 N -0.896 5.896 24 Si 0.881 3.119 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.264 1.264 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.127 0.873 32 H 0.115 0.885 33 H 0.397 0.603 34 H 0.419 0.581 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.027 0.973 41 H 0.023 0.977 42 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.658 13.067 17.062 24.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.060 3.940 3 H 0.116 0.884 4 C -0.074 4.074 5 C -0.120 4.120 6 N -0.102 5.102 7 N -0.404 5.404 8 C 0.399 3.601 9 O -0.403 6.403 10 N -0.311 5.311 11 C 0.113 3.887 12 N -0.156 5.156 13 C -0.079 4.079 14 C -0.183 4.183 15 C -0.171 4.171 16 C 0.012 3.988 17 O -0.234 6.234 18 C 0.000 4.000 19 C -0.045 4.045 20 C -0.567 4.567 21 H 0.093 0.907 22 C -0.130 4.130 23 N -0.534 5.534 24 Si 0.708 3.292 25 H -0.200 1.200 26 H -0.211 1.211 27 H -0.188 1.188 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.145 0.855 32 H 0.133 0.867 33 H 0.231 0.769 34 H 0.256 0.744 35 H 0.174 0.826 36 H 0.153 0.847 37 H 0.164 0.836 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.046 0.954 41 H 0.042 0.958 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.465 14.365 18.005 25.300 hybrid contribution 0.182 -2.069 -0.424 2.120 sum -10.284 12.296 17.581 23.792 Atomic orbital electron populations 1.22204 0.93739 1.02823 1.03490 1.20743 0.94662 0.97485 0.81135 0.88354 1.19701 0.82339 1.04755 1.00647 1.29058 0.95236 0.93927 0.93781 1.81283 1.12983 1.07972 1.07924 1.45265 1.72438 1.13840 1.08898 1.15897 0.78907 0.85337 0.79984 1.91035 1.53059 1.12986 1.83223 1.42475 1.67569 1.14116 1.06937 1.17465 0.98792 0.88827 0.83622 1.67620 1.15962 1.03802 1.28223 1.22430 0.98353 0.99843 0.87226 1.21905 1.01528 0.94830 1.00040 1.21617 1.02729 0.95284 0.97465 1.19494 0.99874 0.85887 0.93551 1.86043 1.79756 1.18516 1.39054 1.23135 0.97804 0.95853 0.83248 1.19579 0.97355 0.88632 0.98903 1.20814 1.45206 0.95605 0.95074 0.90708 1.24934 0.94152 0.97605 0.96273 1.69886 1.44026 1.12853 1.26604 0.86754 0.78229 0.80125 0.84115 1.20027 1.21133 1.18839 0.91890 0.91067 0.91068 0.85509 0.86654 0.76877 0.74385 0.82578 0.84698 0.83599 0.92331 0.92316 0.95421 0.95831 0.92356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.82 9.48 37.16 0.35 -0.46 16 2 C 0.17 1.01 2.55 -67.93 -0.17 0.84 16 3 H 0.10 0.81 7.57 -51.93 -0.39 0.42 16 4 C -0.03 -0.11 5.25 -29.52 -0.16 -0.26 16 5 C 0.20 1.62 15.14 -20.76 -0.31 1.31 16 6 N -0.43 -5.26 18.54 42.15 0.78 -4.48 16 7 N -0.75 -6.33 4.78 -58.68 -0.28 -6.61 16 8 C 0.70 9.29 8.50 -86.92 -0.74 8.55 16 9 O -0.53 -8.90 14.26 5.29 0.08 -8.83 16 10 N -0.66 -9.12 5.40 -15.67 -0.08 -9.20 16 11 C 0.35 5.55 7.45 -154.43 -1.15 4.40 16 12 N -0.44 -7.21 7.87 -12.22 -0.10 -7.30 16 13 C 0.08 1.04 11.17 -17.56 -0.20 0.84 16 14 C -0.16 -1.97 10.10 -39.44 -0.40 -2.37 16 15 C -0.14 -2.05 9.14 -39.17 -0.36 -2.40 16 16 C 0.06 1.02 6.72 -38.92 -0.26 0.75 16 17 O -0.32 -5.55 9.39 -19.69 -0.18 -5.73 16 18 C 0.07 1.38 4.70 37.16 0.17 1.56 16 19 C -0.01 -0.16 4.41 -27.88 -0.12 -0.29 16 20 C -0.53 -14.27 9.66 -34.44 -0.33 -14.60 16 21 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 22 C 0.07 2.03 5.47 -17.82 -0.10 1.94 16 23 N -0.90 -26.53 13.96 55.43 0.77 -25.75 16 24 Si 0.88 20.70 27.47 -169.99 -4.67 16.03 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 27 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.07 0.21 8.14 -51.93 -0.42 -0.22 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.13 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.12 0.09 8.14 -51.93 -0.42 -0.34 16 33 H 0.40 2.44 8.62 -40.82 -0.35 2.09 16 34 H 0.42 4.99 8.06 -40.82 -0.33 4.66 16 35 H 0.16 1.61 8.06 -52.49 -0.42 1.19 16 36 H 0.14 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.15 1.93 6.44 -52.49 -0.34 1.59 16 38 H 0.06 1.07 7.70 -51.93 -0.40 0.67 16 39 H 0.06 1.06 7.70 -51.93 -0.40 0.66 16 40 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 41 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 366.13 15.07 5.52 5.52 Total: -1.00 -36.61 366.13 -7.46 -44.07 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -5.52 Total: 2.48 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -3.77 Total: -0.19 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: 1.09 Total: -53.34 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -0.11 Total: -14.56 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.67 Total: 16.03 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.61 -7.46 -44.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188708647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.392 kcal (2) G-P(sol) polarization free energy of solvation -36.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds