Wall clock time and date at job start Tue Mar 31 2020 14:06:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08993 * 109.47139 * 2 1 4 4 C 1.53007 * 109.47139 * 119.99686 * 2 1 3 5 5 C 1.47198 * 109.46990 * 185.00168 * 4 2 1 6 6 N 3.43550 * 154.82302 * 111.56418 * 2 1 3 7 7 N 1.46496 * 109.47491 * 239.99625 * 2 1 3 8 8 C 1.34775 * 119.99986 * 85.00087 * 7 2 1 9 9 O 1.21589 * 120.00064 * 359.97438 * 8 7 2 10 10 N 1.34774 * 120.00006 * 180.02562 * 8 7 2 11 11 C 1.39594 * 119.99891 * 179.97438 * 10 8 7 12 12 N 1.32266 * 119.72727 * 0.26464 * 11 10 8 13 13 C 1.31963 * 121.69068 * 180.26509 * 12 11 10 14 14 C 1.38075 * 120.95403 * 359.72759 * 13 12 11 15 15 C 1.38794 * 119.35183 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44752 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31513 * 120.00305 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 119.99832 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.46901 * 89.99815 * 24 22 20 26 26 H 1.48488 * 109.47487 * 210.00255 * 24 22 20 27 27 H 1.48503 * 109.47026 * 330.00635 * 24 22 20 28 28 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47321 * 300.00263 * 1 2 3 30 30 H 1.09001 * 109.46892 * 60.00799 * 1 2 3 31 31 H 1.08998 * 109.46909 * 305.00179 * 4 2 1 32 32 H 1.08997 * 109.46832 * 64.99946 * 4 2 1 33 33 H 0.97000 * 120.00232 * 265.00129 * 7 2 1 34 34 H 0.97000 * 120.00212 * 359.97438 * 10 8 7 35 35 H 1.08000 * 119.52770 * 179.74706 * 13 12 11 36 36 H 1.07997 * 120.32417 * 179.97438 * 14 13 12 37 37 H 1.07993 * 120.77636 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 39 39 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 40 40 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 41 41 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 42 42 H 0.97002 * 120.00008 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5070 -0.6173 1.3113 6 7 4.6391 -0.5372 1.3592 7 7 2.0184 -0.6907 -1.1961 8 6 2.1472 -0.0184 -2.3570 9 8 1.8576 1.1612 -2.4119 10 7 2.5960 -0.6539 -3.4575 11 6 2.7289 0.0423 -4.6602 12 7 2.4177 1.3268 -4.7122 13 6 2.5237 2.0210 -5.8295 14 6 2.9720 1.4291 -6.9936 15 6 3.3158 0.0845 -6.9844 16 6 3.1955 -0.6206 -5.7951 17 8 3.5203 -1.9398 -5.7390 18 6 3.9831 -2.5459 -6.9476 19 6 4.2976 -4.0210 -6.6904 20 6 4.7850 -4.6603 -7.9651 21 1 4.8623 -4.0733 -8.8683 22 6 5.1312 -5.9948 -7.9784 23 7 5.5561 -6.5529 -9.0909 24 14 4.9968 -7.0103 -6.4163 25 1 3.6442 -7.6177 -6.3356 26 1 6.0216 -8.0847 -6.4345 27 1 5.2176 -6.1355 -5.2367 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 1.6054 -0.2617 2.1370 32 1 1.7517 -1.7714 1.2057 33 1 2.2491 -1.6318 -1.1525 34 1 2.8268 -1.5950 -3.4139 35 1 2.2561 3.0673 -5.8334 36 1 3.0544 2.0068 -7.9023 37 1 3.6695 -0.4016 -7.8816 38 1 4.8847 -2.0364 -7.2875 39 1 3.2107 -2.4668 -7.7126 40 1 5.0700 -4.0998 -5.9255 41 1 3.3961 -4.5308 -6.3503 42 1 5.8001 -7.4917 -9.1002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188708647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:57 Heat of formation + Delta-G solvation = -22.668775 kcal Electronic energy + Delta-G solvation = -25589.129111 eV Core-core repulsion = 21762.260145 eV Total energy + Delta-G solvation = -3826.868966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.09428 -40.82218 -39.20387 -38.24291 -36.62213 -35.83103 -35.39366 -33.10624 -32.94719 -32.08529 -30.17654 -28.98689 -27.31495 -25.16570 -24.06864 -23.08207 -22.27341 -21.68045 -20.01297 -19.54515 -19.11564 -18.41087 -18.19124 -17.28496 -17.22962 -16.95309 -16.39065 -16.29185 -15.76335 -15.47159 -15.22204 -15.10841 -14.92987 -14.73888 -14.61539 -14.38028 -14.11718 -13.79815 -13.34374 -13.33271 -13.20184 -12.85029 -12.71037 -12.61066 -12.52771 -12.20044 -11.92802 -11.85273 -11.77283 -11.64772 -11.54662 -11.45606 -10.81070 -10.44017 -10.24293 -10.11633 -8.83093 -8.34162 -6.41093 0.14646 0.29137 1.36760 1.38986 1.42103 1.50302 1.79394 1.86360 2.09740 2.12149 2.33602 2.91413 2.94241 3.01481 3.09667 3.56822 3.83126 3.85010 3.98551 4.12747 4.23599 4.26713 4.29753 4.40180 4.46103 4.66659 4.72802 4.84896 4.93138 4.94531 5.05326 5.10715 5.15530 5.28260 5.31831 5.47116 5.48748 5.55956 5.58054 5.82645 6.16148 6.29188 6.64394 6.65655 6.73038 7.16654 7.24275 7.55780 8.81541 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.010291 B = 0.003334 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.246787 B = 8396.329392 C =10498.333566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.162 3.838 3 H 0.072 0.928 4 C -0.024 4.024 5 C 0.228 3.772 6 N -0.508 5.508 7 N -0.732 5.732 8 C 0.694 3.306 9 O -0.572 6.572 10 N -0.662 5.662 11 C 0.333 3.667 12 N -0.471 5.471 13 C 0.076 3.924 14 C -0.150 4.150 15 C -0.148 4.148 16 C 0.039 3.961 17 O -0.324 6.324 18 C 0.086 3.914 19 C -0.005 4.005 20 C -0.536 4.536 21 H 0.042 0.958 22 C 0.012 3.988 23 N -0.945 5.945 24 Si 0.949 3.051 25 H -0.263 1.263 26 H -0.285 1.285 27 H -0.247 1.247 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.034 0.966 31 H 0.170 0.830 32 H 0.153 0.847 33 H 0.410 0.590 34 H 0.425 0.575 35 H 0.185 0.815 36 H 0.173 0.827 37 H 0.153 0.847 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.028 0.972 41 H 0.031 0.969 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.352 13.153 19.232 26.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.057 3.943 3 H 0.091 0.909 4 C -0.063 4.063 5 C -0.089 4.089 6 N -0.186 5.186 7 N -0.390 5.390 8 C 0.393 3.607 9 O -0.446 6.446 10 N -0.312 5.312 11 C 0.099 3.901 12 N -0.187 5.187 13 C -0.080 4.080 14 C -0.171 4.171 15 C -0.175 4.175 16 C -0.012 4.012 17 O -0.238 6.238 18 C 0.012 3.988 19 C -0.042 4.042 20 C -0.574 4.574 21 H 0.060 0.940 22 C -0.186 4.186 23 N -0.584 5.584 24 Si 0.772 3.228 25 H -0.188 1.188 26 H -0.210 1.210 27 H -0.170 1.170 28 H 0.100 0.900 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.247 0.753 34 H 0.263 0.737 35 H 0.202 0.798 36 H 0.190 0.810 37 H 0.171 0.829 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.047 0.953 41 H 0.049 0.951 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.175 14.435 20.219 27.666 hybrid contribution 0.638 -1.936 -1.167 2.349 sum -11.536 12.499 19.052 25.540 Atomic orbital electron populations 1.22132 0.92284 1.03909 1.03065 1.20923 0.95674 0.96512 0.81226 0.90948 1.20071 0.78825 1.07059 1.00367 1.29991 0.96106 0.91438 0.91371 1.81311 1.15737 1.10884 1.10648 1.45300 1.71222 1.14408 1.08095 1.16145 0.78632 0.85106 0.80800 1.90994 1.54882 1.14776 1.83978 1.42526 1.67557 1.14348 1.06784 1.17663 0.99056 0.89042 0.84321 1.67685 1.17016 1.04163 1.29804 1.23035 0.97161 1.00998 0.86837 1.22255 0.99644 0.94095 1.01068 1.21874 1.02296 0.96241 0.97057 1.19621 1.01676 0.85329 0.94549 1.85965 1.80351 1.19582 1.37888 1.22749 0.98172 0.93948 0.83956 1.19428 0.97353 0.90905 0.96522 1.21128 1.44722 0.95721 0.95834 0.93966 1.25896 0.93827 0.99092 0.99792 1.70031 1.45769 1.13438 1.29186 0.85681 0.78649 0.78409 0.80107 1.18772 1.21038 1.17014 0.89992 0.88329 0.94649 0.81276 0.82895 0.75321 0.73684 0.79794 0.80999 0.82934 0.92236 0.91890 0.95331 0.95071 0.92188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 9.48 71.98 0.68 -0.47 16 2 C 0.16 1.65 2.55 44.99 0.11 1.77 16 3 H 0.07 1.16 7.57 -2.39 -0.02 1.14 16 4 C -0.02 -0.06 5.25 28.79 0.15 0.10 16 5 C 0.23 3.35 15.14 89.44 1.35 4.71 16 6 N -0.51 -12.55 18.54 20.00 0.37 -12.18 16 7 N -0.73 -11.50 4.78 -457.82 -2.19 -13.69 16 8 C 0.69 18.43 8.50 179.06 1.52 19.95 16 9 O -0.57 -19.54 14.26 -4.00 -0.06 -19.60 16 10 N -0.66 -18.25 5.40 -321.76 -1.74 -19.99 16 11 C 0.33 10.63 7.45 132.98 0.99 11.62 16 12 N -0.47 -15.26 7.87 -192.58 -1.52 -16.78 16 13 C 0.08 1.91 11.17 84.63 0.95 2.85 16 14 C -0.15 -3.32 10.10 22.36 0.23 -3.09 16 15 C -0.15 -4.02 9.14 22.53 0.21 -3.81 16 16 C 0.04 1.24 6.72 22.70 0.15 1.39 16 17 O -0.32 -11.04 9.39 -93.36 -0.88 -11.92 16 18 C 0.09 3.20 4.70 71.98 0.34 3.54 16 19 C 0.00 -0.20 4.41 29.85 0.13 -0.07 16 20 C -0.54 -29.28 9.66 25.60 0.25 -29.03 16 21 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 22 C 0.01 0.67 5.47 84.65 0.46 1.13 16 23 N -0.94 -57.07 13.96 21.45 0.30 -56.77 16 24 Si 0.95 42.16 27.47 68.60 1.88 44.04 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.25 -10.19 6.54 99.48 0.65 -9.53 16 28 H 0.08 0.32 8.14 -2.39 -0.02 0.30 16 29 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.17 -0.85 8.14 -2.39 -0.02 -0.87 16 32 H 0.15 -0.61 8.14 -2.39 -0.02 -0.63 16 33 H 0.41 4.23 8.62 -92.71 -0.80 3.43 16 34 H 0.42 10.00 8.06 -92.71 -0.75 9.26 16 35 H 0.19 3.38 8.06 -2.91 -0.02 3.35 16 36 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 37 H 0.15 3.87 6.44 -2.91 -0.02 3.85 16 38 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 39 H 0.06 2.26 7.70 -2.39 -0.02 2.24 16 40 H 0.03 1.26 7.20 -2.39 -0.02 1.24 16 41 H 0.03 1.33 7.57 -2.39 -0.02 1.32 16 42 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -84.45 366.13 3.18 -81.27 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -0.53 Total: 15.03 kcal Atomic # 6 Polarization: 3.06 SS G_CDS: 7.52 Total: 10.58 kcal Atomic # 7 Polarization: -114.63 SS G_CDS: -4.77 Total: -119.40 kcal Atomic # 8 Polarization: -30.59 SS G_CDS: -0.93 Total: -31.52 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 1.88 Total: 44.04 kcal Total: -84.45 3.18 -81.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188708647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.603 kcal (2) G-P(sol) polarization free energy of solvation -84.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds