Wall clock time and date at job start Tue Mar 31 2020 14:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46863 * 2 1 4 4 C 1.47199 * 109.46816 * 119.99123 * 2 1 3 5 5 N 2.60805 * 109.47020 * 119.99416 * 2 1 3 6 6 C 1.52998 * 109.47542 * 239.99660 * 2 1 3 7 7 N 1.46496 * 109.46991 * 64.99963 * 6 2 1 8 8 C 1.34776 * 119.99988 * 180.02562 * 7 6 2 9 9 O 1.21589 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.39594 * 119.99902 * 179.97438 * 10 8 7 12 12 N 1.32268 * 119.72347 * 0.29564 * 11 10 8 13 13 C 1.31970 * 121.68397 * 180.28583 * 12 11 10 14 14 C 1.38074 * 120.95656 * 359.70589 * 13 12 11 15 15 C 1.38794 * 119.35179 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44773 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47325 * 59.99531 * 24 22 20 26 26 H 1.48496 * 109.47425 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47183 * 299.99726 * 24 22 20 28 28 H 1.09004 * 109.47017 * 60.00450 * 1 2 3 29 29 H 1.08994 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47555 * 300.00517 * 1 2 3 31 31 H 1.08999 * 109.46870 * 305.00020 * 6 2 1 32 32 H 1.08995 * 109.46965 * 185.00257 * 6 2 1 33 33 H 0.97000 * 120.00201 * 0.02562 * 7 6 2 34 34 H 0.97000 * 120.00172 * 0.02562 * 10 8 7 35 35 H 1.08000 * 119.52522 * 179.72561 * 13 12 11 36 36 H 1.07998 * 120.32407 * 180.02562 * 14 13 12 37 37 H 1.07993 * 120.77632 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 39 39 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 40 40 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 41 41 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 42 42 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0206 -0.6937 1.2020 5 7 2.3993 -1.2292 2.1296 6 6 2.0401 -0.7213 -1.2491 7 7 1.6526 0.0352 -2.4423 8 6 1.9958 -0.4138 -3.6658 9 8 2.6266 -1.4470 -3.7794 10 7 1.6388 0.2819 -4.7636 11 6 1.9948 -0.1829 -6.0308 12 7 2.6773 -1.3097 -6.1482 13 6 3.0386 -1.7817 -7.3264 14 6 2.7100 -1.1148 -8.4899 15 6 1.9886 0.0686 -8.4152 16 6 1.6211 0.5409 -7.1630 17 8 0.9143 1.6962 -7.0413 18 6 0.5782 2.3813 -8.2495 19 6 -0.2110 3.6486 -7.9144 20 6 -0.5649 4.3715 -9.1885 21 1 -0.2574 3.9676 -10.1418 22 6 -1.2805 5.5489 -9.1372 23 7 -1.6545 6.0410 -7.9762 24 14 -1.7198 6.4446 -10.7164 25 1 -2.5476 5.5589 -11.5739 26 1 -2.4856 7.6746 -10.3913 27 1 -0.4759 6.8121 -11.4396 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6055 -1.7198 -1.2950 32 1 3.1264 -0.7995 -1.2054 33 1 1.1490 0.8593 -2.3517 34 1 1.1352 1.1060 -4.6730 35 1 3.5993 -2.7032 -7.3815 36 1 3.0106 -1.5105 -9.4488 37 1 1.7189 0.6088 -9.3105 38 1 -0.0294 1.7311 -8.8790 39 1 1.4912 2.6512 -8.7802 40 1 -1.1239 3.3784 -7.3839 41 1 0.3962 4.2989 -7.2848 42 1 -2.1582 6.8691 -7.9401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188716483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:38 Heat of formation + Delta-G solvation = -0.093430 kcal Electronic energy + Delta-G solvation = -25155.223344 eV Core-core repulsion = 21329.333318 eV Total energy + Delta-G solvation = -3825.890026 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.95639 -39.71355 -38.02043 -37.68653 -35.73366 -34.73180 -33.49635 -32.80711 -31.55523 -30.54205 -29.08650 -27.03690 -25.43741 -24.17919 -23.11549 -22.64688 -21.25158 -20.67114 -19.09118 -18.26550 -17.55085 -17.47823 -16.19943 -16.19271 -15.99075 -15.74134 -15.57440 -15.01009 -14.69986 -14.53965 -14.50746 -13.94612 -13.87642 -13.72005 -13.43855 -13.22246 -12.89055 -12.83328 -12.41921 -12.22520 -12.02522 -11.94912 -11.76425 -11.52321 -11.09977 -10.99577 -10.73834 -10.71035 -10.46271 -10.06414 -9.80625 -9.45354 -9.36853 -9.16171 -9.09826 -8.54242 -7.65340 -6.20433 -4.25289 1.25896 1.45555 2.10401 2.35776 2.50690 3.15580 3.22163 3.27077 3.27930 3.41257 3.51813 3.95464 4.04393 4.16983 4.31892 4.36769 4.59554 4.65830 4.95762 5.06323 5.16552 5.17363 5.18135 5.25686 5.31460 5.47105 5.49282 5.65039 5.84350 5.88415 6.04390 6.14316 6.17670 6.34855 6.51934 6.53348 6.77129 7.11953 7.32623 7.49937 7.59004 7.67177 7.84696 8.11971 8.21956 8.55892 8.79704 9.39749 10.90954 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.002672 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.879103 B =10474.944023 C =12758.892698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.006 4.006 3 H 0.124 0.876 4 C 0.214 3.786 5 N -0.425 5.425 6 C 0.149 3.851 7 N -0.745 5.745 8 C 0.699 3.301 9 O -0.533 6.533 10 N -0.660 5.660 11 C 0.346 3.654 12 N -0.442 5.442 13 C 0.076 3.924 14 C -0.162 4.162 15 C -0.147 4.147 16 C 0.066 3.934 17 O -0.316 6.316 18 C 0.066 3.934 19 C 0.027 3.973 20 C -0.529 4.529 21 H 0.058 0.942 22 C 0.062 3.938 23 N -0.889 5.889 24 Si 0.899 3.101 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.080 0.920 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.400 0.600 34 H 0.421 0.579 35 H 0.156 0.844 36 H 0.134 0.866 37 H 0.145 0.855 38 H 0.052 0.948 39 H 0.052 0.948 40 H 0.028 0.972 41 H 0.028 0.972 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.220 -10.987 8.879 15.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 H 0.141 0.859 4 C -0.105 4.105 5 N -0.101 5.101 6 C 0.023 3.977 7 N -0.404 5.404 8 C 0.398 3.602 9 O -0.404 6.404 10 N -0.310 5.310 11 C 0.112 3.888 12 N -0.156 5.156 13 C -0.080 4.080 14 C -0.183 4.183 15 C -0.173 4.173 16 C 0.014 3.986 17 O -0.229 6.229 18 C -0.008 4.008 19 C -0.010 4.010 20 C -0.567 4.567 21 H 0.076 0.924 22 C -0.141 4.141 23 N -0.527 5.527 24 Si 0.726 3.274 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.201 1.201 28 H 0.099 0.901 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.235 0.765 34 H 0.258 0.742 35 H 0.173 0.827 36 H 0.152 0.848 37 H 0.162 0.838 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.046 0.954 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.426 -12.953 11.282 18.340 hybrid contribution -1.126 2.092 -2.160 3.211 sum 5.300 -10.861 9.122 15.141 Atomic orbital electron populations 1.21886 0.91136 1.03928 1.03827 1.19027 0.97861 0.99694 0.86195 0.85863 1.28742 0.93490 0.93829 0.94430 1.81267 1.08518 1.08879 1.11414 1.21048 1.00826 0.95019 0.80800 1.44962 1.62162 1.29081 1.04196 1.15849 0.80584 0.83762 0.80001 1.91051 1.41851 1.22809 1.84671 1.42439 1.57999 1.27908 1.02610 1.17462 0.97261 0.91441 0.82624 1.67623 1.10999 1.09587 1.27423 1.22411 0.99188 0.99928 0.86488 1.21891 1.00421 0.95926 1.00110 1.21592 1.00947 0.98093 0.96704 1.19532 0.96681 0.89425 0.92978 1.86091 1.67686 1.32192 1.36939 1.23390 0.98943 0.94927 0.83530 1.19114 0.95048 0.88749 0.98062 1.20913 1.36076 1.07524 0.92188 0.92387 1.24973 0.95492 0.97117 0.96492 1.69948 1.37757 1.20924 1.24096 0.86545 0.78666 0.79052 0.83117 1.20065 1.21091 1.20062 0.90085 0.91267 0.91185 0.90316 0.90472 0.76534 0.74165 0.82659 0.84828 0.83753 0.92951 0.92950 0.95368 0.95376 0.92584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.54 9.02 37.16 0.34 -0.20 16 2 C -0.01 -0.03 2.80 -93.41 -0.26 -0.29 16 3 H 0.12 0.28 8.14 -51.92 -0.42 -0.15 16 4 C 0.21 1.65 14.65 -20.76 -0.30 1.35 16 5 N -0.43 -4.69 18.54 42.16 0.78 -3.91 16 6 C 0.15 1.02 5.02 -4.05 -0.02 1.00 16 7 N -0.75 -5.90 5.29 -65.23 -0.34 -6.24 16 8 C 0.70 9.06 8.53 -86.92 -0.74 8.31 16 9 O -0.53 -9.02 14.59 5.29 0.08 -8.95 16 10 N -0.66 -8.76 5.40 -15.67 -0.08 -8.84 16 11 C 0.35 5.44 7.45 -154.43 -1.15 4.29 16 12 N -0.44 -7.15 7.87 -12.22 -0.10 -7.24 16 13 C 0.08 1.01 11.17 -17.55 -0.20 0.81 16 14 C -0.16 -1.94 10.10 -39.44 -0.40 -2.34 16 15 C -0.15 -2.04 9.14 -39.17 -0.36 -2.40 16 16 C 0.07 1.04 6.72 -38.92 -0.26 0.77 16 17 O -0.32 -5.49 9.39 -19.69 -0.18 -5.67 16 18 C 0.07 1.25 4.70 37.16 0.17 1.42 16 19 C 0.03 0.65 5.34 -27.88 -0.15 0.50 16 20 C -0.53 -13.77 9.11 -34.44 -0.31 -14.08 16 21 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 22 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -24.96 13.29 55.43 0.74 -24.22 16 24 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 25 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 26 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.08 0.23 7.18 -51.93 -0.37 -0.15 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.40 1.98 7.67 -40.82 -0.31 1.66 16 34 H 0.42 4.74 8.06 -40.82 -0.33 4.41 16 35 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.14 1.86 6.44 -52.49 -0.34 1.52 16 38 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 39 H 0.05 0.94 7.70 -51.93 -0.40 0.54 16 40 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 368.33 15.07 5.55 5.55 Total: -1.00 -34.47 368.33 -7.83 -42.30 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -5.50 Total: 1.28 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -3.74 Total: 0.71 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.99 Total: -50.45 kcal Atomic # 8 Polarization: -14.51 SS G_CDS: -0.11 Total: -14.62 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -34.47 -7.83 -42.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188716483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.204 kcal (2) G-P(sol) polarization free energy of solvation -34.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds