Wall clock time and date at job start Tue Mar 31 2020 14:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46863 * 2 1 4 4 C 1.47199 * 109.46816 * 119.99123 * 2 1 3 5 5 N 2.60805 * 109.47020 * 119.99416 * 2 1 3 6 6 C 1.52998 * 109.47542 * 239.99660 * 2 1 3 7 7 N 1.46496 * 109.46991 * 64.99963 * 6 2 1 8 8 C 1.34776 * 119.99988 * 180.02562 * 7 6 2 9 9 O 1.21589 * 120.00100 * 0.02562 * 8 7 6 10 10 N 1.34775 * 120.00018 * 179.97438 * 8 7 6 11 11 C 1.39594 * 119.99902 * 179.97438 * 10 8 7 12 12 N 1.32268 * 119.72347 * 0.29564 * 11 10 8 13 13 C 1.31970 * 121.68397 * 180.28583 * 12 11 10 14 14 C 1.38074 * 120.95656 * 359.70589 * 13 12 11 15 15 C 1.38794 * 119.35179 * 359.97438 * 14 13 12 16 16 C 1.38781 * 118.44773 * 359.97438 * 15 14 13 17 17 O 1.35983 * 120.49767 * 179.97438 * 16 15 14 18 18 C 1.42906 * 116.99537 * 0.02562 * 17 16 15 19 19 C 1.53006 * 109.46748 * 179.97438 * 18 17 16 20 20 C 1.50699 * 109.46866 * 179.97438 * 19 18 17 21 21 H 1.08003 * 119.99962 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00270 * 180.02562 * 20 19 18 23 23 N 1.31522 * 119.99834 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00496 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47325 * 59.99531 * 24 22 20 26 26 H 1.48496 * 109.47425 * 179.97438 * 24 22 20 27 27 H 1.48505 * 109.47183 * 299.99726 * 24 22 20 28 28 H 1.09004 * 109.47017 * 60.00450 * 1 2 3 29 29 H 1.08994 * 109.46935 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47555 * 300.00517 * 1 2 3 31 31 H 1.08999 * 109.46870 * 305.00020 * 6 2 1 32 32 H 1.08995 * 109.46965 * 185.00257 * 6 2 1 33 33 H 0.97000 * 120.00201 * 0.02562 * 7 6 2 34 34 H 0.97000 * 120.00172 * 0.02562 * 10 8 7 35 35 H 1.08000 * 119.52522 * 179.72561 * 13 12 11 36 36 H 1.07998 * 120.32407 * 180.02562 * 14 13 12 37 37 H 1.07993 * 120.77632 * 180.02562 * 15 14 13 38 38 H 1.09000 * 109.47490 * 59.99651 * 18 17 16 39 39 H 1.09001 * 109.47232 * 299.99005 * 18 17 16 40 40 H 1.08993 * 109.46955 * 299.99993 * 19 18 17 41 41 H 1.09000 * 109.47050 * 59.99822 * 19 18 17 42 42 H 0.96992 * 120.00032 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0206 -0.6937 1.2020 5 7 2.3993 -1.2292 2.1296 6 6 2.0401 -0.7213 -1.2491 7 7 1.6526 0.0352 -2.4423 8 6 1.9958 -0.4138 -3.6658 9 8 2.6266 -1.4470 -3.7794 10 7 1.6388 0.2819 -4.7636 11 6 1.9948 -0.1829 -6.0308 12 7 2.6773 -1.3097 -6.1482 13 6 3.0386 -1.7817 -7.3264 14 6 2.7100 -1.1148 -8.4899 15 6 1.9886 0.0686 -8.4152 16 6 1.6211 0.5409 -7.1630 17 8 0.9143 1.6962 -7.0413 18 6 0.5782 2.3813 -8.2495 19 6 -0.2110 3.6486 -7.9144 20 6 -0.5649 4.3715 -9.1885 21 1 -0.2574 3.9676 -10.1418 22 6 -1.2805 5.5489 -9.1372 23 7 -1.6545 6.0410 -7.9762 24 14 -1.7198 6.4446 -10.7164 25 1 -2.5476 5.5589 -11.5739 26 1 -2.4856 7.6746 -10.3913 27 1 -0.4759 6.8121 -11.4396 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.6055 -1.7198 -1.2950 32 1 3.1264 -0.7995 -1.2054 33 1 1.1490 0.8593 -2.3517 34 1 1.1352 1.1060 -4.6730 35 1 3.5993 -2.7032 -7.3815 36 1 3.0106 -1.5105 -9.4488 37 1 1.7189 0.6088 -9.3105 38 1 -0.0294 1.7311 -8.8790 39 1 1.4912 2.6512 -8.7802 40 1 -1.1239 3.3784 -7.3839 41 1 0.3962 4.2989 -7.2848 42 1 -2.1582 6.8691 -7.9401 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188716483.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:37 Heat of formation + Delta-G solvation = -23.012120 kcal Electronic energy + Delta-G solvation = -25156.217173 eV Core-core repulsion = 21329.333318 eV Total energy + Delta-G solvation = -3826.883855 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.148 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.02718 -40.72521 -39.12157 -38.52818 -36.50522 -35.82520 -35.39464 -33.52104 -32.78756 -32.08134 -30.25702 -27.59363 -27.11272 -25.17827 -24.23001 -23.58859 -22.64459 -21.79801 -20.03723 -19.41533 -18.79413 -18.14563 -17.97124 -17.20516 -17.14224 -16.72056 -16.50597 -16.45891 -15.85722 -15.52533 -15.43130 -15.10663 -14.90062 -14.48324 -14.31596 -14.17149 -14.07763 -13.95315 -13.58479 -13.44986 -13.24255 -12.77036 -12.69855 -12.66299 -12.41579 -12.27635 -11.96455 -11.79935 -11.64913 -11.62626 -11.53861 -11.37578 -10.56213 -10.38179 -10.19783 -10.08128 -8.76266 -8.22297 -6.34014 0.20569 0.35783 1.30119 1.45394 1.47306 1.55035 1.73382 1.77371 2.14913 2.16665 2.47819 2.75626 2.97268 3.13114 3.21015 3.62537 3.68614 3.92236 3.92478 4.05103 4.19663 4.24120 4.35446 4.39741 4.52736 4.69897 4.72414 4.80626 4.92693 5.01060 5.05651 5.19802 5.32572 5.33667 5.36505 5.42056 5.56531 5.56684 5.75948 5.88507 6.12752 6.40001 6.50134 6.77543 6.80746 7.22038 7.35699 7.58558 8.89915 Molecular weight = 318.15amu Principal moments of inertia in cm(-1) A = 0.011660 B = 0.002672 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2400.879103 B =10474.944023 C =12758.892698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.009 3.991 3 H 0.156 0.844 4 C 0.241 3.759 5 N -0.485 5.485 6 C 0.150 3.850 7 N -0.723 5.723 8 C 0.696 3.304 9 O -0.576 6.576 10 N -0.658 5.658 11 C 0.331 3.669 12 N -0.472 5.472 13 C 0.074 3.926 14 C -0.149 4.149 15 C -0.148 4.148 16 C 0.041 3.959 17 O -0.326 6.326 18 C 0.083 3.917 19 C 0.031 3.969 20 C -0.545 4.545 21 H 0.070 0.930 22 C 0.005 3.995 23 N -0.928 5.928 24 Si 0.967 3.033 25 H -0.266 1.266 26 H -0.286 1.286 27 H -0.266 1.266 28 H 0.093 0.907 29 H 0.060 0.940 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.417 0.583 34 H 0.427 0.573 35 H 0.183 0.817 36 H 0.173 0.827 37 H 0.156 0.844 38 H 0.063 0.937 39 H 0.063 0.937 40 H 0.003 0.997 41 H 0.003 0.997 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.358 -10.983 7.159 14.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 H 0.174 0.826 4 C -0.077 4.077 5 N -0.162 5.162 6 C 0.024 3.976 7 N -0.382 5.382 8 C 0.395 3.605 9 O -0.450 6.450 10 N -0.308 5.308 11 C 0.098 3.902 12 N -0.188 5.188 13 C -0.083 4.083 14 C -0.170 4.170 15 C -0.175 4.175 16 C -0.010 4.010 17 O -0.239 6.239 18 C 0.009 3.991 19 C -0.006 4.006 20 C -0.582 4.582 21 H 0.088 0.912 22 C -0.194 4.194 23 N -0.567 5.567 24 Si 0.791 3.209 25 H -0.191 1.191 26 H -0.211 1.211 27 H -0.191 1.191 28 H 0.112 0.888 29 H 0.079 0.921 30 H 0.098 0.902 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.255 0.745 34 H 0.266 0.734 35 H 0.200 0.800 36 H 0.190 0.810 37 H 0.173 0.827 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.546 -12.928 9.591 17.378 hybrid contribution -1.120 1.995 -1.620 2.804 sum 5.426 -10.933 7.971 14.578 Atomic orbital electron populations 1.21922 0.90063 1.03833 1.04942 1.19118 0.98422 1.00387 0.83353 0.82637 1.29238 0.91846 0.92438 0.94152 1.81292 1.10577 1.10806 1.13500 1.21050 1.00380 0.94930 0.81227 1.44759 1.61153 1.29413 1.02874 1.16038 0.80253 0.83284 0.80909 1.91013 1.43897 1.24694 1.85425 1.42448 1.57948 1.28118 1.02336 1.17660 0.97585 0.91618 0.83382 1.67684 1.11903 1.10058 1.29119 1.23014 0.98458 1.00666 0.86161 1.22247 0.98687 0.94635 1.01394 1.21879 1.00603 0.98746 0.96252 1.19662 0.98006 0.89248 0.94072 1.86017 1.68689 1.33258 1.35981 1.22941 0.98820 0.93262 0.84063 1.18931 0.94263 0.90654 0.96795 1.21382 1.35697 1.07818 0.93350 0.91232 1.25912 0.95491 0.98166 0.99788 1.70079 1.38734 1.21477 1.26396 0.85465 0.78666 0.77682 0.79047 1.19064 1.21104 1.19063 0.88820 0.92059 0.90207 0.91282 0.91351 0.74506 0.73404 0.79988 0.80971 0.82659 0.91914 0.91924 0.97817 0.97841 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.02 71.98 0.65 -0.14 16 2 C 0.01 0.06 2.80 -12.60 -0.04 0.03 16 3 H 0.16 0.21 8.14 -2.38 -0.02 0.19 16 4 C 0.24 3.56 14.65 89.44 1.31 4.87 16 5 N -0.49 -10.82 18.54 20.01 0.37 -10.45 16 6 C 0.15 1.94 5.02 86.38 0.43 2.37 16 7 N -0.72 -10.74 5.29 -478.56 -2.53 -13.27 16 8 C 0.70 17.97 8.53 179.06 1.53 19.49 16 9 O -0.58 -19.75 14.59 -4.00 -0.06 -19.81 16 10 N -0.66 -17.49 5.40 -321.75 -1.74 -19.22 16 11 C 0.33 10.33 7.45 132.98 0.99 11.32 16 12 N -0.47 -15.00 7.87 -192.57 -1.52 -16.52 16 13 C 0.07 1.79 11.17 84.63 0.95 2.73 16 14 C -0.15 -3.12 10.10 22.36 0.23 -2.89 16 15 C -0.15 -3.82 9.14 22.53 0.21 -3.62 16 16 C 0.04 1.27 6.72 22.70 0.15 1.42 16 17 O -0.33 -11.28 9.39 -93.36 -0.88 -12.16 16 18 C 0.08 3.10 4.70 71.98 0.34 3.44 16 19 C 0.03 1.49 5.34 29.85 0.16 1.65 16 20 C -0.54 -28.21 9.11 25.60 0.23 -27.98 16 21 H 0.07 3.36 7.74 -2.91 -0.02 3.33 16 22 C 0.01 0.28 5.46 84.65 0.46 0.75 16 23 N -0.93 -52.75 13.29 21.45 0.28 -52.47 16 24 Si 0.97 40.97 29.54 68.60 2.03 43.00 16 25 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 26 H -0.29 -11.99 7.11 99.48 0.71 -11.28 16 27 H -0.27 -10.78 7.11 99.48 0.71 -10.08 16 28 H 0.09 0.30 7.18 -2.38 -0.02 0.28 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.42 3.39 7.67 -92.71 -0.71 2.68 16 34 H 0.43 9.67 8.06 -92.71 -0.75 8.92 16 35 H 0.18 3.26 8.06 -2.91 -0.02 3.23 16 36 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 37 H 0.16 3.60 6.44 -2.91 -0.02 3.58 16 38 H 0.06 2.18 7.70 -2.39 -0.02 2.16 16 39 H 0.06 2.18 7.70 -2.39 -0.02 2.16 16 40 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 41 H 0.00 0.17 8.14 -2.39 -0.02 0.15 16 42 H 0.27 14.24 8.31 -92.71 -0.77 13.47 16 Total: -1.00 -76.70 368.33 3.18 -73.52 By element: Atomic # 1 Polarization: 14.31 SS G_CDS: -0.39 Total: 13.92 kcal Atomic # 6 Polarization: 5.85 SS G_CDS: 7.60 Total: 13.45 kcal Atomic # 7 Polarization: -106.80 SS G_CDS: -5.13 Total: -111.92 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.93 Total: -31.96 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -76.70 3.18 -73.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188716483.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.510 kcal (2) G-P(sol) polarization free energy of solvation -76.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds